CDC62 - SULSO - GREMLIN Contacts

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CDC62 - ORC1-type DNA replication protein 2

UniProt:	Q9UXF8	Sequences: MVSAKDILSDSLRSSVLIIKHKDKLSPDYVPENLPHREEKIKELGFIFKDLLAGDAKDSERVVILGRTGTGKTATVRLFGKNFEDIAEREYGVKVKYVHINCYRHRTLYLISQEIANALKLPIPSRGLSAQEVFKMIHEYLDRRNIHLIVALDEFGHFLNTANTEEIYFLVRLYDEISAIIKRISYIFIVNESHSIYKLDRSIRDHIARRLIEFPPYKSMELYDILKYRVDEAFNDNAVDDEVLQFISNTYGYDKGGNGNARIAIETLSLAGEIAEKEGSPVVLLDHAKKANSTINPEIQEIIDSLSYLDLHQLILLKALIRALNKTKADEITMGTLEEEYISLSREFNEEPRRHTQVYEYLRKLKVIGIINTRQSGKGMRGRTTLVSLSLPLDKRLDDYIMQQIMVRLKSRA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	413 (364)
Sequences:	1661 (1211)
Seq/√Len:	63.5

HALSA - CDC6A CDC64 CDC68 CDC65 CDC67 CDC66 Q9HNS7 CDC69 CDC62
SULSO - CDC62 CDC61 CDC63

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
280_S	287_H	5.107	1.00
222_L	261_A	4.905	1.00
278_E	287_H	4.760	1.00
134_F	138_H	4.534	1.00
44_L	62_V	4.096	1.00
320_L	371_I	4.080	1.00
102_C	152_L	3.910	1.00
36_H	224_D	3.525	1.00
312_H	341_Y	3.360	1.00
133_V	141_L	3.242	1.00
40_K	215_P	3.172	1.00
234_F	272_G	3.154	1.00
310_D	313_Q	3.091	1.00
134_F	137_I	3.025	1.00
168_Y	202_S	2.961	1.00
312_H	352_P	2.932	1.00
80_G	151_A	2.744	1.00
278_E	290_K	2.724	1.00
137_I	141_L	2.683	1.00
34_L	74_A	2.576	1.00
202_S	206_H	2.443	1.00
154_E	191_N	2.434	1.00
114_E	117_N	2.378	1.00
114_E	118_A	2.373	1.00
37_R	217_Y	2.350	1.00
239_V	283_V	2.330	1.00
234_F	238_A	2.316	1.00
37_R	40_K	2.259	1.00
19_I	272_G	2.229	1.00
155_F	188_F	2.202	1.00
245_Q	249_N	2.182	1.00
77_R	99_H	2.154	1.00
132_E	136_M	2.130	1.00
156_G	191_N	2.048	1.00
357_Q	360_E	2.028	1.00
25_L	233_A	2.021	1.00
47_I	62_V	2.010	1.00
25_L	229_R	2.008	1.00
200_D	203_I	2.006	1.00
137_I	140_Y	1.973	1.00
22_K	273_E	1.966	1.00
130_A	138_H	1.913	1.00
194_H	198_K	1.884	1.00
48_F	79_F	1.811	1.00
168_Y	205_D	1.807	1.00
75_T	214_F	1.776	1.00
62_V	187_I	1.739	0.99
246_F	289_K	1.711	0.99
223_Y	227_K	1.702	0.99
217_Y	262_R	1.687	0.99
303_I	307_S	1.679	0.99
172_R	206_H	1.674	0.99
218_K	221_E	1.661	0.99
338_E	358_V	1.657	0.99
168_Y	206_H	1.653	0.99
332_I	337_L	1.653	0.99
217_Y	225_I	1.650	0.99
227_K	241_D	1.644	0.99
41_I	75_T	1.641	0.99
223_Y	245_Q	1.632	0.99
250_T	253_Y	1.630	0.99
45_G	82_N	1.616	0.99
202_S	205_D	1.593	0.99
129_S	133_V	1.585	0.99
25_L	31_P	1.585	0.99
