SECY - SULSO - GREMLIN Contacts

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SECY - Protein translocase subunit SecY

UniProt:	Q9UX84	Sequences: MSFIDSLATLGQYLPAVTKPKEKPSLGQKLVWSLVAVIIYLIMASTPLYGITSASFFKNLILEQIIFASTTGTLAQLGIGPIITAGLIMQILAGSKLISIDLNDPDDRVKFTEAQKGLAFIFILVESALFGYVLARTSTTINASILFIAGIVIAQLIVATYLILLLDELIQKGWGLGSGVSLFILAGVMKIMFWDMFGIASVSSQNLPIGFFPALFTALASHSDVLNLIVNTSTKNLFQPDLVGLVTTIALIIITIYLTTMTIEIPVTSQKLRGIRRTIPLNFLYVSSIPVIFVAVLGSDIQLFASLASYVSPSASNILNTVSGVFFFPPPNSAIPHSIYAVVLDPLGALEYAVVFIVLSILFGILWVDVAGLDPATQAQQLVEAGIEIPGVRNNPKIIEGILARYIYPLAFFSSIIVGLIAVFATLLGAYGTGIGILLAVTIAIQYYSLLAYERSLEMYPLLKRLIGE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	469 (392)
Sequences:	3181 (1671)
Seq/√Len:	84.4

ECOLI - SECY
BACSU - SECY
HALSA - SECY
SULSO - SECY

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
43_M	75_A	5.410	1.00
396_P	401_G	5.167	1.00
357_I	419_G	5.149	1.00
36_A	166_L	5.093	1.00
89_M	111_F	4.277	1.00
379_A	400_E	4.085	1.00
31_V	35_V	3.846	1.00
365_I	412_F	3.743	1.00
135_A	149_A	3.515	1.00
32_W	36_A	3.465	1.00
146_L	150_G	3.447	1.00
404_A	408_Y	3.374	1.00
97_L	111_F	3.285	1.00
100_I	114_A	2.942	1.00
105_P	108_R	2.895	1.00
64_Q	70_T	2.870	1.00
325_V	329_P	2.835	1.00
326_F	329_P	2.792	1.00
321_T	325_V	2.780	1.00
39_I	162_L	2.714	1.00
322_V	325_V	2.699	1.00
162_L	166_L	2.686	1.00
361_I	419_G	2.682	1.00
120_F	161_Y	2.640	1.00
127_S	157_I	2.629	1.00
89_M	118_L	2.563	1.00
267_V	279_I	2.561	1.00
96_K	99_S	2.560	1.00
124_L	157_I	2.518	1.00
380_Q	384_E	2.503	1.00
269_S	387_I	2.501	1.00
324_G	328_F	2.476	1.00
357_I	361_I	2.436	1.00
281_L	407_I	2.351	1.00
24_P	28_Q	2.339	1.00
46_T	74_L	2.311	1.00
89_M	97_L	2.266	1.00
377_T	381_Q	2.231	1.00
291_V	422_A	2.227	1.00
147_F	151_I	2.171	1.00
37_V	182_L	2.163	1.00
261_M	283_F	2.126	1.00
37_V	186_A	2.125	1.00
161_Y	164_L	2.120	1.00
33_S	182_L	2.054	1.00
48_L	152_V	2.018	1.00
110_K	113_E	1.998	1.00
98_I	102_L	1.993	1.00
30_L	34_L	1.989	1.00
40_Y	187_G	1.982	1.00
254_I	420_L	1.963	1.00
364_G	418_V	1.926	1.00
265_I	389_I	1.919	1.00
39_I	166_L	1.887	1.00
358_V	362_L	1.843	1.00
380_Q	383_V	1.833	1.00
405_R	409_P	1.831	1.00
116_K	168_E	1.823	1.00
351_E	354_V	1.782	1.00
124_L	153_I	1.759	1.00
265_I	406_Y	1.705	1.00
416_I	420_L	1.678	1.00
297_L	359_L	1.672	1.00
242_L	246_V	1.668	1.00
364_G	415_S	1.667	1.00
376_A	400_E	1.664	1.00
259_T	282_N	1.640	1.00
350_L	354_V	1.637	1.00
124_L	127_S	1.633	1.00
198_G	201_S	1.619	1.00
259_T	417_I	1.615	1.00
