GREMLIN Database
PF01313 - Flagellar biosynthetic protein FliQ
UniProt: P0AC07 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 89 (86)
Sequences: 10482 (6463)
Seq/√Len: 696.9
META: 0.764

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
27_V61_A3.3791.00
27_V57_A3.0081.00
31_T57_A2.8841.00
74_L78_R2.3861.00
61_A65_A2.3311.00
12_E79_T2.3291.00
78_R82_T2.3161.00
8_M12_E2.0731.00
16_V72_L2.0471.00
37_I41_A2.0181.00
20_L69_M2.0171.00
77_V81_F1.9551.00
79_T82_T1.8941.00
83_N86_Y1.8101.00
71_N75_D1.7131.00
12_E15_K1.7011.00
28_A58_V1.6481.00
5_S8_M1.6251.00
17_A59_F1.6251.00
15_K19_A1.5881.00
22_A26_L1.5571.00
50_S53_P1.5151.00
75_D78_R1.5051.00
19_A72_L1.4621.00
79_T83_N1.4481.00
70_L74_L1.4251.00
20_L73_L1.3791.00
11_T15_K1.3611.00
26_L30_V1.3361.00
2_T5_S1.2871.00
73_L77_V1.2871.00
82_T85_P1.2431.00
8_M11_T1.2381.00
25_L52_I1.2101.00
34_I38_L1.1951.00
23_P27_V1.1291.00
16_V19_A1.1241.00
4_E8_M1.1211.00
16_V20_L1.0641.00
24_L65_A1.0071.00
27_V31_T0.9961.00
49_L53_P0.9951.00
40_A47_M0.9901.00
75_D79_T0.9341.00
3_P7_M0.9231.00
77_V80_L0.9201.00
33_L37_I0.9021.00
47_M50_S0.9001.00
27_V65_A0.8901.00
60_I64_I0.8871.00
29_L52_I0.8831.00
3_P71_N0.8831.00
18_L56_I0.8821.00
81_F84_L0.8731.00
24_L58_V0.8621.00
7_M10_G0.8611.00
24_L62_I0.8571.00
40_A43_Q0.8561.00
41_A66_G0.8471.00
24_L61_A0.8391.00
3_P6_V0.8341.00
65_A69_M0.8151.00
68_W72_L0.8141.00
37_I44_I0.8021.00
51_F54_K0.7781.00
57_A61_A0.7661.00
62_I66_G0.7631.00
7_M70_L0.7491.00
56_I60_I0.7371.00
29_L53_P0.7331.00
81_F85_P0.7311.00
6_V9_M0.7251.00
18_L59_F0.7181.00
17_A21_A0.7161.00
46_E50_S0.6951.00
16_V76_Y0.6751.00
13_A17_A0.6741.00
20_L72_L0.6661.00
7_M11_T0.6651.00
40_A45_N0.6621.00
41_A45_N0.6521.00
13_A76_Y0.6511.00
32_G54_K0.6461.00
6_V10_G0.6381.00
46_E49_L0.6201.00
9_M80_L0.6171.00
10_G14_M0.6171.00
80_L85_P0.6141.00
36_S49_L0.6131.00
63_I66_G0.6121.00
29_L46_E0.6121.00
12_E16_V0.6111.00
50_S54_K0.6091.00
35_I50_S0.6091.00
36_S50_S0.6061.00
72_L75_D0.6051.00
28_A50_S0.6001.00
80_L83_N0.5981.00
16_V73_L0.5891.00
71_N78_R0.5841.00
30_V34_I0.5821.00
82_T86_Y0.5821.00
28_A66_G0.5801.00
43_Q69_M0.5711.00
29_L51_F0.5691.00
36_S44_I0.5691.00
42_T46_E0.5671.00
10_G13_A0.5631.00
72_L79_T0.5631.00
15_K18_L0.5601.00
16_V43_Q0.5581.00
13_A16_V0.5551.00
12_E19_A0.5521.00
10_G76_Y0.5511.00
71_N74_L0.5501.00
40_A44_I0.5411.00
12_E76_Y0.5411.00
5_S83_N0.5361.00
24_L69_M0.5351.00
14_M18_L0.5321.00
45_N49_L0.5311.00
38_L44_I0.5201.00
36_S40_A0.5130.99
25_L74_L0.5130.99
36_S58_V0.5120.99
24_L27_V0.5080.99
14_M59_F0.5050.99
6_V24_L0.5040.99
28_A31_T0.5000.99
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4pd6A 3 0.3933 8.4 0.899 Contact Map
3tuiA 2 0.9888 2 0.927 Contact Map
4u9nA 2 0.8989 1.9 0.927 Contact Map
4eneA 2 0.9663 1.8 0.928 Contact Map
3mktA 1 0.9551 1.6 0.929 Contact Map
1ji6A 1 0.6067 1.3 0.933 Contact Map
3mk7A 1 0.8315 1.3 0.933 Contact Map
4humA 1 0.9888 1.2 0.935 Contact Map
2c9kA 1 0.5843 1.2 0.935 Contact Map
2rkkA 2 0.6629 1.2 0.935 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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