205_D	208_A	1.566	0.99
287_H	291_A	1.539	0.99
111_I	166_E	1.510	0.98
268_L	291_A	1.479	0.98
274_I	287_H	1.469	0.98
131_Q	135_K	1.458	0.98
101_N	168_Y	1.451	0.98
138_H	141_L	1.444	0.98
214_F	217_Y	1.438	0.98
22_K	276_E	1.423	0.98
168_Y	172_R	1.422	0.98
44_L	95_V	1.421	0.98
239_V	245_Q	1.420	0.98
335_G	383_R	1.417	0.98
271_A	283_V	1.411	0.98
226_L	264_A	1.409	0.98
48_F	52_L	1.395	0.97
392_P	395_K	1.383	0.97
66_G	71_G	1.373	0.97
191_N	259_G	1.372	0.97
271_A	291_A	1.357	0.97
136_M	140_Y	1.338	0.97
134_F	141_L	1.334	0.97
129_S	134_F	1.316	0.96
97_Y	151_A	1.305	0.96
130_A	134_F	1.303	0.96
185_S	189_I	1.290	0.96
164_T	168_Y	1.288	0.96
246_F	250_T	1.287	0.96
219_S	249_N	1.286	0.96
128_L	141_L	1.281	0.96
112_S	173_L	1.280	0.96
251_Y	267_T	1.277	0.96
41_I	78_L	1.272	0.96
245_Q	253_Y	1.267	0.96
395_K	399_D	1.259	0.95
267_T	292_N	1.253	0.95
321_I	396_R	1.246	0.95
191_N	214_F	1.239	0.95
48_F	341_Y	1.238	0.95
306_L	396_R	1.235	0.95
171_V	174_Y	1.234	0.95
249_N	253_Y	1.229	0.95
337_L	387_V	1.222	0.95
129_S	137_I	1.221	0.95
309_L	365_L	1.218	0.94
193_S	260_N	1.217	0.94
133_V	138_H	1.217	0.94
334_M	358_V	1.209	0.94
217_Y	229_R	1.208	0.94
320_L	337_L	1.204	0.94
288_A	293_S	1.203	0.94
108_L	112_S	1.199	0.94
62_V	119_L	1.192	0.94
128_L	132_E	1.191	0.94
226_L	244_L	1.186	0.94
51_L	147_H	1.182	0.94
102_C	111_I	1.180	0.93
37_R	229_R	1.179	0.93
229_R	265_I	1.173	0.93
61_R	209_R	1.171	0.93
264_A	272_G	1.162	0.93
129_S	138_H	1.156	0.93
30_V	328_K	1.142	0.92
128_L	137_I	1.139	0.92
332_I	336_T	1.137	0.92
62_V	212_I	1.129	0.92
222_L	226_L	1.128	0.92
76_V	189_I	1.128	0.92
35_P	228_Y	1.126	0.92
224_D	227_K	1.125	0.92
205_D	260_N	1.125	0.92
341_Y	352_P	1.125	0.92
319_A	322_R	1.115	0.91
223_Y	248_S	1.113	0.91
272_G	275_A	1.112	0.91
65_L	211_L	1.099	0.91
155_F	191_N	1.094	0.91
116_A	122_P	1.094	0.91
397_L	401_I	1.093	0.91
84_E	97_Y	1.093	0.91
106_R	110_L	1.093	0.91
283_V	288_A	1.090	0.90
260_N	263_I	1.089	0.90
126_R	129_S	1.088	0.90
217_Y	260_N	1.083	0.90
335_G	384_T	1.081	0.90
196_I	211_L	1.079	0.90
311_L	315_I	1.077	0.90
128_L	133_V	1.071	0.90
261_A	264_A	1.068	0.89
214_F	262_R	1.062	0.89
323_A	365_L	1.062	0.89
240_D	282_V	1.061	0.89
43_E	290_K	1.054	0.89
39_E	140_Y	1.047	0.89
129_S	132_E	1.044	0.88
242_E	245_Q	1.040	0.88
268_L	288_A	1.039	0.88
197_Y	202_S	1.034	0.88
