Q980X8 - SULSO - GREMLIN Contacts

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Q980X8 - Arsenite transport protein (ArsB)

UniProt:	Q980X8	Sequences: MLISALIVMVITYCLIISRSITKIPPWASMFFGGILMVILGIISPEEALQSINLDVILFLITLFTFASALEVSGFLKFLAYKIIEKFKEPRKVLFYILLYSGLLSNLVTNDGVSASWTPVILELSRMIGVSEVPFLYALAVGVTIGSVIMPTGNPQNLLIALESGIKNPFITFTIYLTLPSIISLIIAYFILFRLFRKSLSLPSGINIKKEEEEKVDFDRRLGYLTLTLLVVTIILFFSLSFFKIDILLGSLVTSSILLLLTEKRRDIVRRMDWPTILFFIGLFIFTDGVLKSGIIQYLSNFLPPPDSVASIMIVSILLSQVLSNVPLVAIYIPIMISHSGITVVDWLALAAGSTIAGNFTILGAASNVIISEASESRGGKGFNFVEFMKYTIPILIPNAIIIYLFLVLFR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	411 (389)
Sequences:	5048 (3342)
Seq/√Len:	169.5

ECOLI - ARSB YBIR YBHI TTDT CITT YFJV YFBS
BACSU - YDFA YWRK YFLS
HALSA - Q9HMC9
SULSO - Q980X8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
82_K	86_K	4.133	1.00
89_E	92_K	4.053	1.00
121_I	139_L	3.827	1.00
362_I	372_S	3.771	1.00
227_L	231_V	3.627	1.00
387_E	390_K	3.207	1.00
47_E	292_K	3.180	1.00
114_S	143_V	3.060	1.00
220_R	224_Y	3.030	1.00
66_F	233_T	2.990	1.00
44_S	47_E	2.960	1.00
224_Y	228_T	2.951	1.00
61_I	277_I	2.825	1.00
349_A	353_G	2.754	1.00
297_Q	301_N	2.744	1.00
101_S	117_W	2.647	1.00
114_S	371_I	2.642	1.00
146_G	185_L	2.590	1.00
72_V	267_D	2.499	1.00
78_F	82_K	2.486	1.00
159_L	333_I	2.379	1.00
389_M	393_I	2.367	1.00
212_E	215_K	2.326	1.00
7_I	11_I	2.298	1.00
136_L	371_I	2.238	1.00
219_D	223_G	2.210	1.00
321_Q	360_F	2.201	1.00
190_F	194_R	2.196	1.00
392_T	396_L	2.191	1.00
221_R	225_L	2.186	1.00
167_K	172_T	2.159	1.00
314_I	404_Y	2.159	1.00
317_I	400_A	2.136	1.00
87_F	96_Y	2.124	1.00
229_L	233_T	2.116	1.00
183_I	406_F	2.078	1.00
172_T	175_I	1.999	1.00
171_I	175_I	1.995	1.00
151_P	161_A	1.949	1.00
226_T	229_L	1.936	1.00
222_L	226_T	1.931	1.00
147_S	154_N	1.915	1.00
118_T	136_L	1.840	1.00
393_I	396_L	1.835	1.00
318_L	322_V	1.819	1.00
231_V	235_I	1.818	1.00
258_L	262_T	1.799	1.00
219_D	222_L	1.786	1.00
226_T	230_L	1.783	1.00
223_G	226_T	1.777	1.00
232_V	236_L	1.756	1.00
70_L	75_F	1.734	1.00
13_Y	16_I	1.727	1.00
343_T	346_D	1.723	1.00
222_L	225_L	1.721	1.00
27_W	30_M	1.721	1.00
401_I	405_L	1.716	1.00
5_A	9_M	1.693	1.00
279_F	282_G	1.692	1.00
109_T	112_G	1.690	1.00
225_L	261_L	1.684	1.00
14_C	18_S	1.669	1.00
72_V	271_R	1.647	1.00
45_P	49_L	1.631	1.00
99_L	185_L	1.628	1.00
365_A	368_N	1.616	1.00
175_I	179_L	1.616	1.00
13_Y	19_R	1.614	1.00
396_L	400_A	1.599	1.00
225_L	229_L	1.589	1.00
