GREMLIN Database
RS5 - 30S ribosomal protein S5
UniProt: Q9UX87 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 214 (170)
Sequences: 959 (463)
Seq/√Len: 35.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
55_K85_M3.5801.00
59_V191_V3.5581.00
84_N88_Y3.4461.00
76_Y99_L3.4041.00
119_R173_I3.3251.00
164_L178_S2.7761.00
196_S200_N2.7481.00
154_K175_D2.6891.00
153_P177_W2.6001.00
80_V106_A2.5681.00
58_V61_I2.5621.00
134_L201_T2.5221.00
137_K151_P2.4951.00
67_Q72_E2.4751.00
67_Q74_S2.3550.99
81_I167_L2.3350.99
55_K170_Y2.2520.99
91_I192_R2.1760.99
67_Q70_A2.0900.99
152_A156_T2.0600.99
202_Y210_W2.0480.99
196_S199_Y2.0070.98
93_T188_E2.0030.98
62_K77_K1.8660.97
149_L197_A1.8610.97
135_P201_T1.7360.96
158_L168_L1.7060.95
43_E46_I1.7030.95
58_V80_V1.7030.95
81_I166_T1.7030.95
168_L176_A1.6550.95
137_K150_L1.6420.94
63_V74_S1.6060.94
113_N178_S1.5500.92
132_H175_D1.5240.92
43_E50_L1.5040.91
94_G105_K1.4800.91
163_V190_F1.4760.91
208_Q212_R1.4730.90
107_I111_K1.4610.90
53_K86_D1.3950.88
101_V104_Q1.3810.87
87_G95_K1.3750.87
106_A172_G1.3710.87
91_I191_V1.3540.86
140_G196_S1.2940.84
43_E132_H1.2850.83
90_S155_G1.2760.83
86_D119_R1.2490.81
138_V201_T1.2490.81
119_R195_Y1.2480.81
116_P176_A1.2360.81
139_V146_E1.2320.80
66_K156_T1.2010.79
87_G119_R1.1830.78
160_V178_S1.1800.77
156_T161_G1.1700.77
187_T191_V1.1630.76
133_S175_D1.1560.76
33_E36_D1.1560.76
62_K187_T1.1480.75
42_T45_E1.1390.75
109_D113_N1.1370.75
47_V54_L1.1320.74
98_Q133_S1.1200.74
202_Y206_T1.0960.72
42_T46_I1.0950.72
207_L210_W1.0880.71
77_K91_I1.0680.70
119_R175_D1.0670.70
94_G102_A1.0650.70
74_S77_K1.0620.70
41_I46_I1.0610.69
77_K93_T1.0580.69
156_T163_V1.0560.69
95_K105_K1.0420.68
34_L37_R1.0410.68
147_V193_A1.0350.68
192_R199_Y1.0330.67
41_I45_E1.0290.67
41_I47_V1.0260.67
36_D147_V1.0210.66
62_K108_R0.9950.64
72_E150_L0.9810.63
71_G83_G0.9730.63
80_V102_A0.9680.62
81_I170_Y0.9670.62
142_A192_R0.9640.62
134_L149_L0.9580.61
188_E192_R0.9570.61
92_G109_D0.9490.61
82_M155_G0.9370.60
85_M169_T0.9370.60
64_V75_R0.9350.60
145_V175_D0.9350.60
132_H174_K0.9250.59
93_T192_R0.9210.58
203_K206_T0.9050.57
87_G92_G0.9020.57
75_R93_T0.8950.56
115_I195_Y0.8920.56
54_L114_I0.8750.54
134_L176_A0.8650.54
139_V148_D0.8630.53
181_K184_T0.8620.53
191_V205_V0.8620.53
40_P50_L0.8590.53
56_Y104_Q0.8550.53
141_K146_E0.8490.52
151_P171_A0.8460.52
138_V200_N0.8430.52
167_L194_G0.8390.51
43_E195_Y0.8380.51
142_A196_S0.8320.51
120_G205_V0.8320.51
72_E77_K0.8290.50
82_M167_L0.8280.50
197_A210_W0.8150.49
87_G90_S0.8100.49
95_K161_G0.8060.48
42_T154_K0.7990.48
66_K70_A0.7960.48
115_I202_Y0.7940.47
62_K188_E0.7940.47
63_V76_Y0.7870.47
86_D206_T0.7800.46
110_A175_D0.7720.46
206_T209_D0.7700.45
160_V179_T0.7610.45
109_D114_I0.7590.44
92_G135_P0.7540.44
83_G90_S0.7520.44
169_T183_E0.7520.44
43_E138_V0.7440.43
