ARLY - SULSO - GREMLIN Contacts

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ARLY - Argininosuccinate lyase

UniProt:	Q9UX32	Sequences: MLYRKWGSEKDEVVNYTSSVDSDREIIEEVKLTMKAHVISLYLTGYLGKETARKILVALNEFKEIGQGYEDIHEALEDFLIKKVGEDAGWIGLGRSRNDHVATALRLRLRNKLIELLTDINSLRKILLDKAKEHITTIFPSYTHLQLAQPTTFAHYLTYIEEELASRWEIIFSTLKQVNKSPLGSGAIVGTNVKIDREKEAELLGFDSIIYNTLSATSSRADILSTISELTVLMVVLSRIAEDLIFFSSNKLIKLPDSHVSTSSLMPQKRNPVTMEILRAKAAESIGMLTSLLSIYKGLPTGYNLDLQEMNKYYWLVINYTKSSIGVLSSLFSQIQVNKINIDESSLATDDAELLSISKKVPYRSTYFEIAKKVREGSYKSTLKIEDSINMKAVIGSPNFDLMANLIKIRETKLKEDEKEIEEYKLKIISKLGELQVIENEIGE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	444 (390)
Sequences:	10986 (5715)
Seq/√Len:	289.4

ECOLI - ARLY ASPA FUMC PUR8
BACSU - ARLY PUR8 ASPA FUMC
HALSA - ARLY Q9HS42 FUMC
SULSO - ARLY Q980P8 FUMC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
42_Y	52_A	3.949	1.00
51_T	90_W	3.497	1.00
43_L	199_K	3.349	1.00
35_K	60_N	3.305	1.00
341_N	344_E	3.195	1.00
114_I	175_L	3.148	1.00
39_I	56_L	3.103	1.00
39_I	203_L	2.927	1.00
288_M	317_V	2.923	1.00
29_E	111_N	2.852	1.00
121_N	168_W	2.827	1.00
79_F	83_K	2.824	1.00
234_M	285_S	2.803	1.00
124_R	165_A	2.739	1.00
126_I	329_S	2.643	1.00
126_I	333_S	2.642	1.00
113_L	226_T	2.630	1.00
117_L	172_F	2.624	1.00
25_E	319_N	2.578	1.00
281_K	324_S	2.532	1.00
153_F	337_V	2.522	1.00
177_Q	225_S	2.463	1.00
119_D	326_G	2.404	1.00
199_K	202_E	2.399	1.00
117_L	168_W	2.368	1.00
130_K	133_E	2.333	1.00
231_T	289_L	2.318	1.00
42_Y	49_K	2.310	1.00
110_R	179_N	2.285	1.00
122_S	329_S	2.255	1.00
48_G	51_T	2.245	1.00
179_N	207_D	2.167	1.00
136_T	339_K	2.162	1.00
372_K	376_E	2.157	1.00
329_S	333_S	2.100	1.00
121_N	172_F	2.070	1.00
284_E	313_Y	2.031	1.00
61_E	83_K	2.019	1.00
129_D	333_S	1.988	1.00
124_R	168_W	1.963	1.00
341_N	345_S	1.955	1.00
49_K	53_R	1.944	1.00
256_P	336_Q	1.922	1.00
129_D	133_E	1.906	1.00
235_V	286_I	1.897	1.00
199_K	203_L	1.889	1.00
391_M	394_V	1.876	1.00
241_A	278_L	1.875	1.00
173_S	177_Q	1.874	1.00
198_E	202_E	1.870	1.00
119_D	322_K	1.870	1.00
168_W	172_F	1.865	1.00
170_I	225_S	1.850	1.00
126_I	332_F	1.831	1.00
32_L	111_N	1.815	1.00
128_L	165_A	1.791	1.00
120_I	233_L	1.788	1.00
35_K	56_L	1.734	1.00
173_S	176_K	1.718	1.00
210_I	216_A	1.711	1.00
134_H	137_T	1.710	1.00
237_L	278_L	1.697	1.00
365_S	368_F	1.693	1.00
181_S	201_A	1.686	1.00
124_R	161_E	1.670	1.00
167_R	236_V	1.663	1.00
339_K	343_D	1.654	1.00
166_S	215_S	1.649	1.00
53_R	57_V	1.639	1.00
39_I	199_K	1.612	1.00