91_R	193_F	1.589	1.00
315_V	319_L	1.583	1.00
298_Y	301_N	1.582	1.00
46_E	49_L	1.543	1.00
310_A	404_Y	1.539	1.00
13_Y	17_I	1.538	1.00
247_I	250_G	1.533	1.00
213_E	216_V	1.523	1.00
190_F	193_F	1.519	1.00
187_I	402_I	1.505	1.00
362_I	369_V	1.495	1.00
61_I	65_T	1.490	1.00
184_S	399_N	1.485	1.00
140_A	371_I	1.485	1.00
137_Y	141_V	1.481	1.00
178_T	182_I	1.474	1.00
196_F	391_Y	1.473	1.00
298_Y	302_F	1.470	1.00
131_S	199_S	1.459	1.00
15_L	29_S	1.458	1.00
220_R	223_G	1.456	1.00
8_V	36_L	1.453	1.00
9_M	12_T	1.450	1.00
233_T	237_F	1.445	1.00
314_I	318_L	1.438	1.00
229_L	254_T	1.436	1.00
125_S	135_F	1.425	1.00
62_T	251_S	1.410	1.00
239_S	243_F	1.408	1.00
349_A	407_L	1.404	1.00
148_V	181_S	1.403	1.00
71_E	271_R	1.402	1.00
267_D	270_R	1.402	1.00
13_Y	20_S	1.401	1.00
170_F	174_T	1.365	1.00
133_V	387_E	1.361	1.00
191_I	398_P	1.356	1.00
126_R	379_G	1.352	1.00
393_I	397_I	1.348	1.00
35_I	39_I	1.348	1.00
6_L	295_I	1.335	1.00
388_F	392_T	1.332	1.00
97_I	121_I	1.330	1.00
99_L	103_L	1.326	1.00
98_L	138_A	1.320	1.00
85_E	213_E	1.319	1.00
95_F	193_F	1.314	1.00
45_P	48_A	1.312	1.00
28_A	32_F	1.305	1.00
213_E	217_D	1.281	1.00
248_L	251_S	1.281	1.00
65_T	269_V	1.280	1.00
194_R	198_K	1.268	1.00
82_K	85_E	1.266	1.00
246_D	258_L	1.260	1.00
12_T	19_R	1.257	1.00
156_Q	355_T	1.249	1.00
214_E	220_R	1.247	1.00
103_L	107_L	1.230	1.00
155_P	284_F	1.229	1.00
62_T	255_S	1.211	1.00
384_N	387_E	1.210	1.00
386_V	390_K	1.204	1.00
194_R	197_R	1.201	1.00
15_L	18_S	1.198	1.00
100_Y	104_L	1.188	1.00
223_G	229_L	1.180	1.00
382_G	386_V	1.179	1.00
15_L	19_R	1.177	1.00
254_T	258_L	1.176	1.00
251_S	258_L	1.174	1.00
29_S	32_F	1.174	1.00
263_E	266_R	1.171	1.00
150_M	153_G	1.169	1.00
302_F	305_P	1.168	1.00
248_L	258_L	1.167	1.00
342_I	345_V	1.167	1.00
329_V	354_S	1.162	1.00
56_V	64_F	1.157	1.00
201_S	204_S	1.152	1.00
95_F	189_Y	1.148	1.00
148_V	177_L	1.147	1.00
231_V	234_I	1.147	1.00
351_A	354_S	1.147	1.00
354_S	357_A	1.146	1.00
6_L	10_V	1.145	1.00
316_S	350_L	1.144	1.00
149_I	181_S	1.138	1.00
280_F	358_G	1.132	1.00
164_S	347_W	1.131	1.00
397_I	401_I	1.129	1.00
224_Y	227_L	1.126	1.00
228_T	235_I	1.118	1.00
225_L	228_T	1.117	1.00
47_E	50_Q	1.115	1.00
180_P	184_S	1.114	1.00
12_T	29_S	1.109	1.00
153_G	358_G	1.106	1.00
189_Y	193_F	1.103	1.00
321_Q	324_S	1.100	1.00
316_S	354_S	1.093	1.00
288_D	292_K	1.091	1.00
317_I	396_L	1.088	1.00
251_S	254_T	1.085	1.00
257_I	262_T	1.081	1.00
173_F	177_L	1.080	1.00
360_F	396_L	1.079	1.00
42_I	48_A	1.076	1.00
