Q980Z5 - SULSO - GREMLIN Contacts

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Q980Z5 - Sun (Fmu) protein (Sun-2)

UniProt:	Q980Z5	Sequences: MKDIVKFLSTVLYYVEQKNYPLAIAFKRAYLHNKPRKIDSNLLYEYSKRLILSYYALPQSKRSAKVRYWLKNRENIEIKFPKWMEDKLFTLLDVNALKRKLTERWIWARINLLKTDIDKVYRMLESQNIEFEPDKDFYYMIKINRSSVRLSSLSIVKDFKLILHDKASSIVVEALKPEISEKLVDLSSAPGIKASLYMMLTENRAETFLADVDLKRLSKEYNLLKRCGVDLRKVHIIYQDSTKNSIIKSDKILLDAPCSSSGMINNDPSILLKLRNGEKIEKFTKLQKSLLNEALKIKSNKLVYAVCSLFPEEGEKVIEDYYEIAEKPFSNYQSGYSLFKSGKRSNRTFPHIDSTEGFFISTLNLTKL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	368 (298)
Sequences:	6256 (4623)
Seq/√Len:	267.8

ECOLI - RSMB RSMF
BACSU - RSMB
HALSA - Q9HRX7
SULSO - Q980Z5 Q980N8 Q980E2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
292_N	324_I	3.741	1.00
288_K	320_D	3.594	1.00
318_I	363_L	3.575	1.00
301_K	364_N	3.158	1.00
181_E	251_K	3.098	1.00
301_K	362_T	2.982	1.00
345_S	359_F	2.888	1.00
184_V	249_S	2.809	1.00
242_T	289_S	2.773	1.00
288_K	317_V	2.647	1.00
295_L	321_Y	2.607	1.00
250_D	298_K	2.576	1.00
87_K	312_E	2.481	1.00
328_P	366_T	2.454	1.00
116_D	119_K	2.435	1.00
91_L	311_P	2.339	1.00
206_E	235_H	2.305	1.00
186_L	294_A	2.262	1.00
224_L	234_V	2.165	1.00
208_F	249_S	2.156	1.00
254_L	290_L	2.150	1.00
121_Y	141_I	2.138	1.00
194_A	209_L	2.115	1.00
292_N	325_A	2.100	1.00
134_D	166_K	2.083	1.00
134_D	140_M	2.048	1.00
115_T	120_V	2.022	1.00
303_V	362_T	2.012	1.00
201_T	205_A	1.963	1.00
203_N	233_K	1.962	1.00
328_P	364_N	1.960	1.00
98_K	102_T	1.946	1.00
132_E	144_N	1.934	1.00
211_D	217_L	1.927	1.00
123_M	160_K	1.890	1.00
120_V	161_L	1.874	1.00
82_K	86_D	1.855	1.00
177_P	181_E	1.842	1.00
182_K	206_E	1.824	1.00
80_F	101_L	1.807	1.00
321_Y	325_A	1.801	1.00
261_S	308_S	1.797	1.00
315_E	347_R	1.766	1.00
114_K	228_G	1.765	1.00
154_S	158_D	1.732	1.00
284_T	317_V	1.727	1.00
178_E	181_E	1.719	1.00
320_D	324_I	1.704	1.00
261_S	310_F	1.683	1.00
87_K	310_F	1.668	1.00
172_V	196_L	1.664	1.00
195_S	227_C	1.657	1.00
121_Y	131_F	1.639	1.00
306_V	314_G	1.606	1.00
217_L	236_I	1.589	1.00
140_M	169_S	1.588	1.00
112_L	139_Y	1.588	1.00
217_L	238_Y	1.587	1.00
188_S	220_E	1.558	1.00
197_Y	253_L	1.511	1.00
316_K	319_E	1.511	1.00
329_F	361_S	1.509	1.00
108_A	161_L	1.509	1.00
167_A	355_T	1.505	1.00
174_A	360_I	1.468	1.00
107_W	142_K	1.429	1.00
291_L	321_Y	1.411	1.00