180_K	208_S	1.600	1.00
376_E	380_K	1.575	1.00
224_L	296_Y	1.552	1.00
52_A	56_L	1.543	1.00
119_D	329_S	1.541	1.00
54_K	84_V	1.537	1.00
79_F	82_K	1.532	1.00
81_I	88_A	1.520	1.00
241_A	328_L	1.518	1.00
226_T	318_I	1.514	1.00
278_L	328_L	1.511	1.00
231_T	293_L	1.493	1.00
131_A	161_E	1.490	1.00
361_V	369_E	1.486	1.00
166_S	221_A	1.477	1.00
109_L	314_Y	1.472	1.00
284_E	316_L	1.464	1.00
130_K	134_H	1.455	1.00
40_S	199_K	1.450	1.00
61_E	79_F	1.440	1.00
35_K	63_K	1.433	1.00
291_S	309_E	1.424	1.00
384_K	387_D	1.423	1.00
185_S	216_A	1.402	1.00
112_K	322_K	1.401	1.00
220_R	307_L	1.396	1.00
176_K	207_D	1.386	1.00
174_T	229_E	1.380	1.00
275_M	331_L	1.376	1.00
28_E	32_L	1.363	1.00
60_N	64_E	1.356	1.00
338_N	341_N	1.343	1.00
124_R	164_L	1.327	1.00
128_L	132_K	1.323	1.00
246_F	300_P	1.318	1.00
25_E	112_K	1.308	1.00
240_I	328_L	1.304	1.00
157_L	160_I	1.301	1.00
35_K	39_I	1.301	1.00
123_L	329_S	1.301	1.00
365_S	389_I	1.299	1.00
169_E	177_Q	1.294	1.00
122_S	333_S	1.285	1.00
340_I	344_E	1.285	1.00
228_S	232_V	1.285	1.00
30_V	100_H	1.278	1.00
224_L	232_V	1.276	1.00
117_L	175_L	1.272	1.00
31_K	62_F	1.253	1.00
115_E	322_K	1.251	1.00
153_F	157_L	1.245	1.00
383_L	387_D	1.244	1.00
109_L	226_T	1.239	1.00
227_I	292_L	1.238	1.00
378_S	386_E	1.234	1.00
160_I	302_G	1.228	1.00
46_Y	93_L	1.225	1.00
72_I	76_L	1.218	1.00
287_G	291_S	1.213	1.00
120_I	164_L	1.212	1.00
38_V	47_L	1.199	1.00
126_I	129_D	1.198	1.00
94_G	196_D	1.197	1.00
290_T	294_S	1.197	1.00
137_T	339_K	1.191	1.00
278_L	324_S	1.189	1.00
399_N	402_L	1.181	1.00
132_K	135_I	1.178	1.00
81_I	86_E	1.174	1.00
31_K	63_K	1.170	1.00
31_K	72_I	1.169	1.00
233_L	325_I	1.165	1.00
227_I	314_Y	1.164	1.00
61_E	82_K	1.158	1.00
234_M	321_T	1.156	1.00
372_K	387_D	1.153	1.00
361_V	366_T	1.148	1.00
20_V	316_L	1.147	1.00
134_H	339_K	1.144	1.00
344_E	347_L	1.143	1.00
286_I	294_S	1.137	1.00
254_K	338_N	1.136	1.00
153_F	342_I	1.134	1.00
128_L	161_E	1.129	1.00
227_I	317_V	1.128	1.00
147_L	251_K	1.127	1.00
127_L	240_I	1.124	1.00
110_R	206_F	1.118	1.00
233_L	321_T	1.118	1.00
119_D	122_S	1.116	1.00
123_L	164_L	1.115	1.00
292_L	314_Y	1.113	1.00
201_A	207_D	1.107	1.00
223_I	314_Y	1.101	1.00
36_A	203_L	1.100	1.00
244_L	275_M	1.097	1.00
116_L	321_T	1.091	1.00
139_F	342_I	1.088	1.00
171_I	233_L	1.086	1.00
160_I	240_I	1.086	1.00
122_S	326_G	1.083	1.00
117_L	121_N	1.083	1.00
135_I	154_A	1.083	1.00
123_L	332_F	1.083	1.00
33_T	100_H	1.082	1.00
285_S	321_T	1.080	1.00
229_E	233_L	1.076	1.00
