GREMLIN Database
RS3 - 30S ribosomal protein S3
UniProt: Q9UXA0 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 229 (189)
Sequences: 2574 (1218)
Seq/√Len: 88.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
32_A92_N5.1821.00
96_M183_I4.2461.00
171_M176_I4.2191.00
169_I176_I3.8461.00
25_Q69_I3.8201.00
91_L126_A3.2841.00
62_N65_Q2.9671.00
46_I82_T2.8541.00
23_A94_R2.8401.00
116_I120_R2.7301.00
121_I129_A2.5391.00
132_I144_Y2.3651.00
105_E170_A2.3601.00
184_T187_L2.3151.00
108_Y113_A2.2421.00
94_R98_F2.1421.00
100_L131_I2.1091.00
98_F168_A2.1031.00
151_I184_T2.0921.00
7_Y10_E1.9861.00
49_A55_I1.9581.00
93_A164_D1.9201.00
26_Y55_I1.8901.00
33_G48_Y1.8131.00
104_L110_F1.7501.00
17_K73_V1.7041.00
23_A98_F1.6711.00
13_I17_K1.6641.00
94_R168_A1.6021.00
48_Y84_T1.5951.00
161_K184_T1.5941.00
94_R167_I1.5801.00
94_R166_A1.5521.00
100_L113_A1.5391.00
132_I146_K1.4961.00
13_I16_V1.4941.00
21_Y69_I1.4700.99
64_K68_Q1.4540.99
148_K151_I1.4050.99
127_L151_I1.3960.99
162_M185_K1.3960.99
133_I177_F1.3920.99
114_A147_L1.3920.99
148_K152_V1.3700.99
91_L121_I1.3640.99
110_F137_L1.3600.99
22_L34_V1.3550.99
26_Y66_L1.3240.99
97_A168_A1.3210.99
104_L177_F1.3190.99
42_G78_N1.3180.99
46_I84_T1.3090.99
59_G116_I1.3080.99
65_Q69_I1.2930.99
118_M129_A1.2920.99
65_Q68_Q1.2860.99
191_D194_N1.2800.99
57_G60_G1.2770.99
22_L31_Y1.2770.99
16_V20_E1.2670.98
134_S144_Y1.2580.98
97_A179_V1.2530.98
8_F12_S1.2340.98
12_S16_V1.2240.98
30_E49_A1.2240.98
37_L44_R1.2210.98
68_Q72_K1.2150.98
14_V77_E1.2140.98
8_F13_I1.2080.98
118_M131_I1.1950.98
25_Q65_Q1.1880.98
99_R102_I1.1810.98
96_M117_S1.1590.97
130_E154_K1.1550.97
29_A49_A1.1530.97
97_A181_V1.1490.97
17_K20_E1.1470.97
100_L117_S1.1460.97
102_I106_K1.1450.97
22_L26_Y1.1430.97
53_S85_N1.1350.97
146_K151_I1.1300.97
114_A133_I1.1150.97
101_A179_V1.1100.96
9_L13_I1.0990.96
63_I74_F1.0930.96
101_A168_A1.0800.96
29_A54_M1.0720.96
22_L45_V1.0600.95
88_N124_A1.0580.95
115_F138_T1.0560.95
68_Q71_E1.0560.95
98_F102_I1.0470.95
71_E78_N1.0390.95
119_R149_E1.0290.95
96_M121_I1.0200.94
33_G92_N1.0100.94
162_M188_K1.0020.94
52_P56_I0.9510.92
193_I196_K0.9480.92
136_K174_P0.9450.92
23_A27_Y0.9450.92
21_Y70_F0.9390.91
121_I183_I0.9270.91
10_E77_E0.9250.91
109_H138_T0.9240.91
31_Y47_I0.9100.90
61_R65_Q0.9090.90
24_K27_Y0.9040.90
120_R123_N0.8990.89
137_L174_P0.8970.89
74_F79_P0.8950.89
119_R123_N0.8910.89
190_E193_I0.8820.89
191_D195_L0.8800.88
110_F145_E0.8770.88
131_I147_L0.8730.88
99_R103_A0.8700.88
42_G80_Q0.8670.88
91_L183_I0.8410.86
53_S56_I0.8400.86
74_F77_E0.8400.86
55_I83_I0.8390.86
53_S57_G0.8350.86
191_D196_K0.8330.86
153_Y161_K0.8270.85
164_D185_K0.8250.85
53_S60_G0.8180.85
43_T77_E0.8120.84
53_S58_R0.8110.84
91_L185_K0.8110.84
118_M147_L0.7960.83
90_E124_A0.7890.82
20_E24_K0.7770.81
70_F79_P0.7770.81
146_K152_V0.7770.81
7_Y11_K0.7760.81
110_F138_T0.7720.81
35_E48_Y0.7720.81
56_I60_G0.7690.81
30_E50_G0.7680.81
59_G120_R0.7670.81
152_V184_T0.7630.80
44_R82_T0.7620.80
189_I193_I0.7570.80
10_E13_I0.7570.80
190_E194_N0.7450.79
118_M149_E0.7380.78
60_G85_N0.7350.78
154_K182_V0.7350.78