319_E	323_E	1.410	1.00
295_L	302_L	1.401	1.00
112_L	199_M	1.400	1.00
218_S	221_Y	1.392	1.00
194_A	207_T	1.380	1.00
115_T	160_K	1.377	1.00
291_L	302_L	1.363	1.00
127_Q	155_I	1.363	1.00
175_L	197_Y	1.356	1.00
117_I	133_P	1.352	1.00
198_M	229_V	1.350	1.00
311_P	316_K	1.348	1.00
80_F	100_K	1.338	1.00
88_L	310_F	1.329	1.00
175_L	251_K	1.327	1.00
296_K	325_A	1.327	1.00
72_N	82_K	1.324	1.00
92_L	349_F	1.316	1.00
318_I	322_Y	1.307	1.00
110_I	120_V	1.298	1.00
288_K	324_I	1.298	1.00
173_E	200_L	1.284	1.00
171_V	360_I	1.282	1.00
312_E	316_K	1.266	1.00
100_K	104_R	1.261	1.00
182_K	208_F	1.250	1.00
162_I	195_S	1.242	1.00
182_K	248_K	1.231	1.00
137_F	166_K	1.228	1.00
177_P	201_T	1.220	1.00
188_S	194_A	1.216	1.00
208_F	237_I	1.213	1.00
155_I	161_L	1.201	1.00
97_L	101_L	1.198	1.00
348_T	355_T	1.198	1.00
121_Y	133_P	1.197	1.00
96_A	351_H	1.194	1.00
285_K	289_S	1.189	1.00
281_E	312_E	1.185	1.00
293_E	296_K	1.181	1.00
329_F	345_S	1.177	1.00
182_K	249_S	1.172	1.00
132_E	142_K	1.170	1.00
288_K	292_N	1.160	1.00
167_A	348_T	1.151	1.00
97_L	100_K	1.144	1.00
130_E	144_N	1.139	1.00
251_K	301_K	1.132	1.00
229_V	234_V	1.128	1.00
176_K	301_K	1.120	1.00
239_Q	244_N	1.118	1.00
73_R	77_E	1.115	1.00
332_Y	336_Y	1.115	1.00
93_D	96_A	1.114	1.00
117_I	141_I	1.109	1.00
87_K	277_G	1.106	1.00
196_L	200_L	1.100	1.00
201_T	204_R	1.095	1.00
107_W	166_K	1.087	1.00
139_Y	173_E	1.084	1.00
345_S	361_S	1.081	1.00
122_R	125_E	1.072	1.00
210_A	237_I	1.068	1.00
331_N	335_G	1.064	1.00
131_F	141_I	1.064	1.00
176_K	251_K	1.059	1.00
188_S	209_L	1.059	1.00
276_N	279_K	1.055	1.00
177_P	183_L	1.049	1.00
114_K	160_K	1.046	1.00
179_I	204_R	1.043	1.00
108_A	143_I	1.042	1.00
186_L	241_S	1.040	1.00
259_S	283_F	1.030	1.00
138_Y	173_E	1.030	1.00
214_L	238_Y	1.025	1.00
322_Y	363_L	1.021	1.00
171_V	196_L	1.018	1.00
172_V	197_Y	1.018	1.00
332_Y	335_G	1.012	1.00
195_S	224_L	1.007	1.00
295_L	327_K	1.006	1.00
241_S	290_L	1.005	1.00
110_I	117_I	1.003	1.00
253_L	305_A	1.001	1.00
245_S	293_E	1.001	1.00
165_D	265_N	1.001	1.00
117_I	121_Y	1.000	1.00
97_L	104_R	0.995	1.00
195_S	223_L	0.992	1.00
311_P	315_E	0.992	1.00
140_M	166_K	0.981	1.00
74_E	85_E	0.973	1.00
136_D	166_K	0.963	1.00
99_R	103_E	0.958	1.00
177_P	197_Y	0.956	1.00
134_D	137_F	0.955	1.00
168_S	358_F	0.953	1.00
155_I	160_K	0.953	1.00
71_K	89_F	0.951	1.00
177_P	200_L	0.948	1.00