105_L	311_N	1.074	1.00
56_L	60_N	1.073	1.00
282_A	286_I	1.071	1.00
158_T	212_N	1.069	1.00
147_L	250_N	1.066	1.00
94_G	195_I	1.065	1.00
29_E	107_L	1.053	1.00
54_K	57_V	1.048	1.00
284_E	312_K	1.046	1.00
238_S	279_R	1.045	1.00
112_K	115_E	1.045	1.00
43_L	203_L	1.044	1.00
28_E	63_K	1.038	1.00
65_I	68_G	1.037	1.00
400_F	404_A	1.029	1.00
136_T	154_A	1.025	1.00
130_K	332_F	1.024	1.00
130_K	157_L	1.023	1.00
387_D	390_N	1.022	1.00
135_I	152_T	1.021	1.00
121_N	125_K	1.019	1.00
105_L	223_I	1.019	1.00
385_I	389_I	1.019	1.00
226_T	314_Y	1.014	1.00
58_A	61_E	1.009	1.00
49_K	52_A	1.008	1.00
169_E	176_K	1.006	1.00
256_P	338_N	1.003	1.00
28_E	111_N	1.002	1.00
113_L	175_L	1.000	1.00
69_Y	75_A	0.997	1.00
110_R	175_L	0.994	1.00
60_N	63_K	0.991	1.00
24_R	28_E	0.990	1.00
291_S	313_Y	0.989	1.00
162_E	166_S	0.989	1.00
392_K	396_G	0.988	1.00
254_K	336_Q	0.986	1.00
259_H	330_S	0.985	1.00
42_Y	53_R	0.982	1.00
113_L	171_I	0.980	1.00
137_T	342_I	0.975	1.00
57_V	83_K	0.973	1.00
105_L	314_Y	0.971	1.00
228_S	289_L	0.967	1.00
32_L	203_L	0.966	1.00
284_E	320_Y	0.960	1.00
110_R	114_I	0.958	1.00
53_R	56_L	0.956	1.00
46_Y	196_D	0.955	1.00
69_Y	78_D	0.950	1.00
173_S	225_S	0.949	1.00
120_I	168_W	0.947	1.00
359_K	402_L	0.946	1.00
169_E	173_S	0.945	1.00
197_R	201_A	0.944	1.00
33_T	103_T	0.939	1.00
385_I	392_K	0.937	1.00
54_K	58_A	0.937	1.00
235_V	296_Y	0.934	1.00
144_H	276_E	0.932	1.00
124_R	128_L	0.930	1.00
142_Y	251_K	0.928	1.00
50_E	53_R	0.927	1.00
288_M	316_L	0.922	1.00
151_T	188_I	0.920	1.00
112_K	318_I	0.919	1.00
373_K	391_M	0.918	1.00
175_L	179_N	0.917	1.00
237_L	328_L	0.914	1.00
227_I	289_L	0.912	1.00
30_V	33_T	0.910	1.00
179_N	206_F	0.910	1.00
142_Y	147_L	0.910	1.00
237_L	325_I	0.910	1.00
312_K	316_L	0.910	1.00
244_L	335_I	0.908	1.00
255_L	335_I	0.908	1.00
141_S	151_T	0.907	1.00
186_G	265_L	0.906	1.00
127_L	157_L	0.902	1.00
44_T	196_D	0.900	1.00
48_G	90_W	0.898	1.00
289_L	293_L	0.898	1.00
43_L	49_K	0.893	1.00
230_L	321_T	0.893	1.00
372_K	383_L	0.889	1.00
40_S	44_T	0.887	1.00
127_L	332_F	0.883	1.00
151_T	214_L	0.880	1.00
30_V	72_I	0.877	1.00
29_E	108_R	0.877	1.00
18_S	277_I	0.872	1.00
145_L	246_F	0.872	1.00
25_E	111_N	0.869	1.00
80_L	91_I	0.867	1.00
137_T	337_V	0.867	1.00
131_A	158_T	0.867	1.00
162_E	211_Y	0.864	1.00
155_H	213_T	0.856	1.00
161_E	165_A	0.846	1.00
59_L	62_F	0.841	1.00
255_L	334_Q	0.841	1.00
32_L	200_E	0.831	1.00
127_L	161_E	0.828	1.00
390_N	404_A	0.828	1.00
277_I	327_V	0.827	1.00
383_L	386_E	0.824	1.00