266_R	270_R	1.075	1.00
17_I	20_S	1.069	1.00
19_R	26_P	1.067	1.00
10_V	14_C	1.056	0.99
246_D	249_L	1.047	0.99
12_T	286_F	1.044	0.99
33_G	38_V	1.043	0.99
134_P	192_L	1.041	0.99
174_T	178_T	1.041	0.99
152_T	170_F	1.038	0.99
141_V	395_I	1.031	0.99
252_L	256_S	1.028	0.99
316_S	332_Y	1.028	0.99
247_I	251_S	1.027	0.99
11_I	18_S	1.025	0.99
111_D	154_N	1.022	0.99
36_L	39_I	1.021	0.99
25_P	29_S	1.021	0.99
368_N	371_I	1.021	0.99
364_G	369_V	1.020	0.99
248_L	255_S	1.014	0.99
111_D	147_S	1.013	0.99
394_P	397_I	1.010	0.99
384_N	390_K	1.007	0.99
16_I	19_R	0.999	0.99
38_V	43_I	0.997	0.99
12_T	20_S	0.992	0.99
68_S	71_E	0.990	0.99
30_M	33_G	0.990	0.99
38_V	42_I	0.987	0.99
51_S	288_D	0.986	0.99
291_L	297_Q	0.982	0.99
247_I	255_S	0.982	0.99
221_R	224_Y	0.980	0.99
35_I	256_S	0.977	0.99
52_I	281_I	0.970	0.99
180_P	352_A	0.969	0.99
229_L	237_F	0.968	0.99
223_G	227_L	0.968	0.99
48_A	52_I	0.967	0.99
118_T	371_I	0.965	0.99
110_N	144_T	0.964	0.99
25_P	28_A	0.956	0.99
228_T	232_V	0.950	0.99
228_T	231_V	0.944	0.99
11_I	15_L	0.944	0.99
353_G	357_A	0.942	0.99
234_I	238_F	0.941	0.99
233_T	254_T	0.939	0.99
66_F	258_L	0.936	0.99
34_G	285_I	0.933	0.99
7_I	179_L	0.932	0.99
36_L	40_L	0.927	0.99
63_L	112_G	0.927	0.99
26_P	29_S	0.923	0.99
358_G	368_N	0.921	0.99
179_L	406_F	0.920	0.99
136_L	375_S	0.919	0.99
101_S	139_L	0.917	0.99
328_L	332_Y	0.916	0.99
81_Y	85_E	0.914	0.99
245_I	252_L	0.913	0.98
303_L	311_S	0.911	0.98
38_V	41_G	0.910	0.98
364_G	368_N	0.907	0.98
57_I	277_I	0.905	0.98
133_V	137_Y	0.902	0.98
193_F	197_R	0.890	0.98
12_T	33_G	0.882	0.98
352_A	356_I	0.875	0.98
247_I	262_T	0.873	0.98
313_M	404_Y	0.873	0.98
230_L	234_I	0.871	0.98
217_D	220_R	0.870	0.98
16_I	20_S	0.869	0.98
109_T	147_S	0.868	0.98
376_E	382_G	0.866	0.98
38_V	48_A	0.865	0.98
320_S	325_N	0.865	0.98
48_A	51_S	0.864	0.98
316_S	353_G	0.863	0.98
35_I	38_V	0.859	0.98
328_L	331_I	0.856	0.98
12_T	16_I	0.855	0.98
137_Y	391_Y	0.855	0.98
15_L	20_S	0.851	0.98
374_A	379_G	0.851	0.98
392_T	403_I	0.851	0.98
229_L	232_V	0.850	0.98
9_M	290_V	0.849	0.98
248_L	262_T	0.846	0.98
100_Y	143_V	0.837	0.97
51_S	54_L	0.835	0.97
367_S	371_I	0.829	0.97
60_L	146_G	0.828	0.97
47_E	51_S	0.826	0.97
142_G	185_L	0.825	0.97
226_T	237_F	0.824	0.97
291_L	296_I	0.822	0.97
156_Q	326_V	0.821	0.97
32_F	37_M	0.821	0.97
211_E	215_K	0.819	0.97
37_M	41_G	0.818	0.97
301_N	305_P	0.815	0.97
172_T	176_Y	0.811	0.97
31_F	37_M	0.811	0.97
237_F	240_L	0.810	0.97
215_K	301_N	0.810	0.97