137_F	140_M	0.946	1.00
186_L	210_A	0.938	1.00
256_A	290_L	0.937	1.00
221_Y	225_K	0.934	1.00
280_I	284_T	0.929	1.00
242_T	290_L	0.927	1.00
97_L	102_T	0.926	1.00
179_I	202_E	0.925	1.00
284_T	288_K	0.923	1.00
274_L	279_K	0.920	1.00
197_Y	251_K	0.912	1.00
293_E	297_I	0.911	1.00
111_N	114_K	0.908	1.00
210_A	239_Q	0.908	1.00
162_I	199_M	0.907	1.00
264_I	270_I	0.904	1.00
187_S	254_L	0.903	1.00
69_W	72_N	0.902	1.00
279_K	282_K	0.900	1.00
295_L	325_A	0.886	1.00
86_D	90_T	0.886	1.00
113_L	229_V	0.882	1.00
85_E	98_K	0.880	1.00
186_L	254_L	0.872	1.00
244_N	297_I	0.872	1.00
171_V	305_A	0.871	1.00
75_N	82_K	0.869	1.00
89_F	94_V	0.869	1.00
282_K	286_L	0.867	1.00
99_R	102_T	0.866	1.00
269_S	273_K	0.859	1.00
286_L	289_S	0.859	1.00
330_S	364_N	0.858	1.00
194_A	234_V	0.855	1.00
175_L	303_V	0.854	1.00
84_M	261_S	0.854	1.00
171_V	303_V	0.851	1.00
162_I	223_L	0.849	1.00
221_Y	236_I	0.848	1.00
217_L	220_E	0.847	1.00
259_S	280_I	0.847	1.00
127_Q	154_S	0.844	1.00
183_L	201_T	0.843	1.00
184_V	210_A	0.842	1.00
183_L	205_A	0.841	1.00
78_I	85_E	0.840	1.00
254_L	294_A	0.839	0.99
183_L	251_K	0.839	0.99
84_M	310_F	0.839	0.99
100_K	103_E	0.836	0.99
263_M	267_D	0.834	0.99
181_E	301_K	0.834	0.99
331_N	336_Y	0.829	0.99
198_M	207_T	0.829	0.99
197_Y	207_T	0.827	0.99
292_N	320_D	0.822	0.99
245_S	297_I	0.820	0.99
336_Y	339_F	0.820	0.99
80_F	85_E	0.817	0.99
75_N	85_E	0.815	0.99
101_L	104_R	0.814	0.99
210_A	244_N	0.814	0.99
350_P	357_G	0.810	0.99
89_F	96_A	0.810	0.99
107_W	134_D	0.809	0.99
322_Y	327_K	0.809	0.99
175_L	253_L	0.807	0.99
246_I	296_K	0.805	0.99
194_A	224_L	0.803	0.99
303_V	360_I	0.802	0.99
83_W	277_G	0.801	0.99
284_T	312_E	0.801	0.99
165_D	266_N	0.800	0.99
252_I	294_A	0.800	0.99
70_L	73_R	0.799	0.99
215_K	219_K	0.798	0.99
334_S	338_L	0.795	0.99
121_Y	125_E	0.788	0.99
331_N	334_S	0.787	0.99
184_V	252_I	0.783	0.99
198_M	233_K	0.776	0.99
208_F	235_H	0.775	0.99
199_M	229_V	0.769	0.99
98_K	103_E	0.769	0.99
264_I	271_L	0.765	0.99
341_S	344_R	0.765	0.99
149_R	152_S	0.763	0.99
170_I	348_T	0.761	0.99
87_K	91_L	0.757	0.99
321_Y	327_K	0.756	0.99
215_K	218_S	0.756	0.99
282_K	285_K	0.755	0.99
288_K	321_Y	0.753	0.99
277_G	281_E	0.749	0.99
88_L	97_L	0.748	0.99
333_Q	337_S	0.747	0.99
315_E	319_E	0.744	0.99
184_V	297_I	0.743	0.99
222_N	225_K	0.742	0.99
76_I	79_K	0.741	0.99
186_L	252_I	0.738	0.99