384_K	388_S	0.823	1.00
61_E	64_E	0.815	1.00
125_K	129_D	0.814	1.00
378_S	383_L	0.813	1.00
133_E	336_Q	0.811	1.00
50_E	54_K	0.810	1.00
219_S	236_V	0.810	1.00
37_H	95_R	0.809	1.00
283_A	291_S	0.809	1.00
218_S	302_G	0.808	1.00
181_S	200_E	0.808	1.00
103_T	181_S	0.806	0.99
145_L	249_S	0.805	0.99
238_S	297_K	0.804	0.99
126_I	130_K	0.803	0.99
17_T	327_V	0.800	0.99
360_K	398_P	0.799	0.99
13_V	274_T	0.796	0.99
156_Y	247_F	0.795	0.99
225_S	228_S	0.792	0.99
47_L	55_I	0.788	0.99
114_I	206_F	0.786	0.99
235_V	293_L	0.780	0.99
354_L	359_K	0.777	0.99
384_K	390_N	0.776	0.99
39_I	43_L	0.771	0.99
52_A	55_I	0.769	0.99
51_T	87_D	0.769	0.99
134_H	337_V	0.768	0.99
295_I	309_E	0.765	0.99
197_R	209_I	0.765	0.99
181_S	209_I	0.763	0.99
180_K	210_I	0.763	0.99
38_V	52_A	0.757	0.99
176_K	179_N	0.757	0.99
123_L	325_I	0.754	0.99
139_F	156_Y	0.752	0.99
85_G	88_A	0.752	0.99
42_Y	47_L	0.751	0.99
256_P	334_Q	0.750	0.99
284_E	288_M	0.746	0.99
164_L	325_I	0.742	0.99
226_T	230_L	0.740	0.99
221_A	236_V	0.738	0.99
51_T	55_I	0.736	0.99
385_I	395_I	0.736	0.99
325_I	329_S	0.735	0.99
17_T	305_L	0.733	0.99
392_K	395_I	0.730	0.99
286_I	290_T	0.729	0.99
54_K	87_D	0.728	0.99
47_L	93_L	0.726	0.99
384_K	389_I	0.726	0.99
142_Y	250_N	0.726	0.99
376_E	387_D	0.725	0.99
39_I	52_A	0.725	0.99
376_E	383_L	0.723	0.99
182_P	216_A	0.722	0.99
113_L	174_T	0.719	0.99
368_F	372_K	0.717	0.99
215_S	221_A	0.717	0.99
361_V	394_V	0.717	0.99
253_I	338_N	0.716	0.99
337_V	342_I	0.712	0.99
349_T	352_A	0.711	0.99
159_Y	239_R	0.707	0.99
43_L	196_D	0.706	0.99
120_I	325_I	0.706	0.99
376_E	379_Y	0.705	0.99
386_E	389_I	0.704	0.99
372_K	386_E	0.704	0.99
127_L	164_L	0.704	0.99
78_D	82_K	0.702	0.99
133_E	339_K	0.701	0.99
36_A	39_I	0.700	0.99
401_D	404_A	0.699	0.99
208_S	211_Y	0.697	0.99
286_I	293_L	0.696	0.99
376_E	391_M	0.696	0.99
209_I	213_T	0.695	0.99
166_S	180_K	0.694	0.98
70_E	257_D	0.692	0.98
241_A	275_M	0.692	0.98
35_K	52_A	0.691	0.98
340_I	343_D	0.691	0.98
13_V	17_T	0.690	0.98
163_E	219_S	0.690	0.98
58_A	84_V	0.689	0.98
372_K	375_R	0.689	0.98
169_E	180_K	0.688	0.98
170_I	221_A	0.688	0.98
214_L	302_G	0.687	0.98
32_L	63_K	0.687	0.98
163_E	236_V	0.687	0.98
38_V	55_I	0.683	0.98
361_V	365_S	0.682	0.98
200_E	203_L	0.682	0.98
116_L	318_I	0.679	0.98
137_T	152_T	0.679	0.98
164_L	167_R	0.679	0.98
179_N	201_A	0.676	0.98
290_T	293_L	0.676	0.98
134_H	153_F	0.675	0.98
26_I	101_V	0.673	0.98
57_V	61_E	0.672	0.98
331_L	335_I	0.671	0.98
44_T	199_K	0.670	0.98
223_I	292_L	0.666	0.98