395_N	399_I	1.575	1.00
29_K	454_E	1.564	1.00
96_K	100_I	1.561	1.00
203_S	241_D	1.548	1.00
121_I	125_V	1.547	1.00
285_Y	407_I	1.538	1.00
146_L	149_A	1.537	1.00
373_L	378_Q	1.529	1.00
260_T	445_I	1.512	0.99
247_T	251_L	1.507	0.99
93_A	101_D	1.498	0.99
324_G	327_F	1.471	0.99
323_S	326_F	1.469	0.99
328_F	351_E	1.463	0.99
99_S	103_N	1.443	0.99
365_I	408_Y	1.440	0.99
122_F	463_L	1.432	0.99
302_Q	305_A	1.429	0.99
35_V	38_I	1.424	0.99
36_A	162_L	1.411	0.99
323_S	327_F	1.408	0.99
139_T	142_N	1.404	0.99
25_S	28_Q	1.401	0.99
57_F	61_I	1.401	0.99
123_I	157_I	1.394	0.99
375_P	404_A	1.390	0.99
164_L	180_V	1.359	0.99
123_I	160_T	1.358	0.99
140_T	143_A	1.337	0.99
103_N	106_D	1.331	0.99
38_I	42_I	1.329	0.99
89_M	114_A	1.326	0.99
119_A	164_L	1.325	0.99
322_V	326_F	1.325	0.99
196_M	200_A	1.323	0.99
417_I	438_L	1.319	0.99
160_T	163_I	1.318	0.99
116_K	164_L	1.305	0.98
176_L	451_L	1.286	0.98
33_S	175_G	1.281	0.98
308_A	311_V	1.279	0.98
322_V	329_P	1.267	0.98
300_D	304_F	1.265	0.98
148_I	152_V	1.259	0.98
119_A	160_T	1.258	0.98
361_I	416_I	1.258	0.98
93_A	111_F	1.251	0.98
378_Q	403_L	1.250	0.98
79_I	180_V	1.249	0.98
32_W	174_W	1.233	0.98
403_L	407_I	1.232	0.98
353_A	423_V	1.225	0.98
149_A	153_I	1.222	0.98
40_Y	44_A	1.221	0.98
131_G	152_V	1.220	0.98
128_A	153_I	1.217	0.98
373_L	403_L	1.215	0.98
141_I	144_S	1.213	0.98
144_S	148_I	1.209	0.98
257_Y	261_M	1.202	0.97
303_L	307_L	1.196	0.97
361_I	415_S	1.190	0.97
350_L	353_A	1.188	0.97
48_L	131_G	1.179	0.97
288_S	433_T	1.176	0.97
265_I	403_L	1.173	0.97
302_Q	306_S	1.170	0.97
279_I	459_M	1.164	0.97
258_L	261_M	1.156	0.97
18_T	22_E	1.155	0.97
251_L	255_T	1.153	0.97
80_G	84_T	1.150	0.97
374_D	377_T	1.148	0.97
436_G	440_A	1.144	0.97
75_A	163_I	1.135	0.96
185_L	444_A	1.129	0.96
324_G	330_P	1.129	0.96
447_Y	451_L	1.129	0.96
369_D	404_A	1.124	0.96
191_I	194_W	1.122	0.96
264_E	278_T	1.109	0.96
29_K	283_F	1.106	0.96
254_I	258_L	1.104	0.96
40_Y	166_L	1.104	0.96
181_S	443_I	1.100	0.96
20_P	30_L	1.092	0.95
351_E	355_V	1.091	0.95
127_S	153_I	1.087	0.95
260_T	449_S	1.073	0.95
394_N	399_I	1.071	0.95
289_I	370_V	1.070	0.95
85_A	118_L	1.064	0.95
201_S	221_S	1.063	0.95
19_K	459_M	1.060	0.95
28_Q	31_V	1.055	0.95
64_Q	191_I	1.055	0.95
145_I	148_I	1.051	0.94
148_I	151_I	1.042	0.94
258_L	417_I	1.038	0.94
354_V	358_V	1.023	0.94
305_A	308_A	1.018	0.93
16_A	95_S	1.013	0.93
27_G	31_V	1.010	0.93
124_L	150_G	0.997	0.93
29_K	40_Y	0.994	0.93
291_V	434_G	0.994	0.93
256_I	417_I	0.983	0.92
331_P	350_L	0.980	0.92
