Q981E1 - SULSO - GREMLIN Contacts

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Q981E1 - Uncharacterized protein

UniProt:	Q981E1	Sequences: MKITFIGTGAGSSLGLKRVKSSILINDKVLLDLGPGAELRLEDLRIHPKALFITHLHIDHFSGVFDYLVQRKIRQIPELVIYSPKGFSEVLNIYTRIGNNISAKIYESDLPSGKIDEMEIYSIQACHSIYAVSYIISDGNTRVLYTGDTKEPCNAILENIKDVDLIIHETTCVDDCSIWGHTSIKQIFELFSNKRIFATHIPAEIEEKIISLANNKINIAFDGLSLNV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	228 (221)
Sequences:	7676 (5682)
Seq/√Len:	382.2

ECOLI - RBN PHNP
BACSU - RNZ YHFI YYCJ
HALSA - Q9HPR7 RNZ Q9HNK7
SULSO - Q981E1 RNZ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
144_L	163_V	4.546	1.00
164_D	194_K	3.528	1.00
135_I	142_R	3.347	1.00
5_F	8_T	3.304	1.00
195_R	218_N	3.003	1.00
2_K	225_S	2.994	1.00
157_L	193_N	2.964	1.00
2_K	26_N	2.850	1.00
121_Y	137_S	2.755	1.00
191_F	196_I	2.592	1.00
31_L	136_I	2.420	1.00
88_S	92_N	2.322	1.00
5_F	220_A	2.260	1.00
119_E	137_S	2.209	1.00
50_A	80_V	2.163	1.00
165_L	197_F	2.147	1.00
40_R	43_D	2.138	1.00
137_S	142_R	2.134	1.00
123_I	159_N	2.127	1.00
144_L	160_I	2.077	1.00
125_A	133_S	2.049	1.00
168_H	182_T	2.000	1.00
52_F	120_I	1.901	1.00
24_L	28_K	1.893	1.00
189_E	193_N	1.873	1.00
22_S	37_A	1.825	1.00
158_E	161_K	1.823	1.00
125_A	131_A	1.812	1.00
114_K	119_E	1.807	1.00
143_V	167_I	1.796	1.00
80_V	108_S	1.795	1.00
195_R	216_K	1.735	1.00
160_I	163_V	1.694	1.00
142_R	163_V	1.660	1.00
154_N	193_N	1.641	1.00
44_L	223_G	1.641	1.00
218_N	224_L	1.623	1.00
4_T	225_S	1.608	1.00
167_I	199_T	1.598	1.00
33_L	53_I	1.571	1.00
112_S	121_Y	1.542	1.00
131_A	147_G	1.536	1.00
146_T	168_H	1.528	1.00
221_F	224_L	1.486	1.00
197_F	220_A	1.478	1.00
138_D	141_T	1.470	1.00
197_F	218_N	1.467	1.00
50_A	82_Y	1.460	1.00
186_Q	189_E	1.452	1.00
125_A	146_T	1.434	1.00
4_T	26_N	1.422	1.00
36_G	39_L	1.390	1.00
52_F	134_Y	1.388	1.00
154_N	157_L	1.384	1.00
126_C	150_K	1.377	1.00
170_T	198_A	1.366	1.00
124_Q	130_Y	1.350	1.00
209_I	213_A	1.340	1.00
80_V	106_Y	1.336	1.00
21_S	145_Y	1.333	1.00
37_A	41_L	1.323	1.00
5_F	197_F	1.320	1.00
210_I	214_N	1.318	1.00
29_V	50_A	1.314	1.00
135_I	144_L	1.300	1.00
29_V	118_M	1.270	1.00
135_I	163_V	1.260	1.00
8_T	18_R	1.251	1.00
49_K	77_P	1.242	1.00
5_F	23_I	1.238	1.00
184_I	188_F	1.235	1.00
31_L	52_F	1.222	1.00
5_F	167_I	1.183	1.00
3_I	143_V	1.166	1.00
19_V	39_L	1.162	1.00
83_S	87_F	1.153	1.00
185_K	189_E	1.153	1.00
114_K	117_E	1.142	1.00
209_I	212_L	1.138	1.00
112_S	119_E	1.133	1.00
157_L	161_K	1.130	1.00
150_K	186_Q	1.127	1.00
83_S	88_S	1.122	1.00
133_S	146_T	1.121	1.00
157_L	190_L	1.120	1.00
30_L	37_A	1.113	1.00
146_T	149_T	1.108	1.00
189_E	192_S	1.100	1.00
155_A	158_E	1.096	1.00
54_T	134_Y	1.094	1.00
122_S	134_Y	1.091	1.00
209_I	214_N	1.087	1.00
141_T	164_D	1.083	1.00
165_L	195_R	1.077	1.00
60_H	200_H	1.073	1.00
183_S	186_Q	1.070	1.00
58_I	62_S	1.070	1.00
112_S	115_I	1.067	1.00
220_A	224_L	1.064	1.00
53_I	64_V	1.063	1.00