242_E	279_R	0.666	0.98
106_R	222_D	0.665	0.98
394_V	398_P	0.665	0.98
62_F	76_L	0.664	0.98
375_R	379_Y	0.664	0.98
382_T	390_N	0.663	0.98
224_L	293_L	0.662	0.98
132_K	136_T	0.660	0.98
115_E	119_D	0.657	0.98
137_T	343_D	0.657	0.98
122_S	126_I	0.654	0.98
110_R	207_D	0.654	0.98
170_I	173_S	0.653	0.98
362_P	365_S	0.651	0.98
64_E	79_F	0.649	0.98
131_A	135_I	0.647	0.98
374_V	377_G	0.646	0.98
35_K	203_L	0.646	0.98
247_F	301_T	0.645	0.98
215_S	236_V	0.645	0.98
224_L	292_L	0.644	0.98
51_T	54_K	0.643	0.98
125_K	128_L	0.642	0.97
382_T	386_E	0.640	0.97
170_I	177_Q	0.640	0.97
46_Y	94_G	0.639	0.97
354_L	398_P	0.638	0.97
129_D	132_K	0.638	0.97
167_R	232_V	0.638	0.97
20_V	312_K	0.637	0.97
381_S	392_K	0.637	0.97
283_A	294_S	0.637	0.97
283_A	295_I	0.637	0.97
121_N	124_R	0.636	0.97
69_Y	74_E	0.636	0.97
108_R	315_W	0.631	0.97
181_S	185_S	0.630	0.97
108_R	318_I	0.627	0.97
121_N	165_A	0.627	0.97
114_I	172_F	0.626	0.97
22_S	312_K	0.625	0.97
21_D	112_K	0.625	0.97
327_V	330_S	0.622	0.97
130_K	335_I	0.621	0.97
116_L	230_L	0.618	0.97
281_K	320_Y	0.613	0.97
59_L	63_K	0.612	0.97
62_F	79_F	0.612	0.97
240_I	332_F	0.609	0.97
169_E	172_F	0.607	0.97
380_K	387_D	0.607	0.97
109_L	318_I	0.606	0.96
87_D	90_W	0.605	0.96
113_L	117_L	0.602	0.96
28_E	66_G	0.600	0.96
193_V	353_E	0.597	0.96
17_T	330_S	0.596	0.96
197_R	200_E	0.595	0.96
38_V	91_I	0.595	0.96
13_V	18_S	0.594	0.96
35_K	59_L	0.594	0.96
382_T	387_D	0.594	0.96
139_F	151_T	0.592	0.96
368_F	375_R	0.592	0.96
119_D	325_I	0.591	0.96
157_L	342_I	0.591	0.96
371_A	375_R	0.590	0.96
259_H	334_Q	0.590	0.96
167_R	170_I	0.590	0.96
16_Y	278_L	0.590	0.96
160_I	163_E	0.589	0.96
18_S	21_D	0.588	0.96
42_Y	56_L	0.587	0.96
285_S	317_V	0.587	0.96
287_G	290_T	0.586	0.96
59_L	76_L	0.586	0.96
224_L	228_S	0.585	0.96
381_S	396_G	0.585	0.96
231_T	235_V	0.585	0.96
244_L	328_L	0.584	0.96
16_Y	324_S	0.584	0.96
278_L	331_L	0.581	0.96
373_K	376_E	0.580	0.95
395_I	400_F	0.579	0.95
11_D	15_N	0.577	0.95
163_E	218_S	0.577	0.95
48_G	52_A	0.576	0.95
389_I	396_G	0.576	0.95
31_K	76_L	0.576	0.95
314_Y	318_I	0.575	0.95
156_Y	243_D	0.574	0.95
38_V	56_L	0.572	0.95
157_L	335_I	0.571	0.95
84_V	88_A	0.569	0.95
201_A	206_F	0.569	0.95
274_T	331_L	0.568	0.95
171_I	229_E	0.567	0.95
14_V	17_T	0.567	0.95
221_A	224_L	0.567	0.95
162_E	165_A	0.565	0.95
179_N	208_S	0.565	0.95
90_W	93_L	0.563	0.95
241_A	279_R	0.563	0.95
385_I	400_F	0.562	0.95
174_T	226_T	0.562	0.95
350_D	354_L	0.561	0.95
238_S	294_S	0.561	0.95
