GREMLIN Database
PF09954 - (89-148) Uncharacterized protein YdaT
UniProt: P96595 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 60 (54)
Sequences: 2358 (1796)
Seq/√Len: 244.4
META: 0.78

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
27_K55_Q2.7001.00
24_K33_R2.5041.00
34_A45_V2.4261.00
2_H48_H2.3411.00
11_A23_I2.1111.00
49_L53_S1.9551.00
49_L55_Q1.9371.00
14_A17_A1.8821.00
22_E33_R1.7631.00
6_H11_A1.6241.00
4_I11_A1.5841.00
26_T29_E1.4961.00
31_I47_V1.4831.00
20_V23_I1.4091.00
6_H20_V1.3981.00
37_I40_H1.3771.00
11_A20_V1.3451.00
13_K20_V1.3091.00
28_K32_E1.2451.00
14_A21_S1.2301.00
6_H23_I1.2031.00
38_A45_V1.2011.00
17_A21_S1.1971.00
33_R36_E1.1751.00
14_A41_K1.1381.00
38_A43_T1.1371.00
27_K31_I1.0761.00
27_K49_L1.0751.00
12_V34_A1.0591.00
3_V34_A1.0541.00
21_S37_I1.0451.00
33_R37_I1.0321.00
35_K39_A1.0261.00
35_K45_V1.0091.00
12_V30_A0.9761.00
12_V37_I0.8861.00
24_K30_A0.8700.99
9_G23_I0.8680.99
6_H9_G0.8610.99
31_I45_V0.8610.99
9_G25_D0.8590.99
36_E39_A0.7980.99
28_K31_I0.7640.99
2_H46_I0.7570.98
48_H54_V0.7520.98
3_V12_V0.7440.98
3_V45_V0.7110.98
2_H5_K0.7040.98
27_K50_A0.7010.98
8_K11_A0.6840.97
14_A37_I0.6820.97
15_E46_I0.6820.97
15_E43_T0.6450.96
12_V43_T0.6430.96
25_D28_K0.6270.95
7_K23_I0.6260.95
5_K50_A0.6170.95
19_R40_H0.6060.94
44_E54_V0.6060.94
35_K44_E0.5960.94
32_E35_K0.5910.94
4_I13_K0.5810.93
17_A20_V0.5720.92
13_K48_H0.5710.92
36_E40_H0.5670.92
39_A42_G0.5570.91
31_I35_K0.5490.91
46_I54_V0.5480.91
39_A45_V0.5440.90
24_K29_E0.5380.90
18_K32_E0.5360.90
39_A43_T0.5310.89
19_R42_G0.5310.89
4_I43_T0.5300.89
38_A41_K0.5260.89
3_V38_A0.5150.88
5_K53_S0.5130.88
37_I41_K0.5110.88
12_V22_E0.5060.87
25_D36_E0.5060.87
15_E38_A0.5000.86
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4lmgA 1 0.7 10.2 0.879 Contact Map
3hgtA 2 0.7 6 0.891 Contact Map
2jyaA 1 0.8167 5.6 0.893 Contact Map
4l2iB 1 0.9667 5.3 0.894 Contact Map
1z1bA 3 0.9833 5.3 0.894 Contact Map
2ljuA 1 0.9167 5.1 0.895 Contact Map
1z3iX 4 0.8 5 0.895 Contact Map
3mwyW 2 0.8 4.7 0.897 Contact Map
1jvnA 1 0.9167 4.4 0.898 Contact Map
1o97C 1 0.9667 4.2 0.899 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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