GREMLIN Database
VATI - V-type ATP synthase subunit I
UniProt: Q9UWW3 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 701 (631)
Sequences: 1680 (1277)
Seq/√Len: 50.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
495_D498_F5.7111.00
363_F403_I5.3531.00
109_E230_I4.6931.00
8_V284_E4.6041.00
113_L227_I4.1051.00
116_E223_R4.0861.00
370_L399_S3.7961.00
117_K224_I3.7181.00
332_E690_K3.6761.00
286_H289_K3.5111.00
404_I408_L3.5001.00
363_F407_L3.4911.00
14_S276_L3.4331.00
619_H663_E3.3901.00
605_N681_S3.3871.00
478_A609_F3.3611.00
120_Y220_I3.2941.00
285_K319_E3.2921.00
375_W379_Y3.2751.00
367_L403_I3.2541.00
341_E686_G3.2131.00
151_A202_V3.1741.00
364_G413_F3.0201.00
367_L370_L2.8981.00
373_S399_S2.8521.00
374_I396_I2.8211.00
553_G560_T2.8021.00
124_L217_Y2.7021.00
320_L328_E2.6441.00
124_L220_I2.6391.00
338_S687_R2.6161.00
321_P324_I2.6021.00
482_S679_M2.5811.00
117_K228_N2.5711.00
371_L375_W2.5531.00
128_E221_L2.5401.00
360_F663_E2.5391.00
407_L412_F2.5251.00
357_G405_T2.4881.00
556_I560_T2.4821.00
353_P401_V2.4291.00
355_L612_V2.4091.00
363_F412_F2.3761.00
500_F504_L2.3371.00
366_A403_I2.3261.00
480_F511_V2.3061.00
370_L396_I2.2991.00
553_G557_V2.2701.00
223_R226_Q2.2431.00
88_A91_D2.2311.00
288_K291_Q2.2221.00
33_Q689_R2.2201.00
559_W563_A2.1891.00
283_P286_H2.1881.00
370_L374_I2.1871.00
368_V660_I2.1571.00
10_L280_G2.1541.00
120_Y224_I2.1451.00
110_I235_R2.1441.00
347_F485_L2.1421.00
551_I555_G2.1051.00
124_L221_L2.0851.00
583_W587_I2.0811.00
260_R264_N2.0681.00
106_L234_T2.0591.00
225_N228_N2.0551.00
292_N296_N2.0311.00
399_S403_I2.0231.00
326_V329_S1.9771.00
519_Y523_D1.9761.00
263_L266_M1.9671.00
367_L412_F1.9120.99
229_I232_E1.8900.99
605_N671_D1.8890.99
554_Y557_V1.8770.99
222_E226_Q1.8680.99
8_V287_V1.8600.99
557_V561_S1.8600.99
615_F667_V1.8520.99
680_F684_Y1.8390.99
508_L512_V1.8320.99
6_N284_E1.8300.99
554_Y558_W1.8290.99
32_F280_G1.8220.99
117_K227_I1.8020.99
108_E112_R1.7990.99
487_V499_L1.7840.99
110_I234_T1.7820.99
226_Q230_I1.7730.99
562_F566_Y1.7570.99
373_S396_I1.7450.99
173_Y180_R1.7430.99
361_P619_H1.7180.99
561_S565_L1.7070.99
483_S598_G1.7070.99
663_E666_V1.7030.99
286_H317_L1.7020.99
370_L403_I1.7000.99
651_I655_G1.6950.99
563_A566_Y1.6840.98
121_Q228_N1.6820.98
484_L488_I1.6700.98
280_G413_F1.6500.98
360_F619_H1.6450.98
607_I625_A1.6430.98
253_Y257_L1.6410.98
347_F478_A1.6370.98
218_N222_E1.6370.98
291_Q295_N1.6370.98
18_A21_P1.6370.98
361_P409_A1.6300.98
51_R54_T1.6110.98
197_L202_V1.6060.98
260_R263_L1.5950.98
6_N340_W1.5880.98