446_Q	450_L	0.975	0.92
104_D	107_D	0.974	0.92
132_Y	135_A	0.971	0.92
295_A	356_F	0.963	0.91
141_I	421_I	0.963	0.91
321_T	324_G	0.963	0.91
17_V	21_K	0.961	0.91
176_L	447_Y	0.958	0.91
163_I	183_F	0.954	0.91
427_L	431_Y	0.954	0.91
64_Q	67_F	0.952	0.91
322_V	331_P	0.950	0.91
80_G	368_V	0.943	0.90
288_S	435_I	0.939	0.90
118_L	180_V	0.939	0.90
48_L	72_G	0.939	0.90
452_A	458_E	0.934	0.90
143_A	146_L	0.919	0.89
251_L	424_F	0.917	0.89
238_F	242_L	0.916	0.89
258_L	279_I	0.916	0.89
308_A	312_S	0.912	0.89
150_G	154_A	0.912	0.89
298_G	423_V	0.909	0.89
195_D	199_I	0.905	0.89
245_L	249_I	0.898	0.88
192_M	437_I	0.896	0.88
194_W	198_G	0.895	0.88
272_L	275_I	0.893	0.88
188_V	288_S	0.889	0.88
396_P	400_E	0.881	0.87
183_F	303_L	0.878	0.87
113_E	117_G	0.877	0.87
97_L	114_A	0.872	0.87
168_E	271_K	0.871	0.87
77_L	160_T	0.869	0.86
419_G	423_V	0.867	0.86
77_L	84_T	0.865	0.86
192_M	196_M	0.865	0.86
309_S	312_S	0.862	0.86
19_K	23_K	0.861	0.86
96_K	163_I	0.859	0.86
239_Q	431_Y	0.857	0.86
291_V	418_V	0.856	0.86
72_G	156_L	0.855	0.86
105_P	109_V	0.853	0.85
356_F	423_V	0.852	0.85
132_Y	149_A	0.850	0.85
376_A	396_P	0.848	0.85
352_Y	369_D	0.848	0.85
23_K	455_R	0.846	0.85
40_Y	73_T	0.843	0.85
281_L	410_L	0.842	0.85
239_Q	243_V	0.841	0.85
305_A	325_V	0.836	0.84
415_S	419_G	0.835	0.84
299_S	303_L	0.835	0.84
24_P	458_E	0.834	0.84
397_K	401_G	0.833	0.84
114_A	118_L	0.832	0.84
196_M	199_I	0.829	0.84
183_F	324_G	0.824	0.83
446_Q	449_S	0.822	0.83
135_A	146_L	0.821	0.83
382_L	387_I	0.819	0.83
97_L	100_I	0.817	0.83
50_G	148_I	0.816	0.83
383_V	386_G	0.816	0.83
186_A	250_A	0.816	0.83
263_I	301_I	0.813	0.83
186_A	189_M	0.813	0.83
131_G	149_A	0.811	0.82
279_I	403_L	0.809	0.82
324_G	329_P	0.809	0.82
153_I	157_I	0.808	0.82
249_I	253_I	0.806	0.82
94_G	370_V	0.806	0.82
40_Y	183_F	0.805	0.82
268_T	453_Y	0.803	0.82
83_I	439_L	0.801	0.82
352_Y	357_I	0.798	0.81
388_E	394_N	0.796	0.81
447_Y	450_L	0.794	0.81
273_R	387_I	0.792	0.81
246_V	250_A	0.790	0.81
327_F	330_P	0.788	0.81
137_T	140_T	0.787	0.81
375_P	379_A	0.785	0.80
122_F	296_V	0.784	0.80
167_D	180_V	0.781	0.80
184_I	292_I	0.781	0.80
187_G	190_K	0.781	0.80
44_A	73_T	0.781	0.80
357_I	423_V	0.779	0.80
112_T	168_E	0.778	0.80
244_G	432_G	0.777	0.80
128_A	156_L	0.777	0.80
86_G	435_I	0.774	0.79
32_W	169_L	0.774	0.79
258_L	413_F	0.771	0.79
355_V	362_L	0.770	0.79
322_V	330_P	0.770	0.79
45_S	64_Q	0.769	0.79
392_V	402_I	0.768	0.79
79_I	161_Y	0.761	0.78
136_R	144_S	0.760	0.78
240_P	244_G	0.760	0.78
