GREMLIN Database
PF03748 - Flagellar protein FliL
UniProt: P0ABX8 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_10
Length: 125 (115)
Sequences: 3558 (2440)
Seq/√Len: 227.6
META: 0.889

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
80_Q97_E3.1501.00
60_S63_S2.9261.00
56_E60_S2.7011.00
30_A50_T2.6881.00
81_D84_V2.5621.00
73_L98_I2.4841.00
46_Y122_A2.3461.00
101_T104_T2.3311.00
80_Q84_V2.2611.00
29_Y53_L2.2501.00
65_Y68_E2.2461.00
71_S75_L2.1931.00
59_R63_S2.0731.00
56_E59_R2.0511.00
72_R101_T2.0331.00
52_R68_E1.9231.00
77_F98_I1.8871.00
98_I118_V1.8301.00
78_S91_K1.7671.00
35_T46_Y1.7371.00
51_L102_L1.7141.00
57_A60_S1.6131.00
73_L77_F1.5531.00
29_Y59_R1.5451.00
36_V45_L1.5341.00
58_T61_R1.5251.00
49_I77_F1.4861.00
93_N96_A1.4761.00
103_S113_Q1.4731.00
34_F70_R1.4471.00
54_K116_T1.4351.00
69_V102_L1.4161.00
29_Y62_L1.4151.00
49_I98_I1.3931.00
43_R82_A1.3871.00
29_Y66_L1.3841.00
85_L125_L1.3661.00
60_S64_E1.2981.00
93_N97_E1.2801.00
96_A100_T1.2571.00
92_K95_I1.2441.00
29_Y63_S1.2361.00
55_D58_T1.2311.00
63_S66_L1.1891.00
88_E92_K1.1661.00
40_D43_R1.1651.00
32_D70_R1.1451.00
82_A86_A1.1431.00
33_T48_G1.1251.00
53_L59_R1.1211.00
45_L77_F1.0631.00
99_K103_S1.0511.00
99_K115_V1.0171.00
28_F67_P1.0161.00
103_S106_L1.0151.00
28_F65_Y0.9891.00
70_R74_L0.9861.00
76_L98_I0.9721.00
75_L92_K0.9691.00
99_K118_V0.9551.00
74_L78_S0.9501.00
17_K21_R0.9501.00
91_K123_F0.9381.00
51_L62_L0.9341.00
48_G122_A0.9151.00
45_L123_F0.9080.99
76_L80_Q0.9050.99
38_L125_L0.8930.99
92_K96_A0.8730.99
25_S64_E0.8670.99
120_Y123_F0.8600.99
34_F74_L0.8560.99
89_E93_N0.8560.99
53_L62_L0.8550.99
35_T95_I0.8470.99
17_K20_Q0.8410.99
15_D18_A0.8410.99
53_L58_T0.8370.99
19_Q112_K0.8330.99
52_R116_T0.8330.99
58_T114_D0.8290.99
71_S95_I0.8280.99
96_A99_K0.8160.99
100_T104_T0.8110.99
72_R105_P0.8100.99
27_V30_A0.8050.99
36_V77_F0.8040.99
34_F73_L0.7910.99
62_L120_Y0.7820.98
57_A61_R0.7660.98
69_V106_L0.7640.98
95_I120_Y0.7610.98
34_F77_F0.7580.98
52_R117_D0.7520.98
47_I123_F0.7520.98
20_Q24_P0.7380.98
95_I125_L0.7350.98
28_F31_L0.7340.98
38_L82_A0.7330.98
18_A21_R0.7180.97
31_L70_R0.7070.97
27_V56_E0.7050.97
26_P65_Y0.6890.97
90_G123_F0.6850.96
87_T90_G0.6810.96
30_A48_G0.6810.96
61_R65_Y0.6800.96
50_T121_T0.6790.96
68_E109_G0.6770.96
48_G70_R0.6730.96
38_L42_D0.6700.96
102_L115_V0.6630.96
72_R104_T0.6620.96
49_I120_Y0.6560.95
71_S74_L0.6510.95
46_Y71_S0.6490.95
95_I99_K0.6450.95
58_T106_L0.6440.95
14_A19_Q0.6420.95
105_P113_Q0.6380.95
76_L97_E0.6360.95
27_V59_R0.6350.95
44_V117_D0.6320.94
51_L72_R0.6240.94
74_L88_E0.6190.94
43_R83_A0.6180.94
18_A22_V0.6170.94
31_L69_V0.6140.94
88_E101_T0.6140.94
110_Q114_D0.6130.94
76_L91_K0.6050.93
46_Y101_T0.6020.93
37_N44_V0.5990.93
86_A91_K0.5940.92
16_D19_Q0.5830.92
12_V18_A0.5810.92
46_Y124_I0.5810.92
34_F80_Q0.5800.92
24_P56_E0.5790.91
61_R114_D0.5790.91
95_I117_D0.5720.91
35_T50_T0.5710.91
24_P54_K0.5700.91
71_S91_K0.5670.91
71_S119_L0.5650.90
14_A18_A0.5640.90
80_Q85_L0.5640.90
40_D83_A0.5630.90
79_R88_E0.5590.90
61_R113_Q0.5520.89
25_S56_E0.5490.89
54_K114_D0.5490.89
26_P52_R0.5480.89
13_A18_A0.5450.89
61_R64_E0.5420.89
19_Q22_V0.5400.88
38_L71_S0.5350.88
105_P109_G0.5320.88
87_T93_N0.5300.88
44_V71_S0.5290.87
49_I118_V0.5270.87
68_E108_A0.5260.87
15_D24_P0.5190.86
19_Q57_A0.5180.86
52_R119_L0.5160.86
68_E72_R0.5130.86
45_L85_L0.5100.85
68_E119_L0.5080.85
76_L101_T0.5070.85
52_R71_S0.5040.85
57_A112_K0.5030.85
97_E101_T0.5000.84
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2rpbA 1 0.872 28.9 0.916 Contact Map
1winA 1 0.816 28 0.917 Contact Map
3bk6A 3 0.84 25.3 0.918 Contact Map
1fw8A 1 0.688 20.7 0.921 Contact Map
4dvyP 1 0.56 14.1 0.927 Contact Map
4fvgA 2 0.776 12 0.93 Contact Map
1sdoA 2 0.552 10 0.932 Contact Map
2atmA 1 0.328 9.6 0.933 Contact Map
1vpeA 1 0.672 9.5 0.933 Contact Map
4bgoA 1 0.864 9.1 0.933 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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