320_D	323_E	0.738	0.99
80_F	98_K	0.736	0.99
219_K	222_N	0.736	0.99
117_I	140_M	0.732	0.99
333_Q	336_Y	0.728	0.99
122_R	126_S	0.728	0.99
330_S	362_T	0.725	0.99
302_L	321_Y	0.722	0.98
176_K	200_L	0.719	0.98
118_D	122_R	0.719	0.98
84_M	88_L	0.719	0.98
129_I	153_L	0.714	0.98
73_R	76_I	0.714	0.98
252_I	302_L	0.713	0.98
113_L	203_N	0.712	0.98
108_A	141_I	0.711	0.98
295_L	365_L	0.709	0.98
166_K	355_T	0.709	0.98
244_N	293_E	0.707	0.98
154_S	157_K	0.704	0.98
115_T	123_M	0.704	0.98
176_K	181_E	0.702	0.98
162_I	227_C	0.701	0.98
186_L	290_L	0.699	0.98
96_A	352_I	0.694	0.98
278_E	282_K	0.693	0.98
331_N	337_S	0.693	0.98
70_L	94_V	0.690	0.98
139_Y	196_L	0.688	0.98
119_K	123_M	0.686	0.98
98_K	101_L	0.684	0.98
319_E	345_S	0.683	0.98
86_D	89_F	0.682	0.98
137_F	173_E	0.680	0.98
236_I	239_Q	0.679	0.98
315_E	345_S	0.678	0.98
204_R	233_K	0.676	0.98
322_Y	325_A	0.675	0.98
348_T	353_D	0.671	0.98
133_P	141_I	0.670	0.98
134_D	142_K	0.665	0.97
222_N	226_R	0.664	0.97
109_R	195_S	0.662	0.97
330_S	334_S	0.659	0.97
183_L	197_Y	0.658	0.97
120_V	123_M	0.657	0.97
284_T	310_F	0.656	0.97
182_K	298_K	0.656	0.97
110_I	141_I	0.654	0.97
327_K	366_T	0.654	0.97
224_L	227_C	0.654	0.97
224_L	236_I	0.653	0.97
340_K	345_S	0.653	0.97
207_T	229_V	0.652	0.97
291_L	320_D	0.650	0.97
115_T	119_K	0.649	0.97
84_M	264_I	0.647	0.97
89_F	93_D	0.646	0.97
203_N	230_D	0.646	0.97
139_Y	200_L	0.645	0.97
309_L	357_G	0.644	0.97
346_N	360_I	0.644	0.97
322_Y	326_E	0.643	0.97
199_M	227_C	0.642	0.97
266_N	356_E	0.641	0.97
242_T	286_L	0.640	0.97
218_S	222_N	0.638	0.97
230_D	233_K	0.637	0.97
317_V	320_D	0.636	0.97
248_K	298_K	0.636	0.97
314_G	347_R	0.635	0.97
341_S	345_S	0.635	0.97
197_Y	205_A	0.634	0.97
156_V	159_F	0.633	0.97
119_K	122_R	0.631	0.96
331_N	338_L	0.630	0.96
118_D	133_P	0.629	0.96
174_A	362_T	0.626	0.96
105_W	142_K	0.626	0.96
334_S	337_S	0.625	0.96
211_D	270_I	0.624	0.96
281_E	284_T	0.623	0.96
267_D	273_K	0.622	0.96
340_K	343_K	0.621	0.96
170_I	346_N	0.621	0.96
322_Y	329_F	0.619	0.96
91_L	312_E	0.617	0.96
180_S	204_R	0.616	0.96
239_Q	243_K	0.615	0.96
165_D	356_E	0.612	0.96
159_F	226_R	0.610	0.96
120_V	155_I	0.609	0.96
172_V	200_L	0.609	0.96
351_H	355_T	0.609	0.96
190_P	216_R	0.609	0.96
211_D	220_E	0.607	0.96
332_Y	337_S	0.606	0.96
334_S	339_F	0.605	0.96
117_I	120_V	0.604	0.95
287_Q	304_Y	0.604	0.95
