Q981D4 - SULSO - GREMLIN Contacts

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Q981D4 - Uncharacterized protein

UniProt:	Q981D4	Sequences: MYMILELLNIIGIIAFTISGSLKGTNKGLDIFGVVTLGVITSYAGGIIADILLGIYPPQILKELNYLLLSVGISIFVFYFYKWLQTNPIKMIIAISDAVGLSTFATLGASLAYSYGLNPISVGLIAAIVGTGGGVIRDVLVNEIPMVLTKEIYATAALLSGFIYYFTTPYLHHDSLFVAFLGSFLLRILSIKYNFNLPKREDNKS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	205 (193)
Sequences:	2513 (1719)
Seq/√Len:	123.8

ECOLI - YICG YADS
BACSU - YVGT
HALSA - Q9HSC6
SULSO - Q981D4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
105_A	157_A	3.853	1.00
27_K	143_E	3.595	1.00
55_I	111_L	3.419	1.00
37_L	141_V	3.287	1.00
14_I	73_I	3.208	1.00
163_I	182_G	3.117	1.00
38_G	74_S	3.112	1.00
189_L	193_Y	2.971	1.00
160_S	183_S	2.838	1.00
40_I	140_L	2.737	1.00
102_S	184_F	2.587	1.00
99_V	184_F	2.550	1.00
47_I	60_I	2.524	1.00
184_F	188_I	2.367	1.00
109_A	161_G	2.322	1.00
113_Y	122_V	2.318	1.00
101_L	130_G	2.253	1.00
29_L	141_V	2.138	1.00
55_I	115_Y	2.058	1.00
94_A	191_I	2.054	1.00
127_A	158_L	2.042	1.00
189_L	195_F	1.989	1.00
95_I	188_I	1.974	1.00
23_K	141_V	1.928	1.00
177_F	181_L	1.897	1.00
152_I	156_A	1.897	1.00
101_L	157_A	1.833	1.00
6_E	10_I	1.773	1.00
166_F	170_Y	1.685	1.00
42_S	70_S	1.670	1.00
53_L	117_L	1.646	1.00
143_E	149_T	1.583	1.00
54_G	57_P	1.568	1.00
117_L	121_S	1.527	1.00
109_A	122_V	1.526	1.00
16_F	100_G	1.503	1.00
43_Y	70_S	1.488	1.00
159_L	186_L	1.477	1.00
123_G	165_Y	1.473	1.00
18_I	77_V	1.465	1.00
156_A	186_L	1.461	1.00
35_V	71_V	1.458	1.00
64_L	68_L	1.445	1.00
112_A	125_I	1.436	1.00
52_L	61_L	1.422	1.00
109_A	165_Y	1.410	1.00
122_V	165_Y	1.399	1.00
140_L	148_L	1.387	1.00
9_N	66_Y	1.375	1.00
39_V	70_S	1.373	1.00
31_I	78_F	1.372	1.00
190_S	195_F	1.364	1.00
167_T	172_H	1.344	1.00
12_G	16_F	1.341	1.00
167_T	175_S	1.339	1.00
181_L	185_L	1.333	1.00
28_G	199_K	1.310	1.00
48_I	128_I	1.307	1.00
32_F	154_A	1.298	1.00
84_L	88_P	1.280	1.00
123_G	162_F	1.276	1.00
176_L	180_F	1.269	1.00
44_A	136_I	1.264	1.00
125_I	129_V	1.263	1.00
68_L	72_G	1.261	1.00
131_T	147_V	1.256	1.00
175_S	179_A	1.238	0.99
135_V	147_V	1.230	0.99
48_I	132_G	1.223	0.99
71_V	75_I	1.198	0.99
6_E	65_N	1.184	0.99
6_E	63_E	1.184	0.99
102_S	106_T	1.175	0.99
102_S	180_F	1.175	0.99
35_V	74_S	1.166	0.99
38_G	70_S	1.164	0.99
166_F	169_P	1.146	0.99
111_L	115_Y	1.139	0.99
40_I	136_I	1.129	0.99
119_P	165_Y	1.126	0.99
106_T	183_S	1.122	0.99
105_A	109_A	1.117	0.99
98_A	184_F	1.108	0.99
119_P	123_G	1.094	0.99
98_A	188_I	1.092	0.99
73_I	77_V	1.089	0.99
102_S	160_S	1.079	0.99