297_L	362_L	0.759	0.78
381_Q	385_A	0.758	0.78
186_A	370_V	0.758	0.78
355_V	359_L	0.757	0.78
40_Y	186_A	0.757	0.78
61_I	64_Q	0.754	0.78
288_S	292_I	0.749	0.77
157_I	407_I	0.748	0.77
197_F	201_S	0.747	0.77
288_S	434_G	0.746	0.77
357_I	416_I	0.745	0.77
286_V	368_V	0.740	0.76
25_S	454_E	0.739	0.76
79_I	262_T	0.736	0.76
137_T	141_I	0.732	0.76
40_Y	99_S	0.728	0.75
33_S	36_A	0.727	0.75
182_L	447_Y	0.724	0.75
442_T	446_Q	0.724	0.75
79_I	163_I	0.722	0.75
58_K	64_Q	0.722	0.75
265_I	390_P	0.720	0.74
29_K	306_S	0.720	0.74
139_T	143_A	0.720	0.74
298_G	302_Q	0.719	0.74
94_G	267_V	0.717	0.74
74_L	432_G	0.717	0.74
88_I	122_F	0.717	0.74
137_T	142_N	0.715	0.74
77_L	378_Q	0.715	0.74
378_Q	417_I	0.715	0.74
20_P	23_K	0.712	0.74
16_A	20_P	0.711	0.73
78_G	118_L	0.711	0.73
244_G	248_T	0.711	0.73
185_L	189_M	0.710	0.73
111_F	297_L	0.707	0.73
455_R	458_E	0.705	0.73
98_I	101_D	0.704	0.73
145_I	249_I	0.703	0.73
353_A	426_T	0.702	0.72
263_I	406_Y	0.701	0.72
452_A	462_L	0.697	0.72
202_V	221_S	0.697	0.72
267_V	382_L	0.697	0.72
271_K	278_T	0.695	0.72
356_F	433_T	0.694	0.72
258_L	421_I	0.694	0.72
86_G	292_I	0.692	0.71
109_V	271_K	0.691	0.71
356_F	422_A	0.690	0.71
258_L	283_F	0.688	0.71
311_V	380_Q	0.687	0.71
20_P	26_L	0.686	0.71
26_L	128_A	0.684	0.71
428_L	432_G	0.681	0.70
26_L	176_L	0.681	0.70
16_A	19_K	0.680	0.70
92_L	95_S	0.678	0.70
298_G	355_V	0.678	0.70
417_I	444_A	0.678	0.70
408_Y	412_F	0.677	0.70
412_F	427_L	0.675	0.70
76_Q	111_F	0.675	0.70
101_D	259_T	0.673	0.69
371_A	461_P	0.673	0.69
20_P	451_L	0.672	0.69
250_A	253_I	0.670	0.69
101_D	377_T	0.670	0.69
84_T	291_V	0.668	0.69
51_I	54_A	0.667	0.69
294_V	356_F	0.666	0.68
305_A	464_K	0.666	0.68
130_F	133_V	0.663	0.68
48_L	78_G	0.660	0.68
360_S	416_I	0.659	0.68
263_I	390_P	0.658	0.68
452_A	463_L	0.658	0.68
176_L	182_L	0.656	0.67
72_G	289_I	0.656	0.67
38_I	325_V	0.654	0.67
388_E	453_Y	0.653	0.67
116_K	288_S	0.652	0.67
63_E	403_L	0.652	0.67
138_S	141_I	0.649	0.66
403_L	410_L	0.649	0.66
51_I	134_L	0.648	0.66
23_K	452_A	0.647	0.66
33_S	176_L	0.646	0.66
291_V	295_A	0.646	0.66
101_D	108_R	0.644	0.66
246_V	252_I	0.644	0.66
114_A	286_V	0.643	0.66
265_I	392_V	0.643	0.66
375_P	403_L	0.641	0.66
28_Q	35_V	0.641	0.66
192_M	195_D	0.640	0.65
267_V	387_I	0.637	0.65
189_M	192_M	0.636	0.65
243_V	246_V	0.634	0.65
141_I	148_I	0.634	0.65
326_F	330_P	0.633	0.65
241_D	245_L	0.630	0.64
32_W	282_N	0.630	0.64
307_L	351_E	0.630	0.64
312_S	324_G	0.630	0.64
47_P	192_M	0.629	0.64
239_Q	309_S	0.628	0.64
