GREMLIN Database
RS17 - 30S ribosomal protein S17P
UniProt: Q9UX98 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 114 (103)
Sequences: 385 (181)
Seq/√Len: 17.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
55_V78_H4.6571.00
96_G110_L4.1391.00
81_V87_V4.0911.00
53_A105_I3.9871.00
23_C31_H3.5431.00
79_A95_I2.7170.98
56_I95_I2.3400.94
30_Y98_C2.1460.91
54_A81_V2.1110.91
11_P110_L1.9550.87
77_I95_I1.9300.86
47_K97_E1.8280.83
97_E106_S1.7980.82
57_E76_R1.6930.78
31_H84_C1.6790.77
63_Y68_K1.6680.76
17_T20_E1.5010.68
46_V54_A1.4760.67
28_C31_H1.3860.62
49_R53_A1.3790.62
54_A109_V1.3410.59
23_C84_C1.3300.59
28_C84_C1.3120.58
68_K72_R1.2920.56
42_E92_K1.2760.55
19_P28_C1.2730.55
59_Q74_R1.2130.52
45_I54_A1.2070.51
17_T40_T1.2030.51
56_I92_K1.2000.51
48_Y81_V1.1770.49
68_K111_G1.1410.47
48_Y89_E1.1380.47
16_I34_L1.1310.47
45_I81_V1.1220.46
23_C85_I1.1140.46
25_D88_R1.1010.45
69_R90_G1.0900.44
77_I89_E1.0880.44
10_D59_Q1.0760.43
13_I107_F1.0750.43
27_D101_L1.0720.43
27_D33_S1.0680.43
44_V51_T1.0620.42
42_E46_V1.0470.42
98_C111_G1.0400.41
94_I111_G1.0230.40
19_P31_H1.0200.40
23_C28_C0.9940.38
72_R100_P0.9880.38
43_G80_H0.9660.37
56_I98_C0.9590.36
24_E31_H0.9560.36
36_V108_V0.9540.36
87_V105_I0.9450.36
44_V92_K0.9450.36
76_R96_G0.9390.35
48_Y79_A0.9390.35
27_D80_H0.9360.35
50_G72_R0.9340.35
16_I23_C0.9320.35
75_S92_K0.9260.35
69_R73_R0.9240.34
34_L41_L0.9210.34
74_R96_G0.9100.34
81_V84_C0.8900.33
15_N39_I0.8790.32
57_E74_R0.8620.31
66_K93_V0.8540.31
105_I110_L0.8410.30
16_I110_L0.8350.30
102_S105_I0.8080.28
35_R39_I0.8040.28
8_V86_N0.8000.28
24_E49_R0.7830.27
40_T81_V0.7770.27
21_K88_R0.7690.26
54_A79_A0.7680.26
27_D34_L0.7510.26
78_H102_S0.7510.26
11_P32_G0.7460.25
9_K60_Y0.7400.25
12_G58_R0.7380.25
69_R102_S0.7240.24
46_V79_A0.7240.24
48_Y54_A0.7230.24
21_K50_G0.7230.24
17_T33_S0.7160.24
58_R98_C0.7130.24
41_L52_K0.7110.24
40_T96_G0.7050.24
70_Y100_P0.7020.23
10_D13_I0.6980.23
42_E94_I0.6980.23
64_D71_E0.6930.23
81_V105_I0.6890.23
27_D30_Y0.6860.23
44_V59_Q0.6850.23
46_V89_E0.6840.23
82_P85_I0.6830.23
41_L60_Y0.6760.22
33_S92_K0.6730.22
39_I63_Y0.6720.22
42_E89_E0.6700.22
55_V106_S0.6580.22
34_L82_P0.6540.21
46_V77_I0.6470.21
16_I92_K0.6440.21
51_T75_S0.6420.21
41_L74_R0.6370.21
30_Y58_R0.6350.21
9_K35_R0.6350.21
32_G91_D0.6310.20
13_I36_V0.6210.20
41_L64_D0.6190.20
62_Y71_E0.6170.20
52_K83_P0.6140.20
69_R103_K0.6110.20
35_R98_C0.6070.19
37_R43_G0.6060.19
41_L101_L0.6060.19
70_Y94_I0.6030.19
58_R69_R0.6020.19
80_H83_P0.6010.19
99_R103_K0.5970.19
34_L101_L0.5880.19
39_I72_R0.5840.19
58_R72_R0.5800.18
26_E33_S0.5780.18
42_E88_R0.5730.18
73_R89_E0.5710.18
21_K111_G0.5650.18
11_P106_S0.5610.18
25_D28_C0.5450.17
19_P84_C0.5440.17
57_E69_R0.5390.17
47_K110_L0.5380.17
22_V85_I0.5380.17
60_Y63_Y0.5370.17
80_H101_L0.5340.17
55_V109_V0.5320.17
26_E101_L0.5250.17
30_Y94_I0.5210.16
15_N96_G0.5190.16
15_N72_R0.5150.16
41_L95_I0.5100.16
83_P100_P0.5090.16
65_S75_S0.5070.16
26_E58_R0.5070.16
30_Y35_R0.5070.16
56_I64_D0.5070.16
71_E99_R0.5060.16
23_C27_D0.5040.16
12_G29_P0.5000.16
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4w23L 1 0.9912 100 0.271 Contact Map
3zeyE 1 0.9912 100 0.271 Contact Map
3j60L 1 0.7105 100 0.272 Contact Map
3j7aV 1 0.9474 100 0.273 Contact Map
4ujpM 1 0.9912 100 0.274 Contact Map
4bpeQ 1 0.9912 100 0.276 Contact Map
3j20R 1 0.9386 100 0.283 Contact Map
3bbnQ 1 0.6579 100 0.422 Contact Map
4rb5Q 1 0.6754 99.9 0.551 Contact Map
1qd7I 1 0.6754 99.9 0.552 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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