142_G	146_G	0.809	0.97
155_P	358_G	0.806	0.97
320_S	354_S	0.805	0.97
256_S	260_L	0.801	0.97
385_F	392_T	0.797	0.96
146_G	153_G	0.794	0.96
289_G	293_S	0.789	0.96
137_Y	392_T	0.787	0.96
29_S	37_M	0.786	0.96
389_M	396_L	0.786	0.96
177_L	180_P	0.785	0.96
29_S	33_G	0.783	0.96
44_S	48_A	0.782	0.96
121_I	125_S	0.780	0.96
9_M	13_Y	0.777	0.96
50_Q	54_L	0.776	0.96
8_V	40_L	0.775	0.96
279_F	283_L	0.773	0.96
98_L	142_G	0.768	0.96
229_L	234_I	0.767	0.96
279_F	284_F	0.767	0.96
100_Y	117_W	0.766	0.96
191_I	195_L	0.765	0.96
390_K	393_I	0.763	0.95
289_G	292_K	0.760	0.95
392_T	395_I	0.756	0.95
8_V	33_G	0.756	0.95
7_I	14_C	0.755	0.95
26_P	324_S	0.755	0.95
324_S	358_G	0.755	0.95
60_L	64_F	0.754	0.95
255_S	258_L	0.754	0.95
329_V	333_I	0.753	0.95
122_L	381_K	0.750	0.95
37_M	289_G	0.748	0.95
171_I	174_T	0.744	0.95
390_K	394_P	0.743	0.95
217_D	221_R	0.740	0.95
218_F	222_L	0.739	0.95
257_I	261_L	0.737	0.95
9_M	16_I	0.736	0.94
290_V	299_L	0.735	0.94
359_N	362_I	0.735	0.94
108_V	136_L	0.735	0.94
32_F	36_L	0.734	0.94
319_L	322_V	0.733	0.94
43_I	47_E	0.733	0.94
104_L	113_V	0.733	0.94
276_T	373_E	0.729	0.94
300_S	304_P	0.728	0.94
174_T	181_S	0.728	0.94
319_L	328_L	0.727	0.94
154_N	157_N	0.727	0.94
174_T	177_L	0.726	0.94
385_F	396_L	0.725	0.94
12_T	17_I	0.724	0.94
77_K	81_Y	0.724	0.94
281_I	284_F	0.723	0.94
219_D	226_T	0.723	0.94
42_I	45_P	0.721	0.94
29_S	39_I	0.718	0.94
326_V	329_V	0.717	0.94
142_G	153_G	0.717	0.94
293_S	300_S	0.717	0.94
396_L	399_N	0.716	0.94
342_I	346_D	0.716	0.94
357_A	360_F	0.713	0.94
31_F	39_I	0.706	0.93
235_I	239_S	0.705	0.93
145_I	148_V	0.705	0.93
11_I	16_I	0.704	0.93
232_V	235_I	0.702	0.93
59_F	151_P	0.701	0.93
8_V	12_T	0.701	0.93
218_F	301_N	0.700	0.93
366_A	370_I	0.699	0.93
387_E	391_Y	0.698	0.93
255_S	259_L	0.696	0.93
148_V	356_I	0.693	0.93
219_D	237_F	0.692	0.92
71_E	123_E	0.691	0.92
226_T	233_T	0.690	0.92
359_N	368_N	0.689	0.92
156_Q	321_Q	0.687	0.92
11_I	20_S	0.685	0.92
187_I	191_I	0.684	0.92
247_I	252_L	0.684	0.92
14_C	20_S	0.683	0.92
366_A	369_V	0.680	0.92
141_V	188_A	0.680	0.92
144_T	367_S	0.678	0.92
153_G	156_Q	0.677	0.92
371_I	375_S	0.676	0.92
325_N	358_G	0.674	0.91
45_P	51_S	0.674	0.91
61_I	274_W	0.673	0.91
141_V	145_I	0.673	0.91
150_M	155_P	0.671	0.91
30_M	37_M	0.671	0.91
94_L	192_L	0.670	0.91
51_S	291_L	0.669	0.91
183_I	402_I	0.666	0.91
109_T	324_S	0.666	0.91
110_N	367_S	0.666	0.91
216_V	219_D	0.666	0.91
177_L	351_A	0.665	0.91
246_D	262_T	0.665	0.91
