Q980X6 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q980X6 - Uncharacterized protein

UniProt:	Q980X6	Sequences: MVKKKVKRSKILIVGGFTIDEIQGKIRPGGPLIYSSLGVMRGGGIPKLYGLIGRDFDFEIDFISDLEKQLIYDEYTIRFKIDLTNEGRKLILLKKPKNRIKVISDNTVDGILVNPVCKEVDNMSIQSPIPIAVDIQGFVRNCIEYEEIRYEMGFRFPFNSNYMVMHGNREELESSKLELSDLFKVGFKEIIVSDGHNGFNVYTNMLAKYTYRPSKIGKNEIGTGDFLLGAYFALRLGGLEIIEAATIAGKLTEEFSNSEFLI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	262 (232)
Sequences:	21926 (16503)
Seq/√Len:	1083.5

ECOLI - KDGK RBSK SQUV YEGV PSUK YDJH FRLD K1PF YEII PFKB
BACSU - KDGK IOLC YDJE FRLD RBSK K1PF
HALSA - Q9HSM7 Q9HMJ3 Q9HP13
SULSO - Q980X6 KDGK Q981E2 Q97W01

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
44_G	233_A	3.266	1.00
10_K	109_D	2.803	1.00
194_D	200_N	2.595	1.00
47_K	67_E	2.544	1.00
112_L	132_A	2.530	1.00
201_V	245_A	2.484	1.00
234_L	239_L	2.367	1.00
10_K	45_I	2.251	1.00
199_F	227_L	2.218	1.00
240_E	243_E	2.115	1.00
23_Q	26_I	2.081	1.00
209_Y	242_I	2.047	1.00
169_R	194_D	2.045	1.00
183_F	202_Y	2.025	1.00
234_L	247_I	2.001	1.00
13_I	36_S	1.936	1.00
132_A	232_F	1.892	1.00
39_V	44_G	1.867	1.00
166_H	228_L	1.848	1.00
130_P	163_M	1.822	1.00
200_N	210_T	1.814	1.00
226_F	251_L	1.783	1.00
201_V	209_Y	1.779	1.00
12_L	108_V	1.766	1.00
110_G	130_P	1.758	1.00
176_K	208_K	1.737	1.00
38_G	229_G	1.736	1.00
11_I	39_V	1.724	1.00
239_L	243_E	1.721	1.00
179_L	202_Y	1.693	1.00
199_F	249_G	1.687	1.00
164_V	189_E	1.682	1.00
252_T	256_S	1.665	1.00
118_K	121_D	1.651	1.00
62_F	65_D	1.613	1.00
214_S	250_K	1.600	1.00
194_D	210_T	1.586	1.00
163_M	188_K	1.573	1.00
110_G	132_A	1.569	1.00
189_E	203_T	1.569	1.00
230_A	251_L	1.566	1.00
54_R	74_E	1.564	1.00
191_I	231_Y	1.545	1.00
231_Y	244_A	1.542	1.00
242_I	246_T	1.531	1.00
64_S	68_K	1.522	1.00
201_V	241_I	1.518	1.00
17_F	50_G	1.511	1.00
194_D	197_N	1.508	1.00
181_D	184_K	1.507	1.00
61_D	65_D	1.505	1.00
223_T	256_S	1.497	1.00
39_V	233_A	1.488	1.00
10_K	47_K	1.475	1.00
211_Y	245_A	1.465	1.00
230_A	247_I	1.459	1.00
130_P	164_V	1.419	1.00
176_K	180_S	1.401	1.00
214_S	246_T	1.391	1.00
211_Y	249_G	1.389	1.00
181_D	185_V	1.377	1.00
203_T	206_L	1.370	1.00
110_G	232_F	1.368	1.00
59_E	72_Y	1.363	1.00
54_R	59_E	1.356	1.00
77_I	82_D	1.348	1.00
61_D	64_S	1.348	1.00
233_A	237_G	1.336	1.00
