Q980Z0 - SULSO - GREMLIN Contacts

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Q980Z0 - Iron (III) ABC transporter, periplasmic-binding protein, putative

UniProt:	Q980Z0	Sequences: MSVRVYNPLQDDYIKIQRPITKIVSLDPASTEIIFLLGLGEKVKATDAFSYRPEDARRTLKIGSYTHVNVDILKQINPDIIFTTAGAQKELTRKLIGLGFNVYPLPVPTNIASILNNVLLIGNVLGVYEKARELYYSLYNVIDGLRARCYKKKIKVYIELDLGGPITVGFPTHISDGISLLGSTNIFDDISEAYFTPKDEEILKRDPDIIIYEPKRLTDYEKERFYSILRKRDLFQLLNKRLIFTKGDYLAHMGPSFITDVLIWLKSVLFSQP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	273 (249)
Sequences:	15068 (11841)
Seq/√Len:	750.4

ECOLI - FECB FHUD BTUF FEPB
BACSU - YVRC YFIY YCLQ YHFQ YFMC YXEB FEUA FHUD BTR
HALSA - BTUFA Q9HMG8 Q9HMF9 Q9HPB0 Q9HSB2
SULSO - Q980Z0 Q97ZU2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
115_L	139_Y	4.036	1.00
122_G	131_A	3.929	1.00
206_D	235_F	3.929	1.00
119_L	132_R	3.867	1.00
141_V	263_I	3.517	1.00
127_V	130_K	3.401	1.00
123_N	128_Y	2.985	1.00
25_S	31_T	2.898	1.00
235_F	239_N	2.889	1.00
119_L	135_Y	2.692	1.00
143_D	147_A	2.581	1.00
130_K	133_E	2.575	1.00
178_I	183_S	2.475	1.00
72_I	75_Q	2.458	1.00
136_Y	140_N	2.456	1.00
132_R	136_Y	2.400	1.00
201_E	204_K	2.342	1.00
155_K	184_T	2.243	1.00
175_S	179_S	2.160	1.00
24_V	73_L	2.149	1.00
141_V	259_T	2.057	1.00
23_I	125_L	2.043	1.00
223_E	227_S	1.978	1.00
133_E	137_S	1.968	1.00
139_Y	143_D	1.956	1.00
94_K	97_G	1.932	1.00
39_L	127_V	1.919	1.00
33_I	118_V	1.918	1.00
39_L	125_L	1.911	1.00
34_I	125_L	1.896	1.00
144_G	148_R	1.889	1.00
140_N	144_G	1.885	1.00
226_Y	240_K	1.836	1.00
208_D	235_F	1.823	1.00
82_F	121_I	1.815	1.00
209_I	243_I	1.777	1.00
22_K	44_K	1.776	1.00
92_T	96_I	1.756	1.00
113_S	116_N	1.736	1.00
129_E	133_E	1.712	1.00
209_I	241_R	1.695	1.00
234_L	237_L	1.684	1.00
143_D	146_R	1.641	1.00
222_K	226_Y	1.620	1.00
93_R	97_G	1.585	1.00
137_S	141_V	1.573	1.00
89_K	93_R	1.564	1.00
153_K	184_T	1.508	1.00
130_K	134_L	1.494	1.00
60_L	72_I	1.482	1.00
103_Y	124_V	1.480	1.00
69_N	72_I	1.475	1.00
235_F	238_L	1.473	1.00
68_V	73_L	1.469	1.00
116_N	119_L	1.464	1.00
233_D	238_L	1.461	1.00
243_I	268_V	1.451	1.00
116_N	120_L	1.449	1.00
93_R	96_I	1.437	1.00
74_K	98_L	1.433	1.00
47_D	50_S	1.426	1.00
115_L	135_Y	1.421	1.00
103_Y	120_L	1.418	1.00
145_L	262_L	1.409	1.00
147_A	150_Y	1.389	1.00
24_V	76_I	1.380	1.00
223_E	226_Y	1.373	1.00
88_Q	91_L	1.356	1.00
45_A	76_I	1.349	1.00
128_Y	132_R	1.339	1.00
35_F	56_A	1.325	1.00
142_I	262_L	1.317	1.00
199_D	228_I	1.308	1.00
