HEM1 - SULSO - GREMLIN Contacts

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HEM1 - Glutamyl-tRNA reductase

UniProt:	Q980U7	Sequences: MSKDEELLQNYCSILFTYKTIGISNLHLYYFRETEIKSLKQLINAEFAILQTCNRVEIYLYSDTNTLKEVNKIIQYLNNIHNEPIGNQARVLCGKDAAKHLFLVASGADSLSIGEYEILSQIRSTIDMFKKLGFSGKYLQIFFERAIKVGRKVREETSISKGKVGIYSLAIDEAKKRFNDFYDRRILVIGAGEMAQKITSMLHNEGAKDVTIMNRTIEKAKQLALKFGYNYEKLDLDKLGNFDVAFISIYHENLRLENKWNTLIVDITVPPLFTGNNVITLEELERISNLNFKAREEELAKINKLVEDGINELLYDYKKEIYTEFMSKIMKRIETIRENEILRAYKELEKLGINDQQAKEILDLMTRSIIKKSFQPLFDNIRSLIFNGENSINYINFLIDIFKDGNISGFETEKIKEKQVSERSSI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	426 (390)
Sequences:	2451 (1630)
Seq/√Len:	82.5

ECOLI - HEM1
BACSU - HEM1
HALSA - HEM1
SULSO - HEM1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
103_L	303_N	6.759	1.00
264_I	273_F	6.570	1.00
152_K	156_E	4.924	1.00
268_T	272_L	4.224	1.00
39_L	43_I	4.171	1.00
185_R	209_D	3.940	1.00
153_V	302_I	3.930	1.00
185_R	211_T	3.730	1.00
247_I	272_L	3.663	1.00
48_A	143_F	3.536	1.00
46_E	136_G	3.521	1.00
209_D	230_N	3.346	1.00
39_L	42_L	3.099	1.00
355_D	358_A	3.085	1.00
99_K	307_E	2.989	1.00
15_L	90_R	2.973	1.00
247_I	273_F	2.945	1.00
298_E	301_K	2.903	1.00
334_E	337_R	2.781	1.00
337_R	366_T	2.725	1.00
213_M	232_E	2.674	1.00
152_K	309_G	2.553	1.00
22_G	88_Q	2.514	1.00
175_K	205_E	2.280	1.00
217_I	233_K	2.261	1.00
238_K	241_N	2.253	1.00
217_I	231_Y	2.245	1.00
187_L	213_M	2.195	1.00
340_E	343_R	2.180	1.00
217_I	221_K	2.166	1.00
221_K	225_L	2.160	1.00
101_L	122_I	2.142	1.00
293_K	296_E	2.140	1.00
309_G	312_E	2.118	1.00
333_I	373_S	2.108	1.00
27_H	271_P	2.071	1.00
152_K	308_D	2.060	1.00
200_S	226_K	2.047	1.00
95_K	314_L	2.034	1.00
186_I	207_A	2.025	1.00
232_E	238_K	1.974	1.00
330_M	371_K	1.966	1.00
330_M	378_F	1.951	1.00
103_L	109_D	1.938	1.00
22_G	25_N	1.910	1.00
59_Y	143_F	1.898	1.00
278_V	282_E	1.890	1.00
247_I	268_T	1.885	1.00
334_E	338_E	1.860	1.00
130_K	140_Q	1.854	1.00
264_I	276_N	1.833	1.00
249_I	272_L	1.830	1.00
117_E	197_K	1.824	1.00
60_L	70_V	1.820	1.00
142_F	313_L	1.809	1.00
96_D	99_K	1.786	1.00
158_S	161_K	1.748	1.00
13_S	59_Y	1.745	1.00
211_T	232_E	1.730	1.00
340_E	368_S	1.722	1.00
106_S	153_V	1.704	1.00
40_K	44_N	1.698	1.00
81_H	84_P	1.695	1.00
191_A	214_N	1.689	1.00
25_N	88_Q	1.652	1.00
