Q980Y8 - SULSO - GREMLIN Contacts

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Q980Y8 - Uncharacterized protein

UniProt:	Q980Y8	Sequences: MIVIYYIQIFLSIIMLIHTSILDLKYREVDPKIWIYYSPLCLFIIFSFHNLFLPIYLYSFIITNLLFLILYKLSLLGGADLFLNVILSLANASVISLVPSRFLVIGLEPLVIVLYSSIIILIFSLINFVKQYKYVRNLPFSKKILLALSAKRIKIRDFINSKFLFPLTEVKEDGSIMLRDYFSVEEDDKYWRELYSKLVNEGKISADTYIWVAWGIPVIPFMLAGYIMSLIIGFPI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	236 (215)
Sequences:	132 (115)
Seq/√Len:	7.9

SULSO - Q980Y8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
128_F	148_L	4.576	0.99
79_A	83_L	4.056	0.97
20_S	223_L	3.140	0.89
34_W	79_A	3.137	0.89
23_D	27_R	3.067	0.88
28_E	31_P	3.006	0.87
139_P	213_A	2.541	0.76
21_I	25_K	2.427	0.72
66_L	110_L	2.404	0.72
152_R	213_A	2.377	0.71
16_L	226_Y	2.232	0.66
118_I	154_K	2.060	0.59
21_I	125_L	2.051	0.59
39_P	125_L	2.050	0.59
150_A	211_W	2.048	0.59
27_R	34_W	2.041	0.58
34_W	131_Q	2.032	0.58
20_S	219_I	1.991	0.56
126_I	130_K	1.899	0.53
22_L	29_V	1.858	0.51
124_S	221_F	1.856	0.51
35_I	70_L	1.831	0.50
114_L	163_F	1.787	0.48
108_E	166_P	1.787	0.48
28_E	68_L	1.782	0.48
79_A	118_I	1.711	0.45
164_L	212_V	1.683	0.44
43_F	126_I	1.669	0.43
76_L	81_L	1.667	0.43
115_Y	166_P	1.650	0.43
108_E	214_W	1.647	0.43
111_V	125_L	1.638	0.42
22_L	30_D	1.635	0.42
91_N	167_L	1.615	0.41
32_K	197_K	1.544	0.39
87_L	116_S	1.543	0.39
167_L	197_K	1.536	0.38
87_L	212_V	1.531	0.38
18_H	22_L	1.507	0.37
93_S	118_I	1.491	0.37
33_I	149_S	1.477	0.36
104_V	112_I	1.474	0.36
200_N	203_K	1.472	0.36
29_V	219_I	1.430	0.34
150_A	213_A	1.413	0.34
79_A	131_Q	1.412	0.34
59_S	188_D	1.408	0.33
16_L	213_A	1.405	0.33
84_N	125_L	1.396	0.33
28_E	127_N	1.394	0.33
82_F	115_Y	1.377	0.32
122_I	167_L	1.375	0.32
11_L	26_Y	1.363	0.32
119_I	139_P	1.348	0.31
24_L	58_Y	1.346	0.31
174_G	222_M	1.334	0.31
118_I	162_K	1.333	0.31
115_Y	124_S	1.326	0.31
78_G	115_Y	1.323	0.30
128_F	152_R	1.323	0.30
217_P	233_G	1.323	0.30
14_I	163_F	1.320	0.30
34_W	83_L	1.317	0.30
34_W	78_G	1.316	0.30
30_D	35_I	1.304	0.30
45_I	121_L	1.295	0.29
80_D	217_P	1.293	0.29
82_F	218_V	1.292	0.29
105_I	194_L	1.269	0.29
41_C	206_A	1.264	0.28
23_D	29_V	1.263	0.28
87_L	112_I	1.254	0.28
211_W	219_I	1.250	0.28
39_P	87_L	1.245	0.28
201_E	204_I	1.237	0.28
64_N	84_N	1.233	0.27
151_K	226_Y	1.231	0.27
10_F	145_L	1.222	0.27
16_L	27_R	1.217	0.27
111_V	223_L	1.216	0.27
126_I	232_I	1.207	0.27
77_G	80_D	1.206	0.27
17_I	21_I	1.202	0.26
69_I	204_I	1.195	0.26
15_M	226_Y	1.195	0.26
150_A	167_L	1.189	0.26
113_V	220_P	1.182	0.26
83_L	174_G	1.175	0.26
23_D	80_D	1.165	0.25
64_N	232_I	1.165	0.25
45_I	58_Y	1.141	0.25
155_I	208_T	1.128	0.24
42_L	56_Y	1.125	0.24
200_N	208_T	1.122	0.24
17_I	37_Y	1.118	0.24
166_P	214_W	1.114	0.24
30_D	33_I	1.104	0.23
14_I	183_S	1.101	0.23