101_I	104_K	1.056	1.00
78_E	106_Y	1.055	1.00
123_I	156_I	1.047	1.00
199_T	220_A	1.038	1.00
51_L	64_V	1.035	1.00
27_D	117_E	1.034	1.00
23_I	199_T	1.031	1.00
89_E	95_T	1.026	1.00
188_F	191_F	1.016	1.00
208_K	212_L	1.005	1.00
25_I	136_I	1.005	1.00
170_T	187_I	1.001	1.00
8_T	222_D	0.998	1.00
3_I	25_I	0.983	1.00
3_I	23_I	0.970	1.00
188_F	192_S	0.967	1.00
106_Y	110_L	0.966	1.00
27_D	118_M	0.961	1.00
24_L	46_I	0.958	1.00
84_P	132_V	0.956	1.00
210_I	213_A	0.954	1.00
168_H	187_I	0.953	1.00
24_L	30_L	0.948	1.00
94_Y	97_I	0.947	1.00
3_I	165_L	0.942	1.00
153_C	156_I	0.940	1.00
89_E	93_I	0.937	1.00
192_S	214_N	0.935	1.00
111_P	115_I	0.932	1.00
150_K	182_T	0.929	1.00
30_L	33_L	0.920	1.00
39_L	43_D	0.917	1.00
105_I	109_D	0.914	1.00
197_F	224_L	0.914	1.00
29_V	120_I	0.913	1.00
150_K	180_G	0.913	1.00
185_K	212_L	0.911	1.00
128_S	180_G	0.900	1.00
28_K	47_H	0.897	1.00
201_I	219_I	0.896	1.00
89_E	92_N	0.890	1.00
6_I	22_S	0.889	1.00
170_T	184_I	0.888	1.00
27_D	138_D	0.879	1.00
54_T	145_Y	0.874	1.00
149_T	156_I	0.867	1.00
33_L	37_A	0.866	1.00
211_S	214_N	0.865	1.00
166_I	191_F	0.861	1.00
56_L	86_G	0.853	1.00
214_N	217_I	0.853	1.00
120_I	136_I	0.850	1.00
3_I	167_I	0.849	1.00
9_G	18_R	0.847	1.00
161_K	193_N	0.845	1.00
29_V	136_I	0.845	1.00
56_L	87_F	0.844	1.00
28_K	49_K	0.842	1.00
35_P	38_E	0.839	1.00
40_R	223_G	0.836	1.00
162_D	194_K	0.831	1.00
52_F	113_G	0.830	1.00
169_E	182_T	0.827	1.00
101_I	105_I	0.821	1.00
33_L	51_L	0.820	1.00
103_A	108_S	0.820	1.00
31_L	134_Y	0.818	1.00
168_H	190_L	0.817	1.00
51_L	67_Y	0.815	1.00
183_S	187_I	0.814	1.00
84_P	87_F	0.814	1.00
100_N	103_A	0.813	1.00
85_K	89_E	0.804	1.00
191_F	198_A	0.802	1.00
52_F	82_Y	0.802	1.00
209_I	215_N	0.799	1.00
38_E	42_E	0.799	1.00
156_I	159_N	0.792	1.00
25_I	143_V	0.791	1.00
160_I	166_I	0.786	1.00
100_N	104_K	0.783	1.00
30_L	48_P	0.783	1.00
112_S	122_S	0.782	1.00
19_V	43_D	0.779	1.00
105_I	108_S	0.779	1.00
154_N	158_E	0.777	1.00
111_P	121_Y	0.775	1.00
171_T	202_P	0.773	1.00
125_A	147_G	0.773	1.00
18_R	222_D	0.771	1.00
53_I	87_F	0.770	1.00
187_I	191_F	0.770	1.00
95_T	98_G	0.769	1.00
51_L	79_L	0.768	1.00
145_Y	199_T	0.768	1.00
146_T	156_I	0.767	1.00
121_Y	159_N	0.762	1.00
173_V	177_S	0.761	1.00
92_N	95_T	0.755	1.00
23_I	31_L	0.754	1.00
172_C	179_W	0.750	1.00
94_Y	98_G	0.734	1.00
29_V	52_F	0.734	1.00
56_L	61_F	0.733	1.00
31_L	54_T	0.733	1.00
93_I	96_R	0.733	1.00
175_D	212_L	0.727	1.00
125_A	149_T	0.726	1.00
78_E	104_K	0.725	1.00
123_I	135_I	0.725	1.00
122_S	132_V	0.724	1.00
31_L	145_Y	0.722	1.00
38_E	66_D	0.721	1.00
50_A	115_I	0.720	1.00
19_V	40_R	0.719	1.00
184_I	205_I	0.719	1.00
213_A	217_I	0.706	1.00
145_Y	167_I	0.702	1.00
210_I	218_N	0.699	0.99
146_T	166_I	0.696	0.99
101_I	108_S	0.694	0.99
135_I	159_N	0.689	0.99
102_S	105_I	0.688	0.99
84_P	124_Q	0.681	0.99
68_L	79_L	0.674	0.99
198_A	217_I	0.673	0.99
208_K	211_S	0.673	0.99
123_I	133_S	0.671	0.99