162_F	166_F	1.069	0.98
13_I	16_F	1.059	0.98
53_L	115_Y	1.043	0.98
105_A	161_G	1.039	0.98
47_I	132_G	1.035	0.98
105_A	183_S	1.031	0.98
34_V	78_F	1.025	0.98
14_I	69_L	1.005	0.98
48_I	136_I	1.000	0.98
36_T	148_L	0.998	0.98
109_A	164_Y	0.993	0.98
155_T	197_L	0.992	0.97
109_A	126_A	0.982	0.97
36_T	154_A	0.978	0.97
94_A	98_A	0.976	0.97
21_S	34_V	0.975	0.97
8_L	103_T	0.970	0.97
156_A	160_S	0.962	0.97
25_T	34_V	0.961	0.97
150_K	196_N	0.959	0.97
186_L	195_F	0.957	0.97
19_S	96_S	0.955	0.97
130_G	183_S	0.948	0.97
159_L	182_G	0.947	0.97
13_I	43_Y	0.941	0.97
190_S	194_N	0.930	0.96
160_S	179_A	0.919	0.96
110_S	114_S	0.919	0.96
145_P	148_L	0.916	0.96
18_I	96_S	0.912	0.96
196_N	199_K	0.906	0.96
188_I	192_K	0.906	0.96
127_A	131_T	0.902	0.96
39_V	67_L	0.897	0.95
100_G	104_F	0.895	0.95
70_S	78_F	0.889	0.95
16_F	19_S	0.880	0.95
14_I	18_I	0.872	0.95
24_G	34_V	0.870	0.95
103_T	180_F	0.868	0.95
60_I	121_S	0.867	0.95
182_G	186_L	0.864	0.94
106_T	167_T	0.861	0.94
60_I	132_G	0.860	0.94
103_T	107_L	0.857	0.94
13_I	17_T	0.856	0.94
163_I	167_T	0.845	0.94
106_T	179_A	0.843	0.94
12_G	104_F	0.830	0.93
15_A	100_G	0.825	0.93
152_I	197_L	0.820	0.93
164_Y	179_A	0.814	0.92
32_F	131_T	0.810	0.92
123_G	158_L	0.809	0.92
29_L	144_I	0.809	0.92
18_I	73_I	0.801	0.92
47_I	59_Q	0.785	0.91
47_I	52_L	0.777	0.91
152_I	186_L	0.771	0.90
127_A	154_A	0.770	0.90
102_S	183_S	0.761	0.90
76_F	166_F	0.753	0.89
53_L	112_A	0.751	0.89
70_S	74_S	0.751	0.89
93_I	96_S	0.744	0.89
9_N	23_K	0.741	0.89
126_A	179_A	0.741	0.89
8_L	180_F	0.739	0.88
99_V	103_T	0.735	0.88
78_F	200_R	0.735	0.88
32_F	36_T	0.729	0.88
10_I	69_L	0.727	0.88
58_P	61_L	0.726	0.87
79_Y	83_W	0.716	0.87
11_I	195_F	0.704	0.86
135_V	148_L	0.704	0.86
30_D	145_P	0.700	0.86
118_N	125_I	0.699	0.85
110_S	164_Y	0.698	0.85
144_I	147_V	0.698	0.85
163_I	179_A	0.697	0.85
135_V	146_M	0.696	0.85
106_T	164_Y	0.689	0.85
59_Q	66_Y	0.688	0.85
27_K	109_A	0.687	0.84
72_G	173_H	0.684	0.84
121_S	125_I	0.684	0.84
167_T	171_L	0.683	0.84
122_V	126_A	0.682	0.84
71_V	74_S	0.681	0.84
135_V	140_L	0.681	0.84
7_L	173_H	0.678	0.84
102_S	126_A	0.677	0.84
25_T	200_R	0.673	0.83
5_L	103_T	0.667	0.83
101_L	183_S	0.655	0.82
144_I	149_T	0.655	0.82
67_L	120_I	0.654	0.81
9_N	18_I	0.652	0.81
16_F	20_G	0.652	0.81
25_T	81_Y	0.652	0.81
188_I	191_I	0.649	0.81
171_L	178_V	0.645	0.81
9_N	16_F	0.644	0.80
158_L	161_G	0.643	0.80
89_I	92_I	0.640	0.80
164_Y	168_T	0.638	0.80
64_L	118_N	0.634	0.79
37_L	142_N	0.634	0.79
70_S	73_I	0.634	0.79
19_S	100_G	0.632	0.79
11_I	15_A	0.630	0.79
77_V	81_Y	0.630	0.79