27_W	31_F	0.665	0.91
404_Y	408_V	0.665	0.91
57_I	281_I	0.663	0.91
233_T	236_L	0.663	0.91
280_F	326_V	0.662	0.91
313_M	353_G	0.662	0.91
247_I	254_T	0.660	0.91
34_G	282_G	0.660	0.91
110_N	154_N	0.655	0.90
351_A	368_N	0.654	0.90
68_S	268_I	0.652	0.90
355_T	358_G	0.652	0.90
323_L	328_L	0.652	0.90
30_M	34_G	0.651	0.90
326_V	366_A	0.651	0.90
98_L	192_L	0.651	0.90
8_V	17_I	0.650	0.90
259_L	262_T	0.648	0.90
131_S	381_K	0.648	0.90
264_K	267_D	0.647	0.90
83_I	96_Y	0.647	0.90
389_M	392_T	0.647	0.90
278_L	282_G	0.646	0.90
159_L	326_V	0.645	0.90
40_L	43_I	0.644	0.90
265_R	268_I	0.644	0.90
181_S	185_L	0.642	0.89
11_I	17_I	0.642	0.89
110_N	155_P	0.640	0.89
389_M	395_I	0.639	0.89
28_A	38_V	0.639	0.89
81_Y	127_M	0.637	0.89
65_T	255_S	0.635	0.89
255_S	262_T	0.634	0.89
25_P	308_S	0.634	0.89
108_V	113_V	0.633	0.89
55_D	162_L	0.633	0.89
364_G	367_S	0.632	0.89
170_F	173_F	0.632	0.89
257_I	260_L	0.630	0.89
88_K	92_K	0.629	0.88
386_V	389_M	0.628	0.88
320_S	324_S	0.627	0.88
294_G	297_Q	0.626	0.88
90_P	134_P	0.626	0.88
111_D	157_N	0.625	0.88
155_P	160_I	0.624	0.88
236_L	240_L	0.623	0.88
234_I	237_F	0.623	0.88
110_N	325_N	0.623	0.88
144_T	154_N	0.617	0.87
182_I	186_I	0.617	0.87
112_G	279_F	0.617	0.87
267_D	271_R	0.617	0.87
37_M	42_I	0.612	0.87
365_A	369_V	0.611	0.87
30_M	39_I	0.610	0.87
61_I	272_M	0.609	0.87
30_M	35_I	0.606	0.87
211_E	214_E	0.605	0.86
11_I	19_R	0.604	0.86
250_G	258_L	0.603	0.86
105_S	326_V	0.603	0.86
31_F	43_I	0.602	0.86
140_A	144_T	0.600	0.86
156_Q	324_S	0.599	0.86
34_G	37_M	0.595	0.86
125_S	132_E	0.594	0.85
27_W	38_V	0.594	0.85
34_G	48_A	0.592	0.85
120_V	159_L	0.590	0.85
105_S	110_N	0.590	0.85
214_E	217_D	0.590	0.85
96_Y	100_Y	0.590	0.85
111_D	119_P	0.589	0.85
215_K	401_I	0.589	0.85
7_I	214_E	0.589	0.85
225_L	237_F	0.588	0.85
77_K	127_M	0.585	0.85
372_S	376_E	0.585	0.85
309_V	349_A	0.584	0.84
153_G	326_V	0.583	0.84
70_L	226_T	0.582	0.84
250_G	262_T	0.582	0.84
155_P	359_N	0.582	0.84
235_I	238_F	0.580	0.84
280_F	289_G	0.580	0.84
7_I	190_F	0.579	0.84
147_S	331_I	0.579	0.84
64_F	67_A	0.576	0.84
400_A	403_I	0.572	0.83
355_T	368_N	0.572	0.83
363_L	366_A	0.571	0.83
405_L	408_V	0.571	0.83
33_G	48_A	0.570	0.83
229_L	236_L	0.569	0.83
369_V	372_S	0.568	0.83
7_I	15_L	0.568	0.83
196_F	199_S	0.567	0.83
46_E	50_Q	0.567	0.83
94_L	135_F	0.566	0.83
290_V	293_S	0.566	0.83
361_T	364_G	0.566	0.83
154_N	327_P	0.566	0.83
245_I	259_L	0.565	0.83
110_N	327_P	0.563	0.82
140_A	364_G	0.562	0.82