134_D	193_S	1.288	1.00
189_E	241_I	1.278	1.00
189_E	235_R	1.260	1.00
37_L	41_R	1.257	1.00
94_K	97_K	1.251	1.00
45_I	67_E	1.250	1.00
78_R	82_D	1.247	1.00
202_Y	208_K	1.243	1.00
78_R	83_L	1.241	1.00
54_R	72_Y	1.235	1.00
87_G	90_L	1.231	1.00
122_N	126_Q	1.228	1.00
135_I	167_G	1.226	1.00
194_D	198_G	1.223	1.00
69_Q	72_Y	1.215	1.00
89_K	92_L	1.212	1.00
216_I	257_N	1.207	1.00
199_F	245_A	1.207	1.00
162_Y	165_M	1.203	1.00
28_P	62_F	1.200	1.00
189_E	231_Y	1.184	1.00
76_T	80_K	1.183	1.00
183_F	204_N	1.182	1.00
180_S	184_K	1.180	1.00
214_S	253_E	1.178	1.00
106_N	127_S	1.175	1.00
156_F	185_V	1.174	1.00
44_G	237_G	1.174	1.00
254_E	257_N	1.160	1.00
180_S	202_Y	1.141	1.00
230_A	248_A	1.136	1.00
123_M	126_Q	1.135	1.00
166_H	193_S	1.133	1.00
231_Y	235_R	1.129	1.00
77_I	81_I	1.126	1.00
80_K	83_L	1.123	1.00
21_E	57_D	1.117	1.00
234_L	244_A	1.115	1.00
243_E	246_T	1.110	1.00
17_F	48_L	1.105	1.00
56_F	59_E	1.105	1.00
121_D	125_I	1.103	1.00
234_L	237_G	1.095	1.00
164_V	235_R	1.092	1.00
189_E	201_V	1.088	1.00
180_S	208_K	1.087	1.00
130_P	188_K	1.085	1.00
69_Q	73_D	1.077	1.00
214_S	249_G	1.075	1.00
104_S	108_V	1.071	1.00
36_S	46_P	1.069	1.00
164_V	231_Y	1.068	1.00
19_I	60_I	1.061	1.00
172_L	192_V	1.061	1.00
44_G	236_L	1.059	1.00
193_S	227_L	1.058	1.00
39_V	46_P	1.056	1.00
35_S	112_L	1.050	1.00
79_F	83_L	1.044	1.00
231_Y	248_A	1.039	1.00
88_R	92_L	1.039	1.00
216_I	256_S	1.035	1.00
177_L	181_D	1.029	1.00
231_Y	241_I	1.022	1.00
103_I	106_N	1.021	1.00
51_L	73_D	1.013	1.00
57_D	60_I	1.007	1.00
38_G	226_F	1.005	1.00
226_F	255_F	1.004	1.00
69_Q	75_Y	1.003	1.00
77_I	80_K	1.001	1.00
76_T	81_I	1.000	1.00
42_G	230_A	0.995	1.00
72_Y	75_Y	0.994	1.00
40_M	66_L	0.992	1.00
79_F	82_D	0.992	1.00
177_L	180_S	0.980	1.00
246_T	250_K	0.980	1.00
42_G	251_L	0.978	1.00
111_I	129_I	0.974	1.00
33_I	63_I	0.972	1.00
133_V	162_Y	0.971	1.00
69_Q	74_E	0.965	1.00
244_A	248_A	0.965	1.00
169_R	197_N	0.964	1.00
112_L	232_F	0.963	1.00
213_P	249_G	0.962	1.00
188_K	204_N	0.959	1.00
113_V	131_I	0.958	1.00
17_F	33_I	0.952	1.00
166_H	231_Y	0.948	1.00
76_T	79_F	0.948	1.00
84_T	87_G	0.947	1.00
206_L	209_Y	0.947	1.00
249_G	252_T	0.942	1.00
239_L	247_I	0.938	1.00
119_E	122_N	0.937	1.00
14_V	111_I	0.934	1.00
104_S	107_T	0.931	1.00
211_Y	246_T	0.923	1.00
169_R	173_E	0.923	1.00