163_I	178_V	0.629	0.79
39_V	43_Y	0.627	0.79
156_A	190_S	0.626	0.79
32_F	158_L	0.626	0.79
61_L	117_L	0.625	0.78
37_L	136_I	0.625	0.78
43_Y	67_L	0.623	0.78
61_L	121_S	0.622	0.78
117_L	122_V	0.617	0.78
67_L	124_L	0.615	0.77
18_I	84_L	0.615	0.77
10_I	14_I	0.615	0.77
168_T	175_S	0.613	0.77
34_V	74_S	0.613	0.77
109_A	183_S	0.603	0.76
74_S	78_F	0.601	0.76
165_Y	168_T	0.600	0.76
106_T	176_L	0.598	0.75
107_L	129_V	0.597	0.75
104_F	130_G	0.596	0.75
113_Y	168_T	0.596	0.75
59_Q	129_V	0.592	0.75
40_I	44_A	0.590	0.74
178_V	182_G	0.590	0.74
43_Y	156_A	0.590	0.74
105_A	160_S	0.590	0.74
20_G	147_V	0.589	0.74
159_L	188_I	0.585	0.74
41_T	44_A	0.584	0.74
26_N	29_L	0.582	0.73
68_L	120_I	0.581	0.73
104_F	187_R	0.579	0.73
95_I	99_V	0.578	0.73
29_L	148_L	0.576	0.73
150_K	183_S	0.576	0.73
23_K	27_K	0.575	0.73
60_I	164_Y	0.573	0.72
39_V	42_S	0.572	0.72
9_N	13_I	0.572	0.72
21_S	74_S	0.571	0.72
131_T	154_A	0.570	0.72
30_D	153_Y	0.568	0.72
39_V	74_S	0.565	0.71
169_P	181_L	0.564	0.71
48_I	52_L	0.564	0.71
66_Y	69_L	0.562	0.71
170_Y	173_H	0.561	0.71
21_S	77_V	0.559	0.70
33_G	37_L	0.557	0.70
52_L	128_I	0.556	0.70
21_S	38_G	0.554	0.70
142_N	189_L	0.549	0.69
12_G	96_S	0.547	0.69
167_T	179_A	0.547	0.69
31_I	192_K	0.546	0.69
32_F	150_K	0.542	0.68
107_L	179_A	0.541	0.68
72_G	76_F	0.535	0.67
37_L	129_V	0.534	0.67
116_G	119_P	0.532	0.67
21_S	25_T	0.531	0.67
25_T	77_V	0.528	0.66
29_L	33_G	0.527	0.66
53_L	111_L	0.525	0.66
9_N	93_I	0.523	0.65
47_I	51_I	0.523	0.65
72_G	178_V	0.522	0.65
7_L	11_I	0.520	0.65
50_D	111_L	0.519	0.65
51_I	85_Q	0.519	0.65
15_A	96_S	0.517	0.64
65_N	69_L	0.516	0.64
59_Q	125_I	0.516	0.64
5_L	107_L	0.516	0.64
20_G	158_L	0.513	0.64
107_L	111_L	0.513	0.64
126_A	156_A	0.513	0.64
139_V	182_G	0.512	0.64
48_I	147_V	0.511	0.64
9_N	124_L	0.510	0.63
157_A	164_Y	0.510	0.63
15_A	69_L	0.509	0.63
53_L	136_I	0.508	0.63
172_H	178_V	0.507	0.63
118_N	121_S	0.504	0.63
95_I	191_I	0.504	0.63
71_V	82_K	0.502	0.62
36_T	124_L	0.501	0.62
24_G	37_L	0.501	0.62
22_L	85_Q	0.500	0.62

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2f2bA	4	0.4195	3.7	0.966	Contact Map
1vryA	1	0.1659	2.2	0.97	Contact Map
2cfqA	1	0.8683	1.9	0.971	Contact Map
3llqA	3	0.4146	1.6	0.972	Contact Map
2gfpA	2	0.8341	1.4	0.973	Contact Map
3cn5A	3	0.4293	1.4	0.973	Contact Map
3wu2J	1	0.1902	1.3	0.974	Contact Map
4qncA	2	0.361	1.3	0.974	Contact Map
1s4zC	1	0.1415	1.2	0.974	Contact Map
2jlnA	1	0.4488	1.2	0.974	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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