129_F	134_F	1.626	1.00
345_Y	359_K	1.625	1.00
71_N	89_A	1.590	1.00
147_I	150_G	1.578	1.00
344_A	361_I	1.563	1.00
389_E	393_N	1.557	1.00
72_K	76_Y	1.535	1.00
126_I	140_Q	1.534	1.00
239_L	245_A	1.514	0.99
394_Y	401_I	1.505	0.99
50_L	122_I	1.497	0.99
40_K	43_I	1.496	0.99
16_F	29_Y	1.495	0.99
149_V	306_V	1.491	0.99
119_L	150_G	1.472	0.99
254_L	274_T	1.470	0.99
199_T	227_F	1.453	0.99
46_E	61_Y	1.445	0.99
333_I	374_F	1.441	0.99
163_K	169_L	1.424	0.99
300_A	303_N	1.424	0.99
183_D	208_K	1.415	0.99
98_A	310_I	1.407	0.99
56_V	107_G	1.405	0.99
213_M	236_L	1.400	0.99
104_V	109_D	1.399	0.99
337_R	363_D	1.396	0.99
178_F	244_V	1.393	0.99
196_Q	226_K	1.377	0.99
98_A	142_F	1.360	0.99
340_E	372_K	1.351	0.99
59_Y	104_V	1.349	0.99
163_K	168_S	1.345	0.99
26_L	282_E	1.344	0.99
325_F	404_D	1.338	0.99
325_F	399_I	1.326	0.99
126_I	130_K	1.309	0.98
337_R	367_R	1.302	0.98
170_A	267_I	1.301	0.98
61_Y	136_G	1.295	0.98
185_R	241_N	1.273	0.98
45_A	63_D	1.272	0.98
245_A	264_I	1.272	0.98
72_K	82_N	1.271	0.98
238_K	242_F	1.263	0.98
186_I	202_L	1.262	0.98
257_E	260_W	1.258	0.98
370_I	373_S	1.251	0.98
332_R	376_P	1.251	0.98
213_M	234_L	1.251	0.98
202_L	207_A	1.246	0.98
106_S	302_I	1.239	0.98
359_K	363_D	1.235	0.98
360_E	364_L	1.235	0.98
313_L	316_D	1.229	0.98
177_R	277_N	1.220	0.97
170_A	265_V	1.220	0.97
106_S	149_V	1.220	0.97
350_K	358_A	1.202	0.97
17_T	109_D	1.202	0.97
344_A	365_M	1.195	0.97
150_G	162_G	1.189	0.97
187_L	242_F	1.183	0.97
135_S	140_Q	1.179	0.97
329_I	404_D	1.175	0.97
176_K	290_L	1.175	0.97
90_R	109_D	1.175	0.97
19_K	109_D	1.171	0.97
230_N	238_K	1.169	0.97
259_K	275_G	1.168	0.97
384_L	388_G	1.168	0.97
122_I	143_F	1.166	0.97
107_G	113_I	1.163	0.97
356_Q	359_K	1.163	0.97
376_P	403_K	1.159	0.97
166_I	267_I	1.155	0.96
188_V	202_L	1.152	0.96
364_L	368_S	1.149	0.96
380_N	383_S	1.144	0.96
269_V	281_L	1.144	0.96
42_L	47_F	1.143	0.96
141_I	316_D	1.140	0.96
237_D	241_N	1.131	0.96
253_N	274_T	1.126	0.96
39_L	134_F	1.123	0.96
98_A	314_L	1.121	0.96
187_L	238_K	1.117	0.96
218_E	222_Q	1.115	0.96
349_E	359_K	1.115	0.96
149_V	305_L	1.112	0.96
211_T	242_F	1.109	0.96
16_F	89_A	1.109	0.96
59_Y	107_G	1.105	0.95
285_E	289_N	1.104	0.95
166_I	194_M	1.101	0.95
329_I	374_F	1.096	0.95
39_L	44_N	1.093	0.95
23_I	269_V	1.091	0.95
49_I	58_I	1.091	0.95
29_Y	85_I	1.081	0.95