200_N	208_K	0.914	1.00
112_L	228_L	0.913	1.00
122_N	125_I	0.912	1.00
12_L	49_Y	0.911	1.00
152_M	156_F	0.910	1.00
35_S	228_L	0.910	1.00
233_A	247_I	0.898	1.00
51_L	71_I	0.897	1.00
54_R	73_D	0.894	1.00
22_I	27_R	0.890	1.00
47_K	104_S	0.885	1.00
172_L	178_E	0.885	1.00
168_N	171_E	0.880	1.00
216_I	253_E	0.880	1.00
39_V	229_G	0.878	1.00
88_R	91_I	0.868	1.00
167_G	172_L	0.867	1.00
175_S	178_E	0.857	1.00
121_D	124_S	0.857	1.00
240_E	244_A	0.851	1.00
40_M	45_I	0.840	1.00
13_I	32_L	0.835	1.00
102_V	127_S	0.830	1.00
71_I	75_Y	0.829	1.00
10_K	107_T	0.829	1.00
203_T	241_I	0.822	1.00
28_P	60_I	0.821	1.00
211_Y	242_I	0.817	1.00
230_A	234_L	0.817	1.00
159_N	162_Y	0.812	1.00
235_R	244_A	0.810	1.00
206_L	242_I	0.809	1.00
36_S	48_L	0.807	1.00
52_I	58_F	0.806	1.00
87_G	91_I	0.803	1.00
12_L	47_K	0.801	1.00
250_K	254_E	0.798	1.00
180_S	183_F	0.795	1.00
197_N	210_T	0.795	1.00
198_G	213_P	0.791	1.00
40_M	46_P	0.789	1.00
134_D	166_H	0.788	1.00
11_I	236_L	0.782	1.00
209_Y	245_A	0.780	1.00
179_L	192_V	0.775	1.00
47_K	108_V	0.771	1.00
84_T	90_L	0.767	1.00
71_I	74_E	0.762	1.00
120_V	123_M	0.757	1.00
102_V	106_N	0.751	1.00
227_L	249_G	0.751	1.00
203_T	209_Y	0.748	1.00
119_E	123_M	0.748	1.00
252_T	255_F	0.744	1.00
179_L	183_F	0.744	1.00
42_G	247_I	0.741	1.00
11_I	110_G	0.739	1.00
77_I	83_L	0.739	1.00
119_E	125_I	0.732	1.00
226_F	252_T	0.725	1.00
179_L	190_I	0.724	1.00
105_D	108_V	0.721	1.00
19_I	57_D	0.719	1.00
126_Q	157_P	0.710	1.00
226_F	230_A	0.709	1.00
117_C	120_V	0.706	1.00
120_V	125_I	0.705	1.00
85_N	89_K	0.704	1.00
120_V	124_S	0.701	1.00
76_T	83_L	0.700	1.00
126_Q	161_N	0.698	1.00
87_G	92_L	0.695	1.00
110_G	236_L	0.692	1.00
198_G	210_T	0.691	1.00
153_G	156_F	0.690	1.00
86_E	89_K	0.689	1.00
249_G	253_E	0.689	1.00
55_D	58_F	0.686	1.00
84_T	92_L	0.681	1.00
157_P	160_S	0.672	1.00
84_T	88_R	0.664	1.00
33_I	48_L	0.661	1.00
20_D	29_G	0.655	1.00
36_S	66_L	0.652	1.00
176_K	179_L	0.648	1.00
175_S	194_D	0.646	1.00
115_P	133_V	0.642	1.00
89_K	93_L	0.641	1.00
178_E	181_D	0.637	1.00
132_A	164_V	0.637	1.00
93_L	97_K	0.635	1.00
176_K	210_T	0.635	1.00
217_G	257_N	0.634	1.00
191_I	201_V	0.632	1.00
42_G	233_A	0.632	1.00
176_K	202_Y	0.630	1.00
90_L	93_L	0.628	1.00
160_S	186_G	0.628	1.00
109_D	129_I	0.623	1.00
84_T	89_K	0.623	1.00
