GREMLIN Database
Q981B3 - SOJ protein (Soj)
UniProt: Q981B3 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 220 (210)
Sequences: 16606 (10994)
Seq/√Len: 758.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
68_E99_F4.3481.00
179_P206_K4.3451.00
18_S103_V3.9901.00
25_L101_F3.4571.00
27_K212_Q3.3621.00
29_K101_F3.2111.00
17_T207_L3.0651.00
193_P196_R3.0401.00
32_G99_F2.9341.00
4_T121_A2.8301.00
19_V42_A2.8231.00
33_L42_A2.7731.00
45_S133_L2.2601.00
183_L186_E2.2311.00
30_K100_D2.2211.00
22_S33_L2.1991.00
18_S33_L2.1501.00
24_Y211_Y2.1451.00
24_Y195_L2.1421.00
5_V21_L2.1191.00
114_A117_A2.0501.00
25_L103_V2.0321.00
27_K208_A2.0201.00
176_I213_Q1.9521.00
44_I136_E1.8841.00
113_L117_A1.7911.00
26_S67_V1.7881.00
129_T165_L1.7871.00
19_V45_S1.7811.00
36_L117_A1.7421.00
22_S103_V1.6981.00
5_V125_V1.6821.00
123_R159_S1.6581.00
176_I210_Y1.6351.00
4_T106_T1.6191.00
175_E213_Q1.5911.00
41_G137_A1.5721.00
29_K100_D1.5241.00
182_R186_E1.5171.00
21_L214_L1.5161.00
26_S66_N1.5131.00
181_S203_K1.4961.00
131_Q134_A1.4961.00
36_L104_I1.4911.00
19_V46_Y1.4841.00
166_D170_S1.4591.00
201_R204_K1.4481.00
41_G133_L1.4451.00
6_I141_L1.4321.00
159_S162_V1.4271.00
5_V18_S1.3781.00
24_Y27_K1.3771.00
25_L31_T1.3751.00
46_Y67_V1.3751.00
21_L211_Y1.3741.00
22_S42_A1.3651.00
25_L211_Y1.3651.00
124_I145_L1.3221.00
32_G102_L1.3121.00
205_P208_A1.2921.00
186_E190_L1.2911.00
15_T45_S1.2661.00
184_F203_K1.2611.00
166_D169_S1.2441.00
6_I106_T1.2441.00
29_K215_A1.2041.00
30_K98_Q1.2031.00
192_V197_Y1.1931.00
165_L180_P1.1881.00
209_N212_Q1.1801.00
208_A212_Q1.1771.00
59_E63_N1.1761.00
22_S67_V1.1741.00
174_T177_T1.1731.00
183_L198_E1.1671.00
133_L188_S1.1661.00
20_N23_Y1.1641.00
20_N195_L1.1641.00
74_I140_N1.1561.00
210_Y214_L1.1501.00
86_E89_S1.1451.00
48_M69_V1.1421.00
131_Q185_I1.1281.00
17_T162_V1.1271.00
34_L104_I1.1101.00
68_E97_K1.1091.00
17_T21_L1.1061.00
80_E111_G1.1021.00
199_E204_K1.0971.00
5_V17_T1.0871.00
83_G86_E1.0801.00
34_L102_L1.0761.00
38_P113_L1.0751.00
15_T42_A1.0721.00
64_I196_R1.0711.00
91_K94_E1.0671.00
192_V196_R1.0571.00
46_Y69_V1.0461.00
114_A119_L1.0361.00
89_S93_K1.0341.00
39_E108_P1.0271.00
162_V165_L1.0221.00
178_I203_K1.0191.00
69_V74_I1.0191.00
9_K133_L1.0181.00
153_Y156_T1.0151.00
143_S146_K0.9941.00
206_K209_N0.9931.00
101_F215_A0.9851.00
129_T134_A0.9831.00
209_N213_Q0.9801.00
116_S119_L0.9771.00
6_I114_A0.9751.00
181_S201_R0.9671.00
27_K215_A0.9631.00
130_P163_V0.9611.00
16_T184_F0.9581.00
12_V134_A0.9561.00
24_Y208_A0.9511.00
204_K208_A0.9511.00
60_K63_N0.9331.00
203_K206_K0.9331.00
195_L208_A0.9301.00
17_T127_P0.9281.00
202_I205_P0.9231.00
20_N193_P0.9131.00
3_V101_F0.9111.00
190_L197_Y0.9071.00
16_T188_S0.9011.00
198_E201_R0.9011.00
23_Y195_L0.9011.00
40_G72_A0.8891.00
114_A118_M0.8881.00
106_T117_A0.8841.00
99_F102_L0.8831.00
87_E91_K0.8821.00
3_V123_R0.8761.00
14_K108_P0.8721.00
91_K95_I0.8691.00
31_T101_F0.8671.00
113_L119_L0.8671.00
155_F158_F0.8651.00
126_S138_I0.8601.00
3_V214_L0.8481.00
126_S141_L0.8481.00
40_G43_T0.8421.00
194_A204_K0.8311.00
43_T73_H0.8131.00
90_N94_E0.8061.00
9_K14_K0.7961.00
68_E71_P0.7941.00
96_G122_D0.7891.00
18_S42_A0.7891.00
202_I206_K0.7861.00
173_F213_Q0.7841.00
13_G17_T0.7811.00
13_G164_K0.7791.00
41_G134_A0.7781.00
23_Y196_R0.7621.00
126_S142_D0.7581.00
84_D87_E0.7571.00
44_I132_P0.7491.00
178_I206_K0.7451.00
31_T67_V0.7441.00
170_S173_F0.7431.00