158_F	210_I	1.095	0.23
110_L	212_V	1.090	0.23
41_C	202_G	1.089	0.23
33_I	152_R	1.088	0.23
16_L	233_G	1.077	0.23
152_R	214_W	1.077	0.23
62_I	84_N	1.071	0.23
155_I	210_I	1.069	0.22
36_Y	164_L	1.067	0.22
15_M	37_Y	1.067	0.22
110_L	225_G	1.058	0.22
94_V	168_T	1.047	0.22
59_S	101_R	1.043	0.22
60_F	79_A	1.040	0.22
116_S	218_V	1.036	0.22
94_V	101_R	1.036	0.22
40_L	167_L	1.033	0.21
82_F	108_E	1.028	0.21
81_L	168_T	1.015	0.21
111_V	118_I	1.006	0.21
17_I	128_F	1.001	0.21
108_E	124_S	0.999	0.21
108_E	218_V	0.997	0.20
90_A	108_E	0.992	0.20
164_L	215_G	0.981	0.20
10_F	14_I	0.981	0.20
114_L	117_S	0.962	0.20
17_I	110_L	0.961	0.20
61_I	129_V	0.959	0.20
108_E	131_Q	0.957	0.19
73_L	112_I	0.955	0.19
36_Y	79_A	0.953	0.19
87_L	193_E	0.949	0.19
102_F	157_D	0.943	0.19
89_L	228_M	0.937	0.19
58_Y	206_A	0.928	0.19
84_N	149_S	0.927	0.19
18_H	37_Y	0.927	0.19
153_I	225_G	0.922	0.19
149_S	227_I	0.920	0.19
76_L	163_F	0.906	0.18
66_L	222_M	0.904	0.18
117_S	149_S	0.903	0.18
57_L	132_Y	0.902	0.18
90_A	167_L	0.901	0.18
71_Y	219_I	0.892	0.18
116_S	128_F	0.890	0.18
217_P	225_G	0.881	0.18
29_V	78_G	0.881	0.18
29_V	86_I	0.877	0.17
82_F	165_F	0.877	0.17
113_V	168_T	0.874	0.17
31_P	82_F	0.873	0.17
17_I	223_L	0.871	0.17
89_L	151_K	0.871	0.17
210_I	229_S	0.871	0.17
111_V	115_Y	0.870	0.17
115_Y	131_Q	0.870	0.17
78_G	152_R	0.868	0.17
41_C	82_F	0.860	0.17
188_D	212_V	0.851	0.17
48_F	156_R	0.849	0.17
61_I	231_I	0.847	0.17
20_S	109_P	0.841	0.17
53_L	231_I	0.828	0.16
111_V	160_N	0.827	0.16
16_L	20_S	0.822	0.16
17_I	20_S	0.821	0.16
117_S	139_P	0.813	0.16
48_F	118_I	0.810	0.16
57_L	60_F	0.807	0.16
151_K	222_M	0.806	0.16
139_P	152_R	0.806	0.16
111_V	172_E	0.804	0.16
14_I	156_R	0.803	0.16
48_F	73_L	0.801	0.16
99_P	224_A	0.796	0.16
93_S	226_Y	0.793	0.16
11_L	79_A	0.793	0.16
123_F	151_K	0.791	0.16
91_N	218_V	0.789	0.16
165_F	232_I	0.787	0.15
102_F	203_K	0.784	0.15
210_I	218_V	0.779	0.15
29_V	145_L	0.779	0.15
33_I	148_L	0.778	0.15
35_I	121_L	0.778	0.15
74_S	81_L	0.776	0.15
12_S	158_F	0.772	0.15
102_F	193_E	0.765	0.15
27_R	77_G	0.760	0.15
35_I	212_V	0.760	0.15
125_L	224_A	0.759	0.15
17_I	73_L	0.756	0.15
101_R	110_L	0.755	0.15
132_Y	183_S	0.743	0.15
78_G	82_F	0.736	0.14
77_G	217_P	0.730	0.14
85_V	181_Y	0.726	0.14
38_S	86_I	0.725	0.14
82_F	86_I	0.725	0.14
33_I	74_S	0.724	0.14
74_S	232_I	0.722	0.14
57_L	227_I	0.720	0.14
61_I	89_L	0.717	0.14
114_L	219_I	0.714	0.14
80_D	92_A	0.711	0.14
37_Y	108_E	0.708	0.14
34_W	76_L	0.707	0.14
81_L	214_W	0.707	0.14
127_N	145_L	0.700	0.14
70_L	73_L	0.695	0.14
128_F	189_K	0.695	0.14
16_L	23_D	0.695	0.14
163_F	170_V	0.691	0.14
149_S	157_D	0.690	0.14
158_F	228_M	0.685	0.13
167_L	223_L	0.682	0.13
127_N	221_F	0.680	0.13
76_L	79_A	0.676	0.13
73_L	89_L	0.676	0.13
33_I	88_S	0.669	0.13
24_L	61_I	0.665	0.13
26_Y	120_I	0.663	0.13