239_L	244_A	0.622	1.00
120_V	126_Q	0.621	1.00
152_M	155_R	0.620	1.00
227_L	245_A	0.620	1.00
94_K	98_N	0.620	1.00
176_K	200_N	0.620	1.00
131_I	162_Y	0.615	1.00
93_L	96_P	0.614	1.00
243_E	247_I	0.613	1.00
108_V	129_I	0.612	1.00
102_V	105_D	0.611	1.00
196_H	215_K	0.608	1.00
227_L	252_T	0.607	1.00
183_F	203_T	0.604	1.00
245_A	249_G	0.595	1.00
117_C	121_D	0.594	1.00
103_I	107_T	0.591	1.00
31_P	136_Q	0.591	1.00
227_L	248_A	0.588	1.00
163_M	189_E	0.587	1.00
118_K	122_N	0.587	1.00
132_A	166_H	0.583	1.00
134_D	167_G	0.577	1.00
191_I	227_L	0.574	1.00
13_I	39_V	0.573	1.00
172_L	175_S	0.572	1.00
102_V	108_V	0.569	1.00
211_Y	214_S	0.567	1.00
229_G	233_A	0.567	1.00
132_A	228_L	0.566	1.00
11_I	44_G	0.566	1.00
95_K	98_N	0.562	1.00
78_R	81_I	0.561	1.00
178_E	182_L	0.560	1.00
56_F	60_I	0.554	1.00
52_I	72_Y	0.553	1.00
13_I	46_P	0.553	1.00
158_F	162_Y	0.552	1.00
175_S	179_L	0.552	1.00
29_G	34_Y	0.552	1.00
156_F	160_S	0.551	1.00
118_K	124_S	0.546	1.00
191_I	245_A	0.545	1.00
166_H	191_I	0.543	1.00
179_L	208_K	0.542	1.00
241_I	244_A	0.542	1.00
86_E	91_I	0.541	1.00
55_D	76_T	0.539	1.00
159_N	187_F	0.537	1.00
33_I	37_L	0.536	1.00
199_F	211_Y	0.532	1.00
170_E	174_S	0.532	1.00
241_I	245_A	0.532	1.00
151_E	154_F	0.530	1.00
175_S	200_N	0.530	1.00
19_I	28_P	0.528	1.00
247_I	251_L	0.527	1.00
157_P	161_N	0.527	1.00
214_S	254_E	0.524	1.00
21_E	78_R	0.524	1.00
179_L	182_L	0.523	1.00
235_R	238_G	0.518	1.00
45_I	236_L	0.517	1.00
42_G	229_G	0.517	1.00
97_K	101_K	0.516	1.00
169_R	195_G	0.516	1.00
238_G	244_A	0.516	1.00
14_V	49_Y	0.512	1.00
13_I	48_L	0.511	1.00
183_F	190_I	0.509	1.00
183_F	187_F	0.508	1.00
12_L	104_S	0.508	1.00
105_D	129_I	0.506	1.00
172_L	182_L	0.505	1.00
59_E	71_I	0.504	1.00
47_K	69_Q	0.503	1.00
153_G	157_P	0.502	1.00
35_S	232_F	0.501	1.00
134_D	225_D	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2qcvA	3	0.9733	100	0.343	Contact Map
3hj6A	2	0.9084	100	0.349	Contact Map
1tyyA	2	0.9275	100	0.349	Contact Map
3pl2A	2	0.9618	100	0.349	Contact Map
4du5A	2	0.916	100	0.35	Contact Map
3ljsA	2	0.9504	100	0.35	Contact Map
3iq0A	2	0.9504	100	0.353	Contact Map
4wjmA	2	0.9695	100	0.36	Contact Map
3lhxA	2	0.9427	100	0.365	Contact Map
2c4eA	2	0.9427	100	0.366	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0087 seconds.