114_I209_D0.7380.43
63_V70_A0.7340.42
71_G157_G0.7330.42
52_P200_N0.7320.42
131_P212_R0.7310.42
89_V167_L0.7260.42
38_N43_E0.7230.41
42_T200_N0.7220.41
60_D77_K0.7190.41
87_G172_G0.7160.41
139_V174_K0.7160.41
75_R98_Q0.7140.41
103_I192_R0.7080.40
50_L154_K0.7070.40
42_T48_D0.7060.40
58_V78_V0.7030.40
83_G193_A0.7010.40
135_P164_L0.6970.39
163_V191_V0.6960.39
58_V103_I0.6930.39
136_F160_V0.6920.39
73_I99_L0.6910.39
185_R198_L0.6890.39
138_V197_A0.6820.38
46_I116_P0.6810.38
174_K198_L0.6780.38
120_G151_P0.6720.37
54_L84_N0.6680.37
140_G143_G0.6660.37
206_T210_W0.6650.37
43_E206_T0.6650.37
59_V136_F0.6650.37
137_K168_L0.6640.37
164_L201_T0.6640.37
99_L103_I0.6610.36
149_L194_G0.6610.36
189_N192_R0.6600.36
43_E47_V0.6600.36
58_V97_K0.6590.36
140_G145_V0.6550.36
89_V115_I0.6540.36
84_N116_P0.6490.35
156_T177_W0.6440.35
88_Y114_I0.6420.35
151_P197_A0.6410.35
39_L146_E0.6400.35
90_S172_G0.6390.35
120_G184_T0.6380.35
64_V76_Y0.6360.34
92_G138_V0.6340.34
96_A102_A0.6330.34
136_F158_L0.6320.34
56_Y61_I0.6310.34
85_M114_I0.6170.33
86_D196_S0.6130.33
109_D115_I0.6130.33
56_Y73_I0.6110.32
135_P171_A0.6060.32
82_M110_A0.6030.32
98_Q142_A0.6020.32
174_K203_K0.6010.32
175_D201_T0.5980.31
132_H201_T0.5970.31
135_P151_P0.5960.31
43_E51_L0.5950.31
34_L41_I0.5930.31
79_L91_I0.5870.31
113_N184_T0.5830.30
157_G172_G0.5800.30
91_I195_Y0.5800.30
34_L39_L0.5790.30
79_L163_V0.5760.30
158_L173_I0.5760.30
62_K79_L0.5750.30
66_K168_L0.5750.30
78_V103_I0.5750.30
62_K99_L0.5700.29
109_D206_T0.5680.29
54_L82_M0.5670.29
79_L209_D0.5650.29
145_V180_T0.5630.29
139_V181_K0.5630.29
183_E198_L0.5600.29
72_E189_N0.5580.29
152_A182_G0.5550.28
33_E50_L0.5550.28
161_G211_V0.5530.28
106_A203_K0.5530.28
53_K61_I0.5530.28
85_M170_Y0.5490.28
97_K166_T0.5480.28
69_D98_Q0.5450.28
52_P133_S0.5450.28
40_P46_I0.5430.28
61_I167_L0.5430.28
45_E139_V0.5410.27
75_R96_A0.5410.27
145_V184_T0.5400.27
140_G193_A0.5370.27
118_R201_T0.5360.27
173_I212_R0.5340.27
80_V107_I0.5340.27
202_Y205_V0.5320.27
44_P139_V0.5310.27
83_G141_K0.5300.27
64_V167_L0.5280.26
184_T210_W0.5270.26
141_K198_L0.5260.26
106_A113_N0.5230.26
160_V180_T0.5170.26
81_I169_T0.5160.26
69_D183_E0.5140.26
132_H145_V0.5130.25
142_A204_F0.5130.25
108_R134_L0.5110.25
149_L178_S0.5110.25
33_E38_N0.5080.25
66_K75_R0.5030.25
46_I51_L0.5030.25
154_K174_K0.5000.25
69_D105_K0.5000.25
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3j20F 1 0.9813 100 0.056 Contact Map
3j80C 1 0.9393 100 0.088 Contact Map
4kzyC 1 0.9673 100 0.089 Contact Map
3j60C 1 0.9393 100 0.091 Contact Map
3j7aG 1 0.9439 100 0.092 Contact Map
3j38C 1 0.9579 100 0.092 Contact Map
4ujpD 1 0.9393 100 0.092 Contact Map
3zeyP 1 0.9486 100 0.094 Contact Map
4bpeE 1 0.9486 100 0.094 Contact Map
5a2qC 1 0.9393 100 0.122 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0074 seconds.