285_S	320_Y	0.561	0.95
86_E	89_G	0.560	0.95
279_R	306_D	0.560	0.95
395_I	399_N	0.560	0.95
183_L	200_E	0.559	0.95
32_L	36_A	0.557	0.94
380_K	384_K	0.557	0.94
221_A	225_S	0.557	0.94
162_E	212_N	0.557	0.94
151_T	155_H	0.556	0.94
313_Y	316_L	0.556	0.94
367_Y	371_A	0.555	0.94
33_T	104_A	0.552	0.94
114_I	179_N	0.551	0.94
225_S	232_V	0.548	0.94
384_K	391_M	0.548	0.94
144_H	305_L	0.546	0.94
364_R	368_F	0.545	0.94
387_D	391_M	0.545	0.94
165_A	169_E	0.545	0.94
140_P	350_D	0.545	0.94
260_V	273_V	0.545	0.94
156_Y	302_G	0.544	0.94
113_L	178_V	0.544	0.94
339_K	342_I	0.543	0.94
72_I	104_A	0.543	0.94
29_E	32_L	0.540	0.93
139_F	247_F	0.538	0.93
170_I	232_V	0.538	0.93
54_K	86_E	0.537	0.93
316_L	320_Y	0.536	0.93
164_L	233_L	0.536	0.93
123_L	126_I	0.536	0.93
176_K	180_K	0.535	0.93
164_L	237_L	0.535	0.93
18_S	327_V	0.535	0.93
294_S	298_G	0.534	0.93
228_S	231_T	0.534	0.93
140_P	345_S	0.532	0.93
11_D	14_V	0.532	0.93
84_V	87_D	0.531	0.93
25_E	115_E	0.531	0.93
118_T	122_S	0.531	0.93
20_V	25_E	0.530	0.93
55_I	80_L	0.530	0.93
246_F	249_S	0.529	0.93
174_T	178_V	0.527	0.93
174_T	225_S	0.525	0.92
147_L	346_S	0.525	0.92
166_S	225_S	0.524	0.92
58_A	83_K	0.524	0.92
137_T	154_A	0.523	0.92
128_L	131_A	0.522	0.92
393_A	396_G	0.522	0.92
31_K	59_L	0.520	0.92
384_K	392_K	0.518	0.92
283_A	297_K	0.518	0.92
176_K	208_S	0.517	0.92
15_N	19_S	0.517	0.92
109_L	178_V	0.517	0.92
224_L	235_V	0.516	0.92
278_L	282_A	0.516	0.92
32_L	204_L	0.515	0.92
117_L	229_E	0.515	0.92
37_H	200_E	0.515	0.92
246_F	301_T	0.513	0.92
180_K	222_D	0.513	0.92
296_Y	307_L	0.512	0.92
120_I	171_I	0.508	0.91
182_P	217_T	0.507	0.91
174_T	177_Q	0.507	0.91
216_A	220_R	0.507	0.91
97_R	182_P	0.506	0.91
291_S	295_I	0.506	0.91
230_L	233_L	0.506	0.91
369_E	383_L	0.506	0.91
111_N	114_I	0.505	0.91
15_N	323_S	0.504	0.91
117_L	120_I	0.503	0.91
134_H	154_A	0.503	0.91
24_R	31_K	0.502	0.91
185_S	188_I	0.501	0.91
232_V	236_V	0.501	0.91
182_P	188_I	0.500	0.91
47_L	52_A	0.500	0.91

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1k7wA	4	0.9662	100	0.168	Contact Map
2e9fA	4	0.9595	100	0.175	Contact Map
1tj7A	4	0.9707	100	0.183	Contact Map
1re5A	4	0.9459	100	0.211	Contact Map
3c8tA	4	0.9099	100	0.216	Contact Map
1q5nA	4	0.9167	100	0.218	Contact Map
1c3cA	4	0.9099	100	0.227	Contact Map
4eeiA	4	0.9054	100	0.239	Contact Map
2pfmA	4	0.9279	100	0.243	Contact Map
2j91A	4	0.964	100	0.264	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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