157_N160_K0.7431.00
86_E90_N0.7391.00
41_G136_E0.7341.00
159_S163_V0.7341.00
8_Q144_R0.7321.00
132_P136_E0.7311.00
5_V103_V0.7301.00
160_K165_L0.7301.00
43_T71_P0.7201.00
115_I144_R0.7171.00
4_T117_A0.7081.00
64_I67_V0.7051.00
54_E59_E0.7051.00
88_I91_K0.7051.00
106_T114_A0.6941.00
194_A203_K0.6941.00
33_L46_Y0.6931.00
184_F188_S0.6911.00
161_K165_L0.6911.00
167_N170_S0.6901.00
162_V210_Y0.6871.00
83_G90_N0.6851.00
92_I120_V0.6841.00
119_L152_A0.6831.00
103_V214_L0.6821.00
96_G102_L0.6801.00
23_Y193_P0.6731.00
139_K169_S0.6731.00
23_Y67_V0.6681.00
7_N12_V0.6671.00
50_R53_K0.6661.00
195_L204_K0.6651.00
31_T100_D0.6621.00
30_K99_F0.6581.00
179_P202_I0.6561.00
111_G114_A0.6551.00
205_P209_N0.6501.00
142_D146_K0.6471.00
113_L116_S0.6471.00
63_N98_Q0.6471.00
9_K12_V0.6461.00
157_N162_V0.6461.00
181_S202_I0.6451.00
27_K211_Y0.6451.00
187_A194_A0.6431.00
151_N155_F0.6421.00
159_S164_K0.6421.00
174_T213_Q0.6411.00
117_A121_A0.6361.00
19_V33_L0.6321.00
158_F161_K0.6321.00
58_G62_V0.6321.00
76_L79_L0.6311.00
15_T41_G0.6281.00
200_V205_P0.6281.00
139_K143_S0.6231.00
59_E62_V0.6231.00
207_L210_Y0.6181.00
160_K164_K0.6171.00
58_G61_S0.6171.00
211_Y215_A0.6171.00
26_S64_I0.6171.00
85_V116_S0.6171.00
8_Q109_N0.6171.00
160_K174_T0.6161.00
186_E197_Y0.6151.00
42_A69_V0.6151.00
182_R185_I0.6141.00
31_T103_V0.6131.00
28_E66_N0.6101.00
185_I188_S0.6101.00
40_G73_H0.6091.00
143_S147_S0.6081.00
161_K164_K0.6011.00
68_E98_Q0.6011.00
17_T178_I0.6001.00
110_L114_A0.6001.00
7_N137_A0.5921.00
135_L139_K0.5901.00
134_A137_A0.5881.00
49_K53_K0.5881.00
154_S158_F0.5881.00
153_Y158_F0.5871.00
24_Y207_L0.5871.00
108_P137_A0.5871.00
70_F74_I0.5861.00
14_K37_D0.5831.00
63_N94_E0.5831.00
34_L92_I0.5831.00
90_N150_K0.5821.00
65_F68_E0.5811.00
159_S174_T0.5811.00
160_K163_V0.5801.00
24_Y204_K0.5791.00
8_Q108_P0.5781.00
132_P189_R0.5761.00
32_G95_I0.5761.00
118_M124_I0.5751.00
84_D113_L0.5741.00
21_L210_Y0.5741.00
72_A76_L0.5741.00
164_K207_L0.5711.00
185_I189_R0.5691.00
16_T20_N0.5691.00
23_Y65_F0.5661.00
148_I153_Y0.5661.00
93_K96_G0.5631.00
6_I124_I0.5621.00
88_I92_I0.5591.00
20_N207_L0.5591.00
38_P137_A0.5571.00
181_S206_K0.5561.00
140_N143_S0.5561.00
122_D155_F0.5551.00
70_F95_I0.5551.00
147_S150_K0.5521.00
149_G153_Y0.5521.00
17_T164_K0.5511.00
156_T159_S0.5511.00
78_K81_L0.5481.00
160_K180_P0.5481.00
129_T185_I0.5471.00
36_L113_L0.5451.00
34_L88_I0.5441.00
32_G68_E0.5431.00
141_L145_L0.5391.00
199_E205_P0.5361.00
4_T104_I0.5361.00
83_G87_E0.5361.00
90_N93_K0.5331.00
110_L144_R0.5301.00
17_T125_V0.5281.00
77_L80_E0.5261.00
187_A197_Y0.5261.00
156_T160_K0.5241.00
7_N126_S0.5211.00
26_S31_T0.5201.00
7_N14_K0.5181.00
86_E119_L0.5181.00
125_V214_L0.5151.00
89_S92_I0.5141.00
178_I210_Y0.5131.00
149_G157_N0.5101.00
72_A75_G0.5091.00
54_E60_K0.5061.00
8_Q141_L0.5061.00
20_N194_A0.5061.00
23_Y26_S0.5051.00
8_Q41_G0.5031.00
128_V138_I0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4pfsA 1 0.9227 100 0.257 Contact Map
3pg5A 2 0.8864 100 0.272 Contact Map
3ez2A 2 1 100 0.279 Contact Map
3kjhA 2 0.9773 100 0.281 Contact Map
3ez9A 2 0.8273 100 0.281 Contact Map
1wcv1 2 0.9818 100 0.289 Contact Map
4rz3A 2 0.9818 100 0.297 Contact Map
3ea0A 2 0.9727 100 0.303 Contact Map
1hyqA 1 0.9682 100 0.305 Contact Map
1g3qA 1 0.9818 100 0.306 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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