123_M	127_Q	0.603	0.95
127_Q	153_L	0.603	0.95
107_W	140_M	0.603	0.95
179_I	201_T	0.602	0.95
109_R	199_M	0.601	0.95
118_D	121_Y	0.600	0.95
294_A	302_L	0.598	0.95
74_E	89_F	0.593	0.95
181_E	201_T	0.592	0.95
239_Q	245_S	0.590	0.95
88_L	93_D	0.587	0.95
347_R	350_P	0.586	0.95
113_L	204_R	0.584	0.95
202_E	205_A	0.583	0.95
280_I	310_F	0.580	0.94
79_K	272_L	0.580	0.94
333_Q	338_L	0.577	0.94
177_P	251_K	0.576	0.94
178_E	251_K	0.575	0.94
254_L	291_L	0.570	0.94
241_S	244_N	0.570	0.94
125_E	130_E	0.569	0.94
69_W	73_R	0.566	0.94
125_E	131_F	0.566	0.94
242_T	293_E	0.566	0.94
181_E	250_D	0.566	0.94
167_A	171_V	0.563	0.93
261_S	264_I	0.563	0.93
130_E	145_R	0.563	0.93
348_T	352_I	0.562	0.93
220_E	236_I	0.562	0.93
330_S	333_Q	0.562	0.93
85_E	89_F	0.561	0.93
281_E	285_K	0.559	0.93
246_I	249_S	0.558	0.93
240_D	245_S	0.555	0.93
292_N	296_K	0.553	0.93
184_V	208_F	0.552	0.93
344_R	359_F	0.552	0.93
316_K	320_D	0.551	0.93
135_K	166_K	0.550	0.93
335_G	339_F	0.550	0.93
335_G	338_L	0.547	0.93
123_M	155_I	0.547	0.93
344_R	348_T	0.546	0.92
210_A	241_S	0.544	0.92
80_F	102_T	0.544	0.92
223_L	226_R	0.541	0.92
123_M	126_S	0.541	0.92
113_L	199_M	0.540	0.92
87_K	90_T	0.538	0.92
109_R	164_H	0.538	0.92
142_K	354_S	0.536	0.92
120_V	124_L	0.529	0.91
261_S	280_I	0.528	0.91
292_N	321_Y	0.528	0.91
190_P	220_E	0.524	0.91
211_D	224_L	0.519	0.90
174_A	177_P	0.517	0.90
309_L	347_R	0.514	0.90
295_L	363_L	0.514	0.90
333_Q	339_F	0.513	0.90
284_T	320_D	0.513	0.90
320_D	325_A	0.512	0.90
279_K	283_F	0.510	0.90
332_Y	339_F	0.509	0.90
174_A	346_N	0.508	0.90
68_Y	72_N	0.507	0.89
210_A	238_Y	0.507	0.89
68_Y	73_R	0.505	0.89
201_T	207_T	0.505	0.89
189_A	223_L	0.505	0.89
214_L	218_S	0.505	0.89
117_I	139_Y	0.505	0.89
318_I	361_S	0.504	0.89
283_F	286_L	0.503	0.89
173_E	196_L	0.502	0.89
249_S	252_I	0.500	0.89

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2yxlA	1	0.9565	100	0.288	Contact Map
1sqgA	1	0.9375	100	0.309	Contact Map
2frxA	1	0.7554	100	0.385	Contact Map
1ixkA	1	0.7853	100	0.4	Contact Map
3m4xA	1	0.7554	100	0.419	Contact Map
3m6wA	2	0.7663	100	0.428	Contact Map
2b9eA	1	0.663	100	0.431	Contact Map
3ajdA	1	0.6522	100	0.508	Contact Map
4fzvA	1	0.7853	100	0.541	Contact Map
2vdvE	2	0.5109	99.8	0.797	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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