25_I	31_L	0.667	0.99
153_C	157_L	0.666	0.99
35_P	66_D	0.666	0.99
126_C	153_C	0.664	0.99
106_Y	109_D	0.663	0.99
126_C	180_G	0.662	0.99
104_K	108_S	0.662	0.99
85_K	109_D	0.660	0.99
146_T	169_E	0.658	0.99
189_E	212_L	0.658	0.99
29_V	115_I	0.655	0.99
201_I	205_I	0.655	0.99
120_I	134_Y	0.654	0.99
40_R	44_L	0.652	0.99
172_C	176_C	0.648	0.99
10_A	171_T	0.648	0.99
22_S	25_I	0.648	0.99
21_S	199_T	0.640	0.99
35_P	63_G	0.635	0.99
86_G	109_D	0.635	0.99
152_P	157_L	0.631	0.99
144_L	166_I	0.629	0.99
188_F	196_I	0.627	0.99
168_H	196_I	0.626	0.99
174_D	178_I	0.625	0.99
150_K	177_S	0.625	0.99
111_P	114_K	0.624	0.99
22_S	30_L	0.624	0.99
30_L	51_L	0.621	0.99
209_I	219_I	0.619	0.99
16_L	20_K	0.615	0.99
104_K	107_E	0.614	0.99
121_Y	135_I	0.614	0.99
152_P	189_E	0.612	0.99
44_L	225_S	0.599	0.98
9_G	17_K	0.597	0.98
56_L	84_P	0.596	0.98
90_V	93_I	0.596	0.98
64_V	81_I	0.596	0.98
143_V	165_L	0.595	0.98
149_T	169_E	0.594	0.98
56_L	83_S	0.592	0.98
142_R	164_D	0.592	0.98
36_G	40_R	0.591	0.98
182_T	190_L	0.590	0.98
213_A	216_K	0.587	0.98
22_S	34_G	0.582	0.98
169_E	181_H	0.580	0.98
82_Y	113_G	0.580	0.98
71_R	77_P	0.579	0.98
124_Q	132_V	0.575	0.98
175_D	179_W	0.575	0.98
9_G	15_G	0.575	0.98
138_D	164_D	0.574	0.98
107_E	110_L	0.572	0.98
82_Y	108_S	0.572	0.98
113_G	118_M	0.566	0.98
4_T	44_L	0.566	0.98
19_V	22_S	0.566	0.98
188_F	213_A	0.565	0.98
20_K	23_I	0.564	0.98
111_P	122_S	0.564	0.98
192_S	212_L	0.564	0.98
157_L	160_I	0.563	0.98
16_L	206_E	0.560	0.98
88_S	109_D	0.560	0.98
101_I	107_E	0.556	0.97
65_F	69_V	0.554	0.97
198_A	201_I	0.554	0.97
212_L	215_N	0.553	0.97
35_P	40_R	0.553	0.97
23_I	167_I	0.552	0.97
53_I	91_L	0.551	0.97
20_K	35_P	0.547	0.97
99_N	102_S	0.544	0.97
177_S	186_Q	0.543	0.97
202_P	205_I	0.542	0.97
211_S	217_I	0.540	0.97
170_T	183_S	0.539	0.97
28_K	48_P	0.539	0.97
187_I	196_I	0.538	0.97
94_Y	99_N	0.538	0.97
149_T	168_H	0.537	0.97
56_L	90_V	0.536	0.97
14_L	35_P	0.535	0.97
103_A	107_E	0.531	0.97
105_I	110_L	0.529	0.97
188_F	217_I	0.528	0.97
53_I	61_F	0.528	0.97
23_I	27_D	0.527	0.97
23_I	145_Y	0.526	0.96
137_S	140_N	0.522	0.96
41_L	46_I	0.521	0.96
102_S	106_Y	0.520	0.96
147_G	200_H	0.519	0.96
133_S	144_L	0.517	0.96
71_R	79_L	0.515	0.96
210_I	217_I	0.515	0.96
72_K	102_S	0.513	0.96
133_S	149_T	0.509	0.96
96_R	99_N	0.509	0.96
163_V	166_I	0.501	0.95
18_R	21_S	0.500	0.95
159_N	163_V	0.500	0.95

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3zwfA	2	0.9474	100	0.268	Contact Map
1y44A	2	0.9912	100	0.307	Contact Map
2cbnA	2	0.9868	100	0.311	Contact Map
1zkpA	2	0.9825	100	0.394	Contact Map
3jxpA	2	0.9649	100	0.395	Contact Map
3g1pA	2	0.9737	100	0.406	Contact Map
3md7A	2	0.9693	100	0.406	Contact Map
4ojvA	2	0.9825	100	0.421	Contact Map
2e7yA	2	0.943	100	0.444	Contact Map
3bk2A	2	0.9693	100	0.535	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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