29_L290_V1.5790.98
232_E236_E1.5680.98
10_L32_F1.5490.97
613_L619_H1.5400.97
373_S392_S1.5400.97
262_A265_I1.5280.97
559_W562_F1.5240.97
227_I230_I1.5220.97
452_L455_F1.5060.97
370_L400_I1.5060.97
259_V262_A1.5050.97
225_N229_I1.4770.96
550_N554_Y1.4690.96
263_L267_N1.4640.96
630_A652_L1.4630.96
468_M610_I1.4610.96
365_N656_N1.4610.96
478_A670_Q1.4590.96
282_F290_V1.4590.96
113_L231_L1.4550.96
181_Y185_I1.4530.96
111_G115_S1.4490.96
256_L259_V1.4460.96
498_F502_E1.4430.96
626_F655_G1.4420.96
566_Y569_A1.4390.96
487_V491_I1.4390.96
555_G559_W1.4380.96
365_N619_H1.4360.96
665_L668_F1.4340.96
215_Q219_E1.4280.96
619_H656_N1.4200.96
615_F670_Q1.4160.95
553_G556_I1.4130.95
120_Y124_L1.4080.95
14_S22_I1.4040.95
552_V559_W1.4030.95
214_F218_N1.3980.95
365_N659_A1.3960.95
102_R237_E1.3940.95
565_L568_W1.3900.95
555_G560_T1.3870.95
283_P317_L1.3840.95
112_R116_E1.3800.95
98_K102_R1.3800.95
334_Y615_F1.3760.95
486_G503_K1.3730.95
236_E240_K1.3620.94
662_L666_V1.3560.94
677_Y694_V1.3550.94
597_E600_L1.3460.94
486_G490_A1.3460.94
260_R265_I1.3450.94
125_K128_E1.3450.94
121_Q224_I1.3450.94
259_V263_L1.3420.94
633_V651_I1.3410.94
355_L474_L1.3360.94
320_L343_S1.3340.94
630_A648_A1.3330.94
11_Q279_E1.3310.94
589_M593_E1.3270.94
560_T567_N1.3240.93
360_F606_T1.3230.93
377_Y396_I1.3160.93
62_K69_L1.3160.93
502_E506_L1.3120.93
478_A482_S1.3090.93
625_A629_M1.3080.93
52_L55_A1.3050.93
359_M409_A1.2960.93
314_P335_G1.2940.93
554_Y563_A1.2940.93
559_W564_L1.2920.93
666_V670_Q1.2870.92
607_I662_L1.2860.92
114_R231_L1.2850.92
560_T568_W1.2810.92
233_R236_E1.2770.92
361_P405_T1.2700.92
363_F416_L1.2680.92
554_Y560_T1.2670.92
237_E240_K1.2660.92
115_S119_L1.2640.92
562_F567_N1.2570.92
353_P411_D1.2520.91
563_A568_W1.2500.91
508_L559_W1.2480.91
182_I186_I1.2470.91
582_T585_S1.2450.91
332_E336_S1.2440.91
345_I677_Y1.2380.91
585_S589_M1.2340.91
456_G459_S1.2290.91
351_T675_H1.2290.91
10_L290_V1.2190.90
114_R117_K1.2160.90
176_F180_R1.2130.90
451_F454_P1.2110.90
569_A577_R1.2100.90
374_I378_R1.2100.90
402_A663_E1.2080.90
335_G687_R1.2060.90
626_F658_L1.2040.90
621_Y625_A1.2040.90
136_E139_K1.1960.89
219_E223_R1.1890.89
676_F680_F1.1850.89
615_F666_V1.1840.89
8_V307_R1.1830.89
15_D18_A1.1820.89
255_K259_V1.1760.89
630_A651_I1.1690.88
66_I70_G1.1670.88
256_L264_N1.1670.88
563_A567_N1.1620.88
564_L567_N1.1600.88
281_Y614_V1.1580.88
283_P691_F1.1580.88
255_K263_L1.1570.88
560_T569_A1.1560.88
396_I400_I1.1520.88
261_D264_N1.1510.87
671_D681_S1.1490.87
609_F670_Q1.1370.87
400_I404_I1.1340.87
324_I345_I1.1340.87