165_R182_V0.7340.78
26_Y47_I0.7310.77
118_M184_T0.7300.77
15_K19_D0.7260.77
131_I146_K0.7220.76
161_K186_P0.7190.76
104_L145_E0.7190.76
73_V79_P0.7180.76
29_A52_P0.7160.76
108_Y112_R0.7140.76
60_G63_I0.7120.75
113_A133_I0.7100.75
134_S141_R0.7090.75
132_I148_K0.6990.74
153_Y184_T0.6990.74
115_F142_A0.6950.74
88_N91_L0.6910.73
131_I179_V0.6900.73
111_R145_E0.6900.73
110_F173_K0.6850.73
38_K93_A0.6840.72
35_E62_N0.6810.72
5_K9_L0.6810.72
157_Q161_K0.6780.72
21_Y25_Q0.6740.71
51_R90_E0.6710.71
71_E80_Q0.6700.71
116_I119_R0.6700.71
14_V17_K0.6660.70
127_L184_T0.6560.69
106_K141_R0.6520.69
104_L111_R0.6500.69
24_K73_V0.6450.68
7_Y59_G0.6430.68
157_Q184_T0.6420.68
122_M126_A0.6420.68
35_E46_I0.6410.68
20_E63_I0.6390.67
115_F154_K0.6380.67
90_E120_R0.6370.67
31_Y49_A0.6340.67
39_T42_G0.6340.67
26_Y31_Y0.6300.66
114_A166_A0.6290.66
15_K107_G0.6260.66
49_A137_L0.6250.66
11_K14_V0.6240.65
97_A166_A0.6200.65
43_T74_F0.6190.65
165_R180_E0.6190.65
91_L124_A0.6180.65
100_L181_V0.6160.64
13_I179_V0.6150.64
112_R116_I0.6140.64
44_R106_K0.6110.64
130_E136_K0.6080.63
65_Q72_K0.6050.63
119_R124_A0.6050.63
39_T44_R0.6040.63
101_A105_E0.6020.63
19_D153_Y0.5980.62
133_I138_T0.5970.62
137_L177_F0.5970.62
44_R188_K0.5970.62
121_I126_A0.5960.62
90_E96_M0.5920.61
14_V74_F0.5890.61
174_P177_F0.5850.60
24_K191_D0.5850.60
146_K174_P0.5820.60
27_Y105_E0.5800.60
192_K195_L0.5790.60
135_G175_G0.5750.59
106_K146_K0.5750.59
6_R80_Q0.5740.59
127_L186_P0.5730.59
19_D140_E0.5700.59
9_L12_S0.5700.59
119_R190_E0.5700.59
37_L46_I0.5690.58
38_K143_R0.5680.58
51_R57_G0.5660.58
15_K36_V0.5650.58
128_G135_G0.5650.58
141_R146_K0.5620.57
104_L117_S0.5620.57
41_I191_D0.5620.57
41_I78_N0.5610.57
130_E138_T0.5610.57
5_K146_K0.5590.57
35_E84_T0.5540.56
154_K172_L0.5520.56
141_R144_Y0.5510.56
63_I83_I0.5500.56
89_P125_G0.5490.56
173_K186_P0.5480.56
136_K182_V0.5470.55
39_T116_I0.5460.55
58_R88_N0.5460.55
24_K72_K0.5400.54
121_I185_K0.5390.54
52_P57_G0.5370.54
114_A131_I0.5350.54
158_Q182_V0.5350.54
192_K196_K0.5340.54
28_N88_N0.5340.54
19_D36_V0.5340.54
190_E196_K0.5330.54
45_V81_I0.5290.53
44_R65_Q0.5280.53
102_I116_I0.5270.53
126_A137_L0.5270.53
99_R152_V0.5260.53
18_I74_F0.5260.53
12_S15_K0.5260.53
16_V152_V0.5240.52
50_G95_V0.5220.52
153_Y180_E0.5220.52
15_K153_Y0.5210.52
139_T177_F0.5200.52
136_K165_R0.5190.52
51_R70_F0.5190.52
42_G77_E0.5180.51
170_A177_F0.5100.50
39_T67_A0.5100.50
18_I80_Q0.5090.50
136_K172_L0.5050.50
65_Q81_I0.5050.50
107_G154_K0.5030.49
5_K16_V0.5010.49
14_V22_L0.5010.49
150_G178_G0.5010.49
128_G175_G0.5000.49
22_L51_R0.5000.49
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4rb5C 1 0.8079 100 0.145 Contact Map
3j20C 1 0.8035 100 0.147 Contact Map
4kiyC 1 0.8079 100 0.157 Contact Map
3j7aD 1 0.6725 100 0.164 Contact Map
4tp8C 1 0.8079 100 0.166 Contact Map
3zeyX 1 0.8865 100 0.167 Contact Map
4w23D 1 0.9694 100 0.175 Contact Map
3bbnC 1 0.8079 100 0.182 Contact Map
4ujpE 1 0.9258 100 0.189 Contact Map
4bpeC 1 0.952 100 0.189 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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