GREMLIN Database
UPF0701 protein YicCLast updated: 1439683917

Organism: ECOLI    
Function: known
Type: SOL
Uniprot: P23839
Ecogene: EG11192
Pfam: PF08340 DUF1732; PF03755 YicC_N
Co-evolution data: 1423465536


(domains split for clarity)

Notes:
  • There are three domains, which converge on their own.
  • Even though they converge, they do not make all the contacts. It is physically impossible to make all the top co-evolving contacts. It turns out, you can easily make all the contacts in context of helical symmetry!
  • belongs to a 93 gene network implicated in dna repair although the function of this gene is still unknown: PMC3782309
Contact map (between two units in helical symmetry)

Grey = intra contacts
Purple = inter contacts

Notes:
  • We think it might form a filament, but without additional information we cannot determine the number of units per turn.
 

Models
Name DB Rc Date Action
Dimer P23839_ECOLI 0.958 16Dec2014 View - Download
AB - Model P23839_ECOLI 0.853 30Mar2015 View - Download
AB - Model P23839_ECOLI 0.836 30Mar2015 View - Download
AB - Model P23839_ECOLI 0.830 30Mar2015 View - Download
AB - Model P23839_ECOLI 0.822 30Mar2015 View - Download
AB - Model P23839_ECOLI 0.809 30Mar2015 View - Download
Files
File
YICC_01.png
YICC_02.png
YICC_models.png
YICC_30Mar2015.zip
YICC_helix_16Dec2014.pdb
YICC_contacts-fs8.png
YICC_stack.png
YICC_filament.png
YICC_ill.png

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