149_I	287_H	1.029	0.88
135_K	138_H	1.026	0.87
66_G	69_G	1.023	0.87
67_R	265_I	1.021	0.87
48_F	187_I	1.015	0.87
63_V	112_S	1.015	0.87
69_G	154_E	1.010	0.87
101_N	154_E	1.009	0.87
111_I	115_I	1.009	0.87
338_E	341_Y	1.007	0.87
309_L	368_I	1.003	0.86
41_I	184_I	0.998	0.86
238_A	241_D	0.997	0.86
137_I	278_E	0.996	0.86
164_T	203_I	0.994	0.86
123_I	127_G	0.992	0.86
64_I	76_V	0.992	0.86
251_Y	292_N	0.986	0.85
338_E	355_H	0.983	0.85
70_T	221_E	0.982	0.85
269_S	273_E	0.981	0.85
130_A	140_Y	0.976	0.85
271_A	287_H	0.976	0.85
136_M	139_E	0.975	0.85
39_E	239_V	0.975	0.85
40_K	214_F	0.973	0.85
117_N	149_I	0.972	0.85
69_G	153_D	0.971	0.84
259_G	262_R	0.967	0.84
342_I	370_I	0.966	0.84
291_A	294_T	0.965	0.84
47_I	186_Y	0.964	0.84
266_E	269_S	0.963	0.84
137_I	142_D	0.961	0.84
155_F	195_S	0.960	0.84
63_V	190_V	0.958	0.84
151_A	189_I	0.958	0.84
167_I	188_F	0.956	0.84
102_C	312_H	0.955	0.83
133_V	137_I	0.941	0.83
250_T	289_K	0.937	0.82
214_F	259_G	0.929	0.82
130_A	139_E	0.928	0.82
37_R	265_I	0.921	0.81
131_Q	138_H	0.920	0.81
116_A	120_K	0.917	0.81
313_Q	364_K	0.912	0.81
248_S	252_G	0.912	0.81
47_I	212_I	0.912	0.81
133_V	136_M	0.911	0.80
359_Y	385_T	0.910	0.80
131_Q	134_F	0.907	0.80
357_Q	361_Y	0.906	0.80
171_V	209_R	0.902	0.80
155_F	237_N	0.899	0.80
274_I	291_A	0.889	0.79
394_D	398_D	0.889	0.79
68_T	191_N	0.888	0.79
126_R	132_E	0.887	0.79
158_F	166_E	0.884	0.78
116_A	121_L	0.882	0.78
243_V	288_A	0.876	0.78
286_D	289_K	0.872	0.77
164_T	172_R	0.870	0.77
366_K	371_I	0.869	0.77
270_L	273_E	0.865	0.77
243_V	247_I	0.857	0.76
203_I	206_H	0.857	0.76
18_I	21_H	0.854	0.76
252_G	259_G	0.851	0.76
217_Y	259_G	0.849	0.76
72_K	154_E	0.847	0.75
168_Y	203_I	0.838	0.75
319_A	344_L	0.837	0.75
62_V	322_R	0.836	0.74
105_H	112_S	0.836	0.74
388_S	396_R	0.835	0.74
268_L	271_A	0.834	0.74
353_R	361_Y	0.832	0.74
42_K	275_A	0.832	0.74
153_D	259_G	0.827	0.74
61_R	152_L	0.826	0.74
201_R	367_V	0.824	0.73
188_F	193_S	0.824	0.73
342_I	346_R	0.823	0.73
189_I	217_Y	0.822	0.73
192_E	209_R	0.821	0.73
212_I	289_K	0.818	0.73
108_L	158_F	0.818	0.73
46_F	118_A	0.818	0.73
98_V	118_A	0.816	0.73
333_T	370_I	0.815	0.73
57_K	61_R	0.815	0.73
47_I	188_F	0.813	0.72
155_F	158_F	0.813	0.72
21_H	25_L	0.812	0.72
129_S	141_L	0.812	0.72
66_G	72_K	0.812	0.72
348_F	371_I	0.807	0.72
107_T	147_H	0.802	0.71
261_A	289_K	0.801	0.71