359_M682_K1.1330.87
109_E237_E1.1320.87
600_L605_N1.1300.87
623_L659_A1.1290.86
347_F679_M1.1290.86
258_T263_L1.1270.86
64_K68_E1.1240.86
222_E225_N1.1170.86
355_L358_L1.1140.86
491_I496_P1.1110.86
100_E104_K1.1090.85
122_Q161_I1.1090.85
551_I560_T1.1080.85
253_Y260_R1.1060.85
365_N663_E1.1050.85
218_N221_L1.1050.85
560_T563_A1.1040.85
55_A58_D1.1030.85
365_N627_S1.1020.85
357_G401_V1.0950.85
257_L260_R1.0950.85
407_L418_V1.0920.85
478_A679_M1.0890.84
552_V564_L1.0860.84
679_M683_F1.0820.84
489_D493_K1.0820.84
609_F677_Y1.0810.84
159_R162_N1.0800.84
473_L518_M1.0800.84
253_Y264_N1.0790.84
417_P420_G1.0750.84
117_K121_Q1.0750.84
318_V337_P1.0730.84
260_R266_M1.0730.84
114_R235_R1.0720.83
553_G565_L1.0690.83
625_A662_L1.0680.83
558_W562_F1.0660.83
316_T336_S1.0620.83
659_A670_Q1.0610.83
622_I659_A1.0600.83
331_V348_L1.0560.83
54_T62_K1.0550.82
321_P346_V1.0530.82
130_I669_I1.0500.82
305_P308_Y1.0470.82
619_H659_A1.0460.82
604_S621_Y1.0450.82
552_V555_G1.0400.82
165_I193_V1.0400.82
373_S395_L1.0360.81
31_M290_V1.0350.81
155_E179_E1.0340.81
553_G563_A1.0310.81
663_E667_V1.0290.81
336_S690_K1.0280.81
272_S275_Y1.0270.81
228_N232_E1.0250.81
341_E489_D1.0250.81
360_F660_I1.0220.80
66_I69_L1.0160.80
619_H664_G1.0140.80
366_A402_A1.0130.80
535_L539_L1.0130.80
109_E112_R1.0100.80
630_A647_I1.0080.79
265_I694_V1.0060.79
365_N623_L1.0050.79
377_Y393_I1.0030.79
553_G558_W1.0010.79
14_S19_I0.9980.79
388_I391_L0.9950.79
348_L675_H0.9940.79
358_L470_F0.9900.78
331_V680_F0.9870.78
551_I554_Y0.9870.78
328_E332_E0.9840.78
597_E605_N0.9830.78
56_V59_H0.9820.78
553_G559_W0.9770.77
688_G693_P0.9750.77
597_E619_H0.9740.77
583_W586_A0.9740.77
482_S683_F0.9720.77
126_E290_V0.9710.77
124_L224_I0.9690.77
501_L566_Y0.9670.77
358_L405_T0.9650.76
230_I234_T0.9650.76
160_L200_A0.9600.76
630_A655_G0.9590.76
175_R180_R0.9590.76
292_N295_N0.9580.76
422_R425_L0.9560.76
366_A399_S0.9560.76
610_I613_L0.9530.76
552_V560_T0.9510.75
408_L488_I0.9500.75
342_I347_F0.9500.75
256_L263_L0.9480.75
616_A656_N0.9470.75
673_R678_E0.9430.75
674_L678_E0.9430.75
224_I228_N0.9420.75
656_N659_A0.9360.74
479_L602_L0.9360.74
554_Y564_L0.9360.74
215_Q218_N0.9360.74
60_V64_K0.9350.74
606_T619_H0.9350.74
55_A59_H0.9330.74
597_E672_L0.9320.74
211_K215_Q0.9300.74
610_I616_A0.9260.73
181_Y184_L0.9240.73
551_I559_W0.9210.73
63_L67_M0.9190.73
474_L665_L0.9150.73
343_S365_N0.9110.72
508_L566_Y0.9110.72
577_R581_A0.9110.72
258_T265_I0.9110.72
120_Y223_R0.9110.72
656_N663_E0.9100.72
111_G114_R0.9080.72
128_E217_Y0.9040.72