357_I	427_L	0.628	0.64
73_T	367_W	0.628	0.64
376_A	380_Q	0.626	0.64
199_I	202_V	0.624	0.63
375_P	407_I	0.624	0.63
23_K	457_L	0.623	0.63
95_S	114_A	0.622	0.63
84_T	404_A	0.622	0.63
73_T	191_I	0.620	0.63
56_F	249_I	0.620	0.63
161_Y	454_E	0.619	0.63
35_V	39_I	0.619	0.63
197_F	200_A	0.619	0.63
41_L	190_K	0.618	0.63
383_V	406_Y	0.618	0.63
182_L	186_A	0.616	0.62
285_Y	411_A	0.615	0.62
182_L	421_I	0.614	0.62
296_V	299_S	0.614	0.62
410_L	415_S	0.614	0.62
85_A	260_T	0.612	0.62
288_S	293_F	0.610	0.62
112_T	429_G	0.609	0.62
183_F	234_T	0.608	0.61
23_K	27_G	0.608	0.61
93_A	97_L	0.607	0.61
243_V	247_T	0.607	0.61
36_A	170_I	0.607	0.61
74_L	162_L	0.606	0.61
253_I	257_Y	0.604	0.61
32_W	284_L	0.603	0.61
181_S	439_L	0.603	0.61
74_L	368_V	0.603	0.61
358_V	431_Y	0.602	0.61
40_Y	46_T	0.602	0.61
459_M	464_K	0.602	0.61
44_A	456_S	0.601	0.61
96_K	265_I	0.598	0.60
90_Q	183_F	0.596	0.60
293_F	363_F	0.596	0.60
46_T	420_L	0.595	0.60
366_L	370_V	0.595	0.60
99_S	196_M	0.594	0.60
259_T	291_V	0.594	0.60
268_T	388_E	0.592	0.59
79_I	164_L	0.592	0.59
50_G	156_L	0.591	0.59
65_I	253_I	0.590	0.59
329_P	355_V	0.590	0.59
89_M	289_I	0.590	0.59
133_V	137_T	0.589	0.59
311_V	324_G	0.589	0.59
439_L	443_I	0.589	0.59
16_A	21_K	0.588	0.59
292_I	446_Q	0.588	0.59
135_A	145_I	0.587	0.59
191_I	424_F	0.586	0.59
157_I	161_Y	0.585	0.59
265_I	279_I	0.584	0.58
123_I	351_E	0.583	0.58
19_K	458_E	0.582	0.58
18_T	378_Q	0.582	0.58
40_Y	78_G	0.581	0.58
84_T	88_I	0.580	0.58
34_L	379_A	0.580	0.58
185_L	367_W	0.579	0.58
95_S	98_I	0.577	0.57
92_L	97_L	0.575	0.57
83_I	288_S	0.574	0.57
420_L	424_F	0.574	0.57
286_V	464_K	0.573	0.57
279_I	359_L	0.572	0.57
65_I	84_T	0.572	0.57
124_L	128_A	0.572	0.57
196_M	327_F	0.571	0.57
23_K	26_L	0.571	0.57
118_L	289_I	0.570	0.57
321_T	329_P	0.570	0.57
95_S	352_Y	0.569	0.56
44_A	71_T	0.568	0.56
42_I	46_T	0.568	0.56
74_L	105_P	0.567	0.56
64_Q	73_T	0.567	0.56
287_S	438_L	0.566	0.56
283_F	286_V	0.565	0.56
454_E	457_L	0.564	0.56
248_T	252_I	0.564	0.56
191_I	300_D	0.563	0.56
119_A	251_L	0.562	0.56
163_I	286_V	0.562	0.56
64_Q	69_S	0.562	0.56
370_V	387_I	0.561	0.55
79_I	86_G	0.560	0.55
86_G	163_I	0.560	0.55
266_P	270_Q	0.560	0.55
282_N	287_S	0.557	0.55
348_G	426_T	0.557	0.55
24_P	154_A	0.557	0.55
44_A	374_D	0.557	0.55
311_V	321_T	0.556	0.55
331_P	348_G	0.556	0.55
74_L	424_F	0.555	0.55
308_A	322_V	0.554	0.54
282_N	371_A	0.553	0.54
76_Q	383_V	0.552	0.54
150_G	153_I	0.551	0.54
53_S	142_N	0.551	0.54
168_E	436_G	0.551	0.54
121_I	308_A	0.550	0.54