37_R	225_I	0.801	0.71
188_F	191_N	0.800	0.71
196_I	361_Y	0.800	0.71
37_R	260_N	0.799	0.71
333_T	336_T	0.797	0.71
168_Y	199_L	0.797	0.71
76_V	206_H	0.789	0.70
384_T	387_V	0.788	0.70
325_N	328_K	0.787	0.70
118_A	205_D	0.786	0.70
64_I	139_E	0.785	0.70
355_H	359_Y	0.783	0.69
63_V	155_F	0.783	0.69
252_G	269_S	0.780	0.69
134_F	199_L	0.779	0.69
217_Y	265_I	0.777	0.69
390_S	395_K	0.776	0.69
217_Y	222_L	0.775	0.69
202_S	208_A	0.774	0.69
153_D	225_I	0.773	0.68
80_G	97_Y	0.768	0.68
100_I	111_I	0.768	0.68
229_R	261_A	0.767	0.68
315_I	335_G	0.763	0.67
320_L	387_V	0.759	0.67
110_L	113_Q	0.759	0.67
354_R	360_E	0.757	0.67
132_E	135_K	0.755	0.67
76_V	196_I	0.753	0.66
21_H	29_Y	0.752	0.66
20_K	24_K	0.751	0.66
104_R	167_I	0.750	0.66
302_I	370_I	0.749	0.66
171_V	206_H	0.747	0.66
146_I	158_F	0.746	0.66
326_K	349_N	0.745	0.66
101_N	260_N	0.745	0.66
329_A	332_I	0.740	0.65
187_I	307_S	0.740	0.65
285_L	289_K	0.737	0.65
170_L	173_L	0.735	0.65
115_I	333_T	0.734	0.64
100_I	118_A	0.732	0.64
127_G	141_L	0.732	0.64
129_S	136_M	0.730	0.64
246_F	285_L	0.722	0.63
154_E	262_R	0.722	0.63
372_N	390_S	0.718	0.63
24_K	29_Y	0.718	0.63
309_L	370_I	0.716	0.63
33_N	228_Y	0.716	0.63
306_L	391_L	0.715	0.62
38_E	394_D	0.712	0.62
64_I	225_I	0.711	0.62
18_I	272_G	0.711	0.62
352_P	356_T	0.710	0.62
37_R	262_R	0.710	0.62
167_I	202_S	0.708	0.62
46_F	224_D	0.708	0.62
69_G	225_I	0.707	0.62
266_E	270_L	0.706	0.61
127_G	130_A	0.705	0.61
242_E	247_I	0.705	0.61
284_L	287_H	0.705	0.61
39_E	42_K	0.703	0.61
225_I	261_A	0.698	0.61
105_H	114_E	0.697	0.60
203_I	357_Q	0.695	0.60
352_P	371_I	0.691	0.60
248_S	264_A	0.691	0.60
212_I	278_E	0.689	0.60
67_R	193_S	0.688	0.59
133_V	140_Y	0.687	0.59
102_C	341_Y	0.687	0.59
362_L	373_T	0.684	0.59
106_R	308_Y	0.681	0.59
389_L	393_L	0.680	0.59
226_L	248_S	0.680	0.59
345_S	348_F	0.678	0.58
130_A	133_V	0.678	0.58
55_D	206_H	0.676	0.58
323_A	340_E	0.676	0.58
144_R	158_F	0.673	0.58
28_D	246_F	0.673	0.58
76_V	115_I	0.672	0.58
100_I	115_I	0.672	0.58
247_I	263_I	0.669	0.57
77_R	97_Y	0.668	0.57
227_K	371_I	0.667	0.57
96_K	146_I	0.667	0.57
65_L	190_V	0.666	0.57
130_A	141_L	0.662	0.57
199_L	208_A	0.659	0.56
126_R	134_F	0.658	0.56
115_I	122_P	0.655	0.56
44_L	136_M	0.655	0.56
306_L	322_R	0.654	0.56
306_L	339_E	0.654	0.56
173_L	190_V	0.653	0.56
64_I	187_I	0.653	0.56
235_N	374_R	0.651	0.55