115_Y	225_G	0.662	0.13
41_C	124_S	0.661	0.13
11_L	156_R	0.658	0.13
109_P	227_I	0.656	0.13
56_Y	66_L	0.655	0.13
78_G	131_Q	0.655	0.13
23_D	217_P	0.655	0.13
66_L	137_N	0.654	0.13
130_K	151_K	0.653	0.13
16_L	83_L	0.652	0.13
36_Y	152_R	0.649	0.13
133_K	177_M	0.643	0.13
10_F	75_L	0.642	0.13
166_P	191_W	0.641	0.13
16_L	215_G	0.638	0.13
53_L	204_I	0.630	0.12
61_I	196_S	0.627	0.12
72_K	85_V	0.626	0.12
17_I	116_S	0.623	0.12
15_M	230_L	0.623	0.12
27_R	80_D	0.621	0.12
59_S	62_I	0.621	0.12
44_I	110_L	0.620	0.12
19_T	23_D	0.620	0.12
89_L	168_T	0.618	0.12
57_L	88_S	0.618	0.12
118_I	231_I	0.617	0.12
134_Y	162_K	0.615	0.12
53_L	219_I	0.612	0.12
13_I	208_T	0.611	0.12
161_S	213_A	0.610	0.12
65_L	71_Y	0.607	0.12
91_N	195_Y	0.606	0.12
65_L	186_E	0.604	0.12
121_L	148_L	0.602	0.12
19_T	54_P	0.601	0.12
85_V	154_K	0.600	0.12
20_S	220_P	0.597	0.12
108_E	195_Y	0.594	0.12
28_E	78_G	0.593	0.12
78_G	125_L	0.592	0.12
23_D	77_G	0.582	0.12
114_L	196_S	0.581	0.12
62_I	185_E	0.579	0.12
25_K	208_T	0.579	0.12
75_L	165_F	0.579	0.12
68_L	106_G	0.578	0.12
25_K	206_A	0.578	0.12
139_P	207_D	0.578	0.12
118_I	226_Y	0.578	0.12
19_T	219_I	0.575	0.11
26_Y	46_F	0.574	0.11
59_S	120_I	0.574	0.11
87_L	163_F	0.572	0.11
22_L	28_E	0.571	0.11
164_L	192_R	0.571	0.11
214_W	221_F	0.569	0.11
62_I	160_N	0.569	0.11
40_L	79_A	0.564	0.11
59_S	185_E	0.564	0.11
68_L	137_N	0.563	0.11
28_E	76_L	0.562	0.11
76_L	144_I	0.562	0.11
36_Y	42_L	0.560	0.11
129_V	230_L	0.560	0.11
91_N	132_Y	0.559	0.11
70_L	83_L	0.554	0.11
77_G	211_W	0.551	0.11
29_V	53_L	0.550	0.11
31_P	229_S	0.544	0.11
18_H	28_E	0.543	0.11
98_V	152_R	0.540	0.11
14_I	28_E	0.539	0.11
79_A	86_I	0.538	0.11
166_P	210_I	0.537	0.11
20_S	139_P	0.535	0.11
184_V	194_L	0.535	0.11
81_L	124_S	0.535	0.11
12_S	226_Y	0.530	0.11
57_L	91_N	0.528	0.11
87_L	126_I	0.527	0.11
218_V	230_L	0.526	0.11
116_S	203_K	0.525	0.11
46_F	82_F	0.523	0.11
190_Y	196_S	0.521	0.11
29_V	81_L	0.520	0.11
53_L	121_L	0.518	0.11
51_L	70_L	0.518	0.11
42_L	47_S	0.517	0.11
68_L	196_S	0.514	0.11
63_T	208_T	0.512	0.10
91_N	134_Y	0.512	0.10
67_F	156_R	0.510	0.10
181_Y	185_E	0.509	0.10
43_F	122_I	0.504	0.10
16_L	211_W	0.503	0.10
12_S	69_I	0.503	0.10
58_Y	149_S	0.502	0.10
82_F	124_S	0.500	0.10
131_Q	150_A	0.500	0.10

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3s0xA	1	0.9025	100	0.446	Contact Map
1p1xA	1	0.3008	10.9	0.962	Contact Map
4cbcA	3	0.3305	9.4	0.964	Contact Map
4mh8A	1	0.3771	6.5	0.966	Contact Map
4g1qB	2	0.3263	5.9	0.967	Contact Map
4ltoA	3	0.5212	5.8	0.967	Contact Map
1mu2A	2	0.3136	5.7	0.967	Contact Map
4xpcA	1	0.3771	4.4	0.969	Contact Map
4g1qA	2	0.3347	4.1	0.969	Contact Map
4hr6A	1	0.1737	3.1	0.971	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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