37_L	127_V	1.307	1.00
44_K	76_I	1.301	1.00
136_Y	139_Y	1.297	1.00
25_S	34_I	1.297	1.00
129_E	132_R	1.294	1.00
145_L	266_K	1.291	1.00
210_I	236_Q	1.282	1.00
156_V	183_S	1.278	1.00
34_I	39_L	1.276	1.00
120_L	123_N	1.276	1.00
231_K	237_L	1.257	1.00
264_W	267_S	1.252	1.00
119_L	139_Y	1.235	1.00
20_I	79_D	1.228	1.00
140_N	143_D	1.227	1.00
70_V	94_K	1.219	1.00
118_V	131_A	1.213	1.00
83_T	104_P	1.208	1.00
71_D	200_E	1.204	1.00
16_I	19_P	1.204	1.00
201_E	205_R	1.197	1.00
155_K	208_D	1.196	1.00
141_V	144_G	1.195	1.00
134_L	137_S	1.194	1.00
164_G	196_T	1.191	1.00
144_G	147_A	1.191	1.00
24_V	45_A	1.191	1.00
186_I	205_R	1.185	1.00
35_F	40_G	1.166	1.00
156_V	178_I	1.152	1.00
21_T	79_D	1.144	1.00
220_Y	223_E	1.133	1.00
146_R	180_L	1.131	1.00
22_K	77_N	1.125	1.00
187_F	205_R	1.117	1.00
154_I	209_I	1.110	1.00
135_Y	139_Y	1.102	1.00
170_F	179_S	1.098	1.00
148_R	266_K	1.096	1.00
159_E	228_I	1.086	1.00
54_E	57_R	1.083	1.00
137_S	140_N	1.074	1.00
34_I	82_F	1.071	1.00
221_E	224_R	1.071	1.00
46_T	61_K	1.067	1.00
146_R	150_Y	1.059	1.00
224_R	227_S	1.046	1.00
184_T	188_D	1.039	1.00
263_I	267_S	1.035	1.00
23_I	80_I	1.019	1.00
154_I	241_R	1.016	1.00
80_I	103_Y	1.014	1.00
105_L	120_L	1.009	1.00
142_I	146_R	1.002	1.00
36_L	134_L	1.000	1.00
157_Y	167_T	0.986	1.00
32_E	256_S	0.970	1.00
220_Y	224_R	0.970	1.00
151_K	154_I	0.964	1.00
231_K	234_L	0.963	1.00
81_I	99_G	0.956	1.00
19_P	127_V	0.955	1.00
119_L	123_N	0.952	1.00
131_A	135_Y	0.952	1.00
122_G	135_Y	0.951	1.00
16_I	101_N	0.942	1.00
120_L	124_V	0.940	1.00
138_L	180_L	0.937	1.00
121_I	125_L	0.937	1.00
211_I	265_L	0.936	1.00
91_L	94_K	0.935	1.00
212_Y	244_F	0.930	1.00
176_D	179_S	0.928	1.00
176_D	180_L	0.926	1.00
141_V	145_L	0.925	1.00
117_N	120_L	0.921	1.00
109_T	112_A	0.920	1.00
37_L	134_L	0.920	1.00
149_C	266_K	0.916	1.00
46_T	59_T	0.916	1.00
246_K	264_W	0.914	1.00
248_D	252_H	0.909	1.00
110_N	113_S	0.883	1.00
78_P	81_I	0.882	1.00
158_I	178_I	0.878	1.00
187_F	190_I	0.875	1.00
18_R	21_T	0.871	1.00
144_G	263_I	0.859	1.00
38_G	41_E	0.857	1.00
20_I	80_I	0.854	1.00
33_I	121_I	0.853	1.00
138_L	142_I	0.851	1.00
229_L	232_R	0.850	1.00
16_I	20_I	0.846	1.00
101_N	104_P	0.838	1.00
141_V	266_K	0.838	1.00
30_S	82_F	0.834	1.00
167_T	187_F	0.827	1.00
237_L	242_L	0.824	1.00
27_D	84_T	0.820	1.00
23_I	34_I	0.820	1.00
189_D	205_R	0.815	1.00
187_F	201_E	0.813	1.00
154_I	183_S	0.813	1.00
133_E	136_Y	0.811	1.00
32_E	254_G	0.803	1.00
157_Y	207_P	0.801	1.00
235_F	241_R	0.800	1.00