48_F	288_A	0.646	0.55
42_K	81_K	0.643	0.54
247_I	289_K	0.643	0.54
254_D	310_D	0.641	0.54
49_K	86_I	0.641	0.54
81_K	149_I	0.640	0.54
20_K	235_N	0.639	0.54
393_L	401_I	0.639	0.54
111_I	116_A	0.637	0.54
310_D	315_I	0.635	0.53
243_V	283_V	0.633	0.53
26_S	30_V	0.632	0.53
72_K	153_D	0.632	0.53
275_A	283_V	0.632	0.53
265_I	273_E	0.632	0.53
73_T	154_E	0.631	0.53
244_L	248_S	0.631	0.53
251_Y	254_D	0.630	0.53
355_H	361_Y	0.630	0.53
353_R	357_Q	0.629	0.53
61_R	115_I	0.629	0.53
42_K	46_F	0.628	0.53
395_K	398_D	0.628	0.53
81_K	85_D	0.627	0.53
227_K	230_V	0.625	0.52
359_Y	362_L	0.624	0.52
167_I	205_D	0.624	0.52
65_L	191_N	0.623	0.52
31_P	229_R	0.622	0.52
220_M	223_Y	0.622	0.52
231_D	377_G	0.621	0.52
188_F	247_I	0.620	0.52
216_P	291_A	0.620	0.52
79_F	83_F	0.618	0.52
335_G	387_V	0.617	0.51
115_I	150_V	0.617	0.51
149_I	207_I	0.614	0.51
224_D	371_I	0.614	0.51
222_L	265_I	0.613	0.51
130_A	137_I	0.612	0.51
275_A	291_A	0.611	0.51
251_Y	264_A	0.610	0.51
102_C	203_I	0.609	0.50
49_K	53_A	0.609	0.50
63_V	173_L	0.605	0.50
146_I	237_N	0.603	0.50
111_I	170_L	0.603	0.50
320_L	389_L	0.602	0.50
152_L	290_K	0.600	0.49
316_L	358_V	0.600	0.49
222_L	264_A	0.597	0.49
37_R	214_F	0.597	0.49
264_A	275_A	0.595	0.49
37_R	222_L	0.593	0.49
203_I	209_R	0.592	0.49
68_T	367_V	0.591	0.48
261_A	310_D	0.590	0.48
223_Y	240_D	0.589	0.48
69_G	259_G	0.589	0.48
170_L	202_S	0.589	0.48
317_L	389_L	0.588	0.48
312_H	315_I	0.588	0.48
218_K	293_S	0.588	0.48
242_E	272_G	0.588	0.48
102_C	167_I	0.587	0.48
24_K	31_P	0.586	0.48
387_V	392_P	0.585	0.48
259_G	273_E	0.583	0.47
76_V	228_Y	0.583	0.47
172_R	205_D	0.582	0.47
60_E	188_F	0.580	0.47
127_G	138_H	0.580	0.47
290_K	294_T	0.579	0.47
43_E	46_F	0.578	0.47
74_A	171_V	0.578	0.47
36_H	260_N	0.578	0.47
127_G	131_Q	0.575	0.47
231_D	239_V	0.575	0.47
57_K	185_S	0.574	0.46
134_F	170_L	0.574	0.46
67_R	323_A	0.574	0.46
38_E	149_I	0.573	0.46
325_N	397_L	0.571	0.46
19_I	22_K	0.571	0.46
139_E	306_L	0.569	0.46
251_Y	265_I	0.569	0.46
131_Q	139_E	0.568	0.46
85_D	220_M	0.567	0.46
238_A	245_Q	0.567	0.46
284_L	343_S	0.567	0.46
339_E	400_Y	0.566	0.46
274_I	294_T	0.566	0.46
112_S	174_Y	0.565	0.45
23_D	27_P	0.564	0.45
191_N	217_Y	0.564	0.45
74_A	216_P	0.564	0.45
214_F	260_N	0.563	0.45
51_L	60_E	0.563	0.45
158_F	314_L	0.561	0.45
218_K	242_E	0.560	0.45
68_T	230_V	0.559	0.45