559_W566_Y0.9000.71
667_V677_Y0.8990.71
584_G587_I0.8960.71
507_F511_V0.8940.71
670_Q677_Y0.8930.71
110_I231_L0.8910.70
656_N677_Y0.8880.70
616_A670_Q0.8840.70
626_F664_G0.8840.70
236_E239_A0.8840.70
600_L604_S0.8810.70
557_V563_A0.8800.70
560_T564_L0.8790.69
656_N666_V0.8770.69
497_E500_F0.8770.69
282_F287_V0.8760.69
133_I213_P0.8750.69
94_E98_K0.8720.69
426_N451_F0.8680.68
659_A663_E0.8660.68
358_L616_A0.8660.68
557_V564_L0.8650.68
256_L265_I0.8640.68
335_G676_F0.8640.68
234_T237_E0.8640.68
352_F411_D0.8620.68
496_P500_F0.8610.68
389_P477_L0.8600.68
31_M691_F0.8600.68
229_I233_R0.8580.68
359_M668_F0.8530.67
502_E505_P0.8520.67
363_F662_L0.8490.67
593_E598_G0.8480.67
253_Y259_V0.8430.66
609_F612_V0.8420.66
666_V677_Y0.8420.66
605_N619_H0.8410.66
216_L220_I0.8400.66
560_T565_L0.8400.66
339_Y612_V0.8390.66
95_E98_K0.8390.66
556_I566_Y0.8380.66
32_F91_D0.8380.66
253_Y256_L0.8370.66
230_I233_R0.8360.66
615_F668_F0.8350.65
603_L607_I0.8350.65
290_V294_I0.8340.65
330_L668_F0.8330.65
613_L616_A0.8320.65
259_V264_N0.8320.65
608_S611_R0.8320.65
567_N684_Y0.8290.65
490_A498_F0.8280.65
338_S685_E0.8280.65
564_L568_W0.8270.65
412_F684_Y0.8260.65
106_L110_I0.8240.64
464_I468_M0.8220.64
353_P361_P0.8210.64
193_V540_N0.8210.64
364_G368_V0.8190.64
677_Y686_G0.8170.64
373_S377_Y0.8160.64
381_K481_V0.8140.63
347_F481_V0.8140.63
173_Y181_Y0.8130.63
227_I403_I0.8080.63
678_E688_G0.8070.63
691_F694_V0.8070.63
173_Y185_I0.8060.63
483_S615_F0.8040.62
360_F613_L0.8030.62
623_L656_N0.8000.62
103_Y238_L0.7960.62
316_T689_R0.7950.62
25_K293_E0.7900.61
316_T358_L0.7890.61
65_I247_N0.7880.61
623_L663_E0.7880.61
152_Q316_T0.7860.61
586_A593_E0.7860.61
361_P505_P0.7850.61
216_L219_E0.7840.61
626_F681_S0.7840.61
57_Q260_R0.7830.60
647_I650_I0.7820.60
52_L56_V0.7820.60
102_R241_K0.7810.60
359_M616_A0.7800.60
334_Y676_F0.7780.60
258_T262_A0.7780.60
184_L187_A0.7780.60
603_L610_I0.7770.60
262_A266_M0.7760.60
609_F666_V0.7750.60
359_M686_G0.7730.59
33_Q691_F0.7720.59
26_L30_G0.7710.59
552_V556_I0.7700.59
324_I676_F0.7690.59
516_I519_Y0.7690.59
223_R227_I0.7680.59
244_T248_Y0.7650.59
327_L359_M0.7650.59
361_P467_T0.7640.59
344_P683_F0.7640.59
27_L694_V0.7630.58
360_F365_N0.7620.58
154_D217_Y0.7610.58
576_K583_W0.7580.58
82_V154_D0.7570.58
365_N605_N0.7550.58
144_E161_I0.7550.58
236_E650_I0.7540.58
288_K292_N0.7530.57
314_P339_Y0.7530.57
620_Y667_V0.7520.57
256_L260_R0.7520.57
165_I223_R0.7520.57
331_V344_P0.7520.57
365_N612_V0.7490.57
220_I224_I0.7490.57
374_I377_Y0.7480.57
180_R185_I0.7470.57
464_I613_L0.7470.57