402_I	406_Y	0.550	0.54
378_Q	460_Y	0.549	0.54
126_E	409_P	0.549	0.54
255_T	265_I	0.545	0.53
371_A	403_L	0.544	0.53
259_T	262_T	0.544	0.53
36_A	163_I	0.544	0.53
270_Q	273_R	0.544	0.53
359_L	362_L	0.543	0.53
71_T	267_V	0.543	0.53
285_Y	373_L	0.542	0.53
76_Q	241_D	0.542	0.53
267_V	275_I	0.541	0.53
248_T	428_L	0.541	0.53
426_T	429_G	0.541	0.53
24_P	27_G	0.540	0.53
234_T	304_F	0.540	0.53
295_A	298_G	0.538	0.52
250_A	361_I	0.538	0.52
151_I	361_I	0.535	0.52
191_I	195_D	0.534	0.52
303_L	378_Q	0.534	0.52
123_I	161_Y	0.534	0.52
438_L	441_V	0.534	0.52
328_F	355_V	0.534	0.52
54_A	324_G	0.534	0.52
445_I	449_S	0.533	0.52
75_A	162_L	0.531	0.51
240_P	432_G	0.529	0.51
73_T	352_Y	0.528	0.51
380_Q	429_G	0.528	0.51
83_I	292_I	0.528	0.51
96_K	114_A	0.527	0.51
22_E	275_I	0.526	0.51
136_R	355_V	0.526	0.51
110_K	389_I	0.525	0.51
422_A	442_T	0.524	0.50
151_I	154_A	0.524	0.50
74_L	243_V	0.524	0.50
248_T	251_L	0.523	0.50
120_F	421_I	0.521	0.50
170_I	292_I	0.521	0.50
45_S	73_T	0.521	0.50
74_L	142_N	0.519	0.50
44_A	264_E	0.518	0.50
56_F	127_S	0.518	0.50
348_G	353_A	0.517	0.50
132_Y	415_S	0.517	0.50
85_A	103_N	0.517	0.50
141_I	152_V	0.516	0.49
55_S	201_S	0.516	0.49
255_T	436_G	0.516	0.49
61_I	160_T	0.516	0.49
98_I	374_D	0.515	0.49
112_T	405_R	0.514	0.49
306_S	328_F	0.514	0.49
307_L	382_L	0.513	0.49
142_N	419_G	0.513	0.49
48_L	99_S	0.513	0.49
122_F	137_T	0.512	0.49
60_L	415_S	0.511	0.49
52_T	59_N	0.511	0.49
191_I	272_L	0.511	0.49
82_I	293_F	0.510	0.49
292_I	434_G	0.510	0.49
169_L	385_A	0.510	0.49
200_A	354_V	0.509	0.48
348_G	352_Y	0.508	0.48
367_W	387_I	0.507	0.48
184_I	187_G	0.507	0.48
166_L	183_F	0.506	0.48
246_V	249_I	0.506	0.48
70_T	389_I	0.506	0.48
34_L	194_W	0.506	0.48
73_T	120_F	0.505	0.48
116_K	119_A	0.505	0.48
56_F	197_F	0.504	0.48
27_G	43_M	0.504	0.48
100_I	104_D	0.504	0.48
73_T	360_S	0.503	0.48
194_W	420_L	0.503	0.48
55_S	62_L	0.502	0.48
79_I	98_I	0.501	0.47
242_L	376_A	0.501	0.47
118_L	121_I	0.500	0.47

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3mp7A	1	0.791	100	0.11	Contact Map
2ww9A	1	0.9744	100	0.121	Contact Map
1rh5A	1	0.8614	100	0.129	Contact Map
4w251	1	0.8316	100	0.183	Contact Map
3dinC	1	0.8017	100	0.202	Contact Map
2zjsY	2	0.8316	100	0.205	Contact Map
3dl8G	1	0.8166	100	0.207	Contact Map
3j01A	1	0.8571	100	0.212	Contact Map
4j72A	2	0.2026	15.6	0.977	Contact Map
2m5zA	1	0.0618	6.8	0.98	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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