188_F	209_R	0.559	0.45
375_Q	385_T	0.558	0.45
206_H	209_R	0.556	0.44
67_R	310_D	0.555	0.44
338_E	342_I	0.555	0.44
100_I	333_T	0.554	0.44
111_I	205_D	0.553	0.44
164_T	206_H	0.553	0.44
100_I	106_R	0.553	0.44
172_R	175_D	0.553	0.44
117_N	371_I	0.553	0.44
241_D	319_A	0.551	0.44
302_I	396_R	0.550	0.44
61_R	192_E	0.549	0.44
341_Y	345_S	0.547	0.43
20_K	39_E	0.547	0.43
320_L	377_G	0.547	0.43
247_I	288_A	0.547	0.43
319_A	378_K	0.547	0.43
192_E	200_D	0.546	0.43
289_K	292_N	0.545	0.43
260_N	267_T	0.543	0.43
192_E	198_K	0.542	0.43
339_E	354_R	0.542	0.43
312_H	345_S	0.541	0.43
339_E	343_S	0.541	0.43
252_G	264_A	0.540	0.43
100_I	331_E	0.540	0.43
317_L	365_L	0.539	0.42
264_A	268_L	0.538	0.42
170_L	247_I	0.535	0.42
40_K	221_E	0.535	0.42
226_L	229_R	0.534	0.42
53_A	135_K	0.534	0.42
53_A	302_I	0.533	0.42
123_I	133_V	0.532	0.42
44_L	395_K	0.530	0.41
306_L	309_L	0.530	0.41
65_L	158_F	0.529	0.41
275_A	335_G	0.528	0.41
63_V	171_V	0.526	0.41
371_I	379_G	0.525	0.41
34_L	244_L	0.524	0.41
216_P	259_G	0.523	0.41
235_N	238_A	0.522	0.41
43_E	284_L	0.521	0.40
120_K	140_Y	0.520	0.40
221_E	288_A	0.519	0.40
191_N	262_R	0.519	0.40
246_F	292_N	0.518	0.40
284_L	398_D	0.517	0.40
117_N	400_Y	0.517	0.40
258_N	269_S	0.517	0.40
99_H	151_A	0.516	0.40
67_R	190_V	0.516	0.40
127_G	134_F	0.516	0.40
184_I	197_Y	0.515	0.40
191_N	222_L	0.512	0.39
76_V	185_S	0.512	0.39
279_G	290_K	0.511	0.39
34_L	396_R	0.511	0.39
304_D	379_G	0.511	0.39
55_D	139_E	0.511	0.39
330_D	372_N	0.510	0.39
112_S	161_T	0.509	0.39
239_V	243_V	0.509	0.39
261_A	265_I	0.509	0.39
48_F	205_D	0.509	0.39
20_K	85_D	0.509	0.39
70_T	101_N	0.508	0.39
43_E	142_D	0.507	0.39
274_I	383_R	0.507	0.39
316_L	374_R	0.505	0.39
388_S	401_I	0.504	0.39
81_K	290_K	0.503	0.38
315_I	341_Y	0.503	0.38
74_A	105_H	0.502	0.38
143_R	371_I	0.500	0.38

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2qbyA	1	0.8838	100	0.358	Contact Map
4xgcA	1	0.7482	100	0.366	Contact Map
2v1uA	1	0.9225	100	0.367	Contact Map
1w5sA	1	0.9225	100	0.432	Contact Map
2qbyB	1	0.8717	100	0.443	Contact Map
4xgcD	1	0.9153	100	0.462	Contact Map
1fnnA	1	0.9007	100	0.466	Contact Map
3te6A	1	0.6538	100	0.582	Contact Map
4xgcE	1	0.8136	100	0.634	Contact Map
4ko8A	3	0.6271	100	0.682	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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