29_L692_E0.7460.57
257_L264_N0.7430.56
12_I117_K0.7430.56
557_V562_F0.7430.56
619_H662_L0.7400.56
466_N470_F0.7390.56
331_V671_D0.7380.56
642_V645_N0.7370.56
585_S588_A0.7360.56
587_I591_F0.7360.56
25_K297_L0.7340.56
58_D61_S0.7330.55
584_G589_M0.7320.55
560_T566_Y0.7320.55
365_N609_F0.7320.55
58_D63_L0.7320.55
458_Y461_S0.7310.55
556_I559_W0.7310.55
682_K688_G0.7300.55
506_L609_F0.7300.55
619_H666_V0.7300.55
358_L409_A0.7290.55
609_F694_V0.7260.55
619_H667_V0.7260.55
108_E111_G0.7250.55
31_M307_R0.7240.54
327_L622_I0.7240.54
411_D669_I0.7240.54
576_K579_D0.7240.54
653_I696_A0.7220.54
552_V557_V0.7220.54
265_I269_A0.7200.54
558_W561_S0.7180.54
307_R310_E0.7160.54
173_Y184_L0.7160.54
258_T266_M0.7160.54
359_M683_F0.7160.54
224_I472_V0.7150.54
84_S98_K0.7140.53
484_L507_F0.7140.53
365_N506_L0.7130.53
59_H93_S0.7110.53
480_F507_F0.7110.53
606_T666_V0.7100.53
506_L681_S0.7090.53
605_N627_S0.7080.53
609_F615_F0.7080.53
497_E501_L0.7080.53
219_E222_E0.7080.53
675_H682_K0.7070.53
32_F619_H0.7060.53
586_A597_E0.7060.53
96_A562_F0.7060.53
597_E663_E0.7040.52
19_I276_L0.7020.52
579_D583_W0.7020.52
373_S659_A0.7000.52
668_F675_H0.7000.52
605_N669_I0.6990.52
654_I658_L0.6980.52
81_K85_W0.6970.52
326_V395_L0.6970.52
59_H97_S0.6960.52
596_F600_L0.6930.51
370_L378_R0.6930.51
105_E109_E0.6930.51
331_V350_F0.6920.51
63_L66_I0.6920.51
405_T672_L0.6880.51
558_W565_L0.6880.51
683_F688_G0.6850.50
33_Q283_P0.6850.50
114_R227_I0.6840.50
319_E494_K0.6840.50
218_N236_E0.6840.50
469_I649_I0.6830.50
626_F632_L0.6820.50
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590_G595_G0.6820.50
508_L562_F0.6800.50
360_F664_G0.6800.50
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426_N511_V0.6790.50
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606_T663_E0.6780.50
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414_G478_A0.5630.38
281_Y290_V0.5630.38
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512_V656_N0.5620.38
463_S467_T0.5600.38
565_L569_A0.5600.38
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352_F617_L0.5470.37
360_F402_A0.5470.37
465_E587_I0.5470.37
218_N229_I0.5450.36
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226_Q229_I0.5440.36
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627_S648_A0.5420.36
71_G181_Y0.5410.36
458_Y489_D0.5410.36
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348_L680_F0.5400.36
412_F472_V0.5400.36
304_R376_F0.5400.36
295_N650_I0.5390.36
167_D226_Q0.5390.36
245_E500_F0.5380.36
360_F506_L0.5380.36