19_P	126_G	0.798	1.00
82_F	124_V	0.797	1.00
37_L	125_L	0.794	1.00
26_L	81_I	0.788	1.00
232_R	237_L	0.787	1.00
158_I	213_E	0.786	1.00
198_K	201_E	0.784	1.00
157_Y	160_L	0.784	1.00
177_G	262_L	0.782	1.00
203_L	207_P	0.781	1.00
226_Y	242_L	0.774	1.00
119_L	122_G	0.772	1.00
212_Y	242_L	0.765	1.00
40_G	58_R	0.760	1.00
249_Y	264_W	0.754	1.00
35_F	55_D	0.753	1.00
211_I	243_I	0.753	1.00
168_V	194_Y	0.752	1.00
134_L	138_L	0.752	1.00
38_G	127_V	0.750	1.00
112_A	116_N	0.745	1.00
125_L	128_Y	0.745	1.00
115_L	119_L	0.745	1.00
48_A	61_K	0.744	1.00
256_S	259_T	0.738	1.00
37_L	130_K	0.734	1.00
172_T	175_S	0.733	1.00
114_I	138_L	0.728	1.00
112_A	115_L	0.728	1.00
132_R	135_Y	0.724	1.00
121_I	124_V	0.723	1.00
225_F	228_I	0.722	1.00
145_L	149_C	0.720	1.00
62_I	76_I	0.719	1.00
81_I	98_L	0.715	1.00
90_E	93_R	0.714	1.00
105_L	121_I	0.713	1.00
96_I	102_V	0.712	1.00
161_D	164_G	0.711	1.00
197_P	205_R	0.695	1.00
118_V	134_L	0.692	1.00
202_I	234_L	0.690	1.00
22_K	79_D	0.688	1.00
249_Y	252_H	0.684	1.00
37_L	122_G	0.683	1.00
155_K	186_I	0.681	1.00
142_I	180_L	0.679	1.00
105_L	117_N	0.678	1.00
264_W	268_V	0.678	1.00
14_I	92_T	0.677	1.00
38_G	130_K	0.676	1.00
171_P	175_S	0.672	1.00
228_I	232_R	0.670	1.00
156_V	159_E	0.665	1.00
115_L	142_I	0.665	1.00
30_S	105_L	0.664	1.00
183_S	209_I	0.659	1.00
228_I	231_K	0.659	1.00
81_I	102_V	0.658	1.00
36_L	256_S	0.657	1.00
169_G	175_S	0.657	1.00
203_L	233_D	0.656	1.00
115_L	138_L	0.656	1.00
60_L	63_G	0.655	1.00
259_T	263_I	0.652	1.00
73_L	95_L	0.651	1.00
181_L	262_L	0.650	1.00
34_I	121_I	0.649	1.00
215_K	247_G	0.649	1.00
156_V	160_L	0.649	1.00
36_L	118_V	0.648	1.00
119_L	128_Y	0.647	1.00
37_L	118_V	0.647	1.00
185_N	188_D	0.644	1.00
222_K	244_F	0.639	1.00
102_V	105_L	0.639	1.00
142_I	145_L	0.637	1.00
24_V	78_P	0.637	1.00
258_I	261_V	0.637	1.00
30_S	121_I	0.633	1.00
87_A	91_L	0.630	1.00
45_A	63_G	0.630	1.00
159_E	210_I	0.630	1.00
64_S	67_H	0.629	1.00
80_I	124_V	0.627	1.00
168_V	172_T	0.627	1.00
170_F	190_I	0.626	1.00
52_R	256_S	0.626	1.00
25_S	30_S	0.623	1.00
83_T	92_T	0.622	1.00
114_I	118_V	0.620	1.00
71_D	74_K	0.615	1.00
203_L	234_L	0.611	1.00
14_I	103_Y	0.610	1.00
175_S	185_N	0.609	1.00
101_N	105_L	0.608	1.00
70_V	98_L	0.603	1.00
170_F	188_D	0.601	1.00
16_I	80_I	0.598	1.00
89_K	92_T	0.596	1.00
138_L	258_I	0.596	1.00
40_G	55_D	0.596	1.00
135_Y	138_L	0.595	1.00
168_V	174_I	0.595	1.00
187_F	197_P	0.593	1.00
157_Y	202_I	0.593	1.00
213_E	245_T	0.588	1.00