362_I	385_F	0.562	0.82
201_S	205_G	0.561	0.82
112_G	359_N	0.560	0.82
197_R	200_L	0.560	0.82
148_V	355_T	0.560	0.82
5_A	16_I	0.559	0.82
332_Y	350_L	0.558	0.82
238_F	242_F	0.558	0.82
394_P	398_P	0.556	0.82
140_A	143_V	0.555	0.81
177_L	181_S	0.554	0.81
147_S	156_Q	0.553	0.81
118_T	374_A	0.553	0.81
151_P	158_L	0.552	0.81
217_D	222_L	0.552	0.81
226_T	231_V	0.552	0.81
347_W	354_S	0.550	0.81
360_F	364_G	0.549	0.81
13_Y	26_P	0.549	0.81
78_F	81_Y	0.547	0.80
32_F	256_S	0.547	0.80
325_N	364_G	0.547	0.80
266_R	269_V	0.546	0.80
326_V	368_N	0.546	0.80
290_V	300_S	0.545	0.80
359_N	396_L	0.545	0.80
43_I	49_L	0.544	0.80
114_S	360_F	0.544	0.80
33_G	37_M	0.543	0.80
56_V	63_L	0.543	0.80
333_I	347_W	0.541	0.80
63_L	109_T	0.538	0.79
117_W	184_S	0.538	0.79
330_A	366_A	0.537	0.79
153_G	368_N	0.535	0.79
136_L	139_L	0.535	0.79
30_M	38_V	0.534	0.79
126_R	214_E	0.534	0.79
25_P	31_F	0.532	0.79
350_L	357_A	0.531	0.78
32_F	35_I	0.530	0.78
8_V	37_M	0.528	0.78
56_V	328_L	0.527	0.78
290_V	296_I	0.526	0.78
252_L	255_S	0.526	0.78
303_L	315_V	0.526	0.78
214_E	301_N	0.525	0.78
295_I	300_S	0.524	0.78
224_Y	237_F	0.524	0.78
45_P	249_L	0.523	0.77
280_F	284_F	0.522	0.77
59_F	143_V	0.521	0.77
368_N	372_S	0.521	0.77
114_S	140_A	0.521	0.77
264_K	342_I	0.521	0.77
297_Q	338_S	0.520	0.77
8_V	289_G	0.519	0.77
309_V	407_L	0.519	0.77
67_A	140_A	0.519	0.77
143_V	367_S	0.517	0.77
74_G	77_K	0.516	0.77
222_L	229_L	0.515	0.76
286_F	289_G	0.514	0.76
102_G	185_L	0.514	0.76
355_T	365_A	0.513	0.76
211_E	216_V	0.513	0.76
246_D	254_T	0.513	0.76
216_V	238_F	0.511	0.76
146_G	280_F	0.511	0.76
227_L	230_L	0.511	0.76
217_D	223_G	0.510	0.76
216_V	402_I	0.510	0.76
276_T	370_I	0.510	0.76
122_L	380_G	0.508	0.75
147_S	324_S	0.508	0.75
354_S	358_G	0.507	0.75
180_P	183_I	0.504	0.75
105_S	113_V	0.503	0.75
111_D	366_A	0.503	0.75
246_D	256_S	0.502	0.75
26_P	38_V	0.502	0.75
352_A	403_I	0.501	0.74
159_L	330_A	0.501	0.74
80_A	124_L	0.500	0.74

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4f35D	2	0.9343	100	0.434	Contact Map
4r1iA	2	0.9781	99.9	0.686	Contact Map
4r0cA	3	0.9611	99.9	0.719	Contact Map
4dx5A	3	0.4039	21.8	0.96	Contact Map
4pd6A	3	0.7956	15	0.963	Contact Map
3qe7A	2	0.4647	14.1	0.964	Contact Map
2cfqA	1	0.854	13.9	0.964	Contact Map
3w9iA	3	0.3844	11.8	0.965	Contact Map
4k0jA	3	0.3625	10.6	0.966	Contact Map
1j4nA	4	0.4501	9.6	0.966	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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