193_V303_I0.5380.36
231_L235_R0.5380.36
405_T615_F0.5380.36
483_S682_K0.5380.36
113_L223_R0.5370.36
359_M604_S0.5350.35
332_E345_I0.5350.35
671_D675_H0.5350.35
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604_S682_K0.5250.34
482_S687_R0.5250.34
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221_L225_N0.5230.34
33_Q339_Y0.5230.34
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510_Y517_F0.5200.34
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515_F566_Y0.5160.34
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222_E247_N0.5150.34
613_L676_F0.5150.34
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667_V686_G0.5140.33
256_L266_M0.5130.33
360_F662_L0.5130.33
59_H63_L0.5130.33
623_L664_G0.5130.33
116_E226_Q0.5130.33
344_P672_L0.5130.33
409_A663_E0.5120.33
132_S376_F0.5120.33
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482_S677_Y0.5110.33
569_A578_H0.5110.33
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324_I349_V0.5100.33
326_V394_I0.5100.33
206_E217_Y0.5100.33
350_F353_P0.5090.33
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537_Q561_S0.5090.33
485_L511_V0.5090.33
618_S622_I0.5090.33
369_L520_G0.5090.33
365_N478_A0.5080.33
616_A666_V0.5080.33
272_S468_M0.5080.33
10_L34_P0.5080.33
613_L669_I0.5080.33
30_G695_M0.5080.33
41_L44_E0.5080.33
314_P668_F0.5080.33
39_Y403_I0.5070.33
179_E290_V0.5070.33
627_S656_N0.5070.33
603_L606_T0.5060.33
338_S689_R0.5060.33
367_L488_I0.5050.33
483_S503_K0.5050.33
169_N172_Y0.5050.33
536_G539_L0.5050.33
353_P597_E0.5050.33
568_W577_R0.5050.33
140_L407_L0.5050.33
327_L672_L0.5040.33
653_I656_N0.5040.33
195_K223_R0.5040.33
138_S142_S0.5030.32
221_L224_I0.5030.32
161_I359_M0.5030.32
345_I360_F0.5030.32
141_Y150_L0.5030.32
358_L474_L0.5030.32
270_R352_F0.5030.32
76_P80_I0.5020.32
323_S466_N0.5020.32
607_I693_P0.5020.32
36_D614_V0.5020.32
8_V308_Y0.5010.32
367_L580_N0.5010.32
27_L610_I0.5010.32
24_T618_S0.5010.32
259_V266_M0.5000.32
86_I90_Q0.5000.32
682_K686_G0.5000.32
485_L576_K0.5000.32
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3j9tb 1 0.398 100 0.199 Contact Map
3rrkA 1 0.408 100 0.681 Contact Map
1u7lA 1 0.4223 96.5 0.959 Contact Map
2jtwA 1 0.0357 96.3 0.96 Contact Map
1i84S 2 0.067 91.1 0.968 Contact Map
3ojaB 1 0.234 84.5 0.972 Contact Map
2dfsA 2 0.2468 84.4 0.972 Contact Map
1fxkC 2 0.1897 83.9 0.972 Contact Map
1l8dA 2 0.1484 73.8 0.974 Contact Map
2zdiC 2 0.2097 73.2 0.974 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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