81_I	95_L	0.588	1.00
115_L	180_L	0.588	1.00
109_T	113_S	0.588	1.00
37_L	131_A	0.587	1.00
114_I	257_F	0.587	1.00
181_L	266_K	0.583	1.00
146_R	149_C	0.581	1.00
185_N	189_D	0.577	1.00
146_R	181_L	0.572	1.00
207_P	210_I	0.572	1.00
175_S	188_D	0.565	1.00
70_V	73_L	0.563	1.00
95_L	102_V	0.563	1.00
72_I	76_I	0.562	1.00
154_I	208_D	0.561	1.00
95_L	98_L	0.560	1.00
118_V	135_Y	0.559	1.00
168_V	175_S	0.558	1.00
63_G	68_V	0.557	1.00
167_T	197_P	0.556	1.00
40_G	59_T	0.556	1.00
145_L	258_I	0.556	1.00
59_T	62_I	0.553	1.00
14_I	96_I	0.552	1.00
154_I	158_I	0.552	1.00
253_M	261_V	0.550	1.00
17_Q	101_N	0.550	1.00
15_K	18_R	0.549	1.00
16_I	124_V	0.549	1.00
210_I	231_K	0.549	1.00
152_K	155_K	0.548	1.00
82_F	103_Y	0.546	1.00
153_K	157_Y	0.545	1.00
25_S	46_T	0.545	1.00
134_L	255_P	0.545	1.00
211_I	268_V	0.543	1.00
145_L	148_R	0.543	1.00
31_T	46_T	0.542	1.00
246_K	249_Y	0.541	1.00
138_L	141_V	0.541	1.00
263_I	266_K	0.540	1.00
186_I	189_D	0.539	1.00
158_I	174_I	0.538	1.00
85_A	88_Q	0.538	1.00
14_I	17_Q	0.537	1.00
170_F	175_S	0.537	1.00
155_K	159_E	0.536	1.00
221_E	225_F	0.535	1.00
222_K	225_F	0.535	1.00
52_R	56_A	0.532	1.00
254_G	257_F	0.531	1.00
177_G	265_L	0.531	1.00
214_P	244_F	0.531	1.00
68_V	91_L	0.531	1.00
199_D	231_K	0.530	1.00
30_S	33_I	0.529	1.00
155_K	183_S	0.529	1.00
48_A	51_Y	0.528	1.00
171_P	191_S	0.528	1.00
178_I	181_L	0.524	1.00
234_L	238_L	0.523	1.00
209_I	213_E	0.523	1.00
108_P	113_S	0.522	1.00
177_G	257_F	0.522	1.00
173_H	176_D	0.522	1.00
221_E	226_Y	0.520	1.00
112_A	139_Y	0.519	1.00
206_D	236_Q	0.515	1.00
92_T	104_P	0.515	1.00
203_L	230_R	0.515	1.00
20_I	125_L	0.514	1.00
139_Y	142_I	0.513	1.00
71_D	75_Q	0.512	1.00
153_K	156_V	0.511	1.00
96_I	101_N	0.511	1.00
74_K	200_E	0.511	1.00
179_S	188_D	0.510	1.00
26_L	68_V	0.510	1.00
70_V	91_L	0.510	1.00
166_I	196_T	0.509	1.00
262_L	266_K	0.508	1.00
94_K	98_L	0.506	1.00
231_K	242_L	0.506	1.00
111_I	114_I	0.503	1.00
35_F	59_T	0.501	1.00
24_V	81_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4hn9A	1	0.9817	100	0.154	Contact Map
4m7oA	1	0.9194	100	0.16	Contact Map
3pshA	1	0.978	100	0.162	Contact Map
4pagA	2	0.9707	100	0.169	Contact Map
4ovkA	1	0.9817	100	0.172	Contact Map
4mlzA	1	0.978	100	0.187	Contact Map
4n01A	1	0.9853	100	0.197	Contact Map
4ljsA	1	0.978	100	0.198	Contact Map
4mo9A	1	0.9817	100	0.207	Contact Map
3tefA	1	0.9597	100	0.21	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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