95_K	311_N	1.070	0.95
211_T	238_K	1.069	0.95
357_Q	360_E	1.057	0.94
195_A	223_L	1.054	0.94
145_R	149_V	1.046	0.94
307_E	311_N	1.043	0.94
251_H	272_L	1.042	0.94
140_Q	144_E	1.042	0.94
211_T	230_N	1.042	0.94
185_R	208_K	1.041	0.94
38_S	41_Q	1.034	0.94
102_F	310_I	1.022	0.93
383_S	387_N	1.012	0.93
43_I	134_F	1.011	0.93
184_R	244_V	1.010	0.93
329_I	402_F	1.009	0.93
215_R	270_P	1.008	0.93
172_D	205_E	1.008	0.93
145_R	148_K	0.996	0.92
35_E	78_N	0.991	0.92
232_E	236_L	0.987	0.92
11_Y	138_Y	0.987	0.92
217_I	234_L	0.984	0.92
344_A	366_T	0.981	0.92
12_C	60_L	0.981	0.92
50_L	125_T	0.977	0.91
180_D	183_D	0.976	0.91
106_S	305_L	0.974	0.91
14_I	71_N	0.971	0.91
127_D	131_K	0.969	0.91
154_R	344_A	0.966	0.91
92_L	96_D	0.965	0.91
178_F	277_N	0.964	0.91
99_K	310_I	0.964	0.91
187_L	232_E	0.963	0.91
145_R	309_G	0.963	0.91
68_K	86_G	0.962	0.91
129_F	135_S	0.960	0.91
393_N	396_N	0.959	0.91
220_A	224_A	0.958	0.91
222_Q	225_L	0.957	0.91
393_N	397_F	0.952	0.90
188_V	199_T	0.950	0.90
362_L	365_M	0.949	0.90
163_K	172_D	0.935	0.90
18_Y	111_L	0.933	0.89
123_R	151_R	0.931	0.89
279_I	282_E	0.929	0.89
112_S	286_R	0.929	0.89
275_G	278_V	0.925	0.89
151_R	155_E	0.922	0.89
320_E	323_T	0.916	0.89
180_D	388_G	0.909	0.88
366_T	369_I	0.904	0.88
338_E	363_D	0.897	0.88
144_E	148_K	0.897	0.88
328_K	399_I	0.896	0.88
197_K	201_M	0.893	0.87
340_E	364_L	0.893	0.87
48_A	135_S	0.890	0.87
20_T	90_R	0.890	0.87
27_H	46_E	0.888	0.87
173_E	279_I	0.886	0.87
208_K	230_N	0.883	0.87
187_L	234_L	0.881	0.87
304_K	307_E	0.880	0.87
278_V	281_L	0.870	0.86
249_I	268_T	0.867	0.86
174_A	263_L	0.866	0.86
166_I	284_L	0.864	0.86
398_L	401_I	0.858	0.85
257_E	261_N	0.857	0.85
37_K	132_L	0.857	0.85
304_K	308_D	0.856	0.85
105_A	122_I	0.856	0.85
341_I	362_L	0.855	0.85
394_Y	397_F	0.853	0.85
210_V	229_Y	0.853	0.85
167_Y	198_I	0.851	0.85
357_Q	361_I	0.845	0.84
216_T	220_A	0.843	0.84
339_N	342_L	0.842	0.84
189_I	245_A	0.841	0.84
316_D	319_K	0.837	0.84
15_L	26_L	0.836	0.84
64_T	68_K	0.836	0.84
128_M	131_K	0.835	0.84
141_I	320_E	0.834	0.83
137_K	320_E	0.831	0.83
71_N	86_G	0.829	0.83
396_N	400_D	0.829	0.83
33_E	124_S	0.827	0.83
179_N	183_D	0.823	0.83
306_V	332_R	0.821	0.83
213_M	233_K	0.816	0.82
116_Y	154_R	0.813	0.82
274_T	280_T	0.813	0.82
127_D	130_K	0.811	0.82
156_E	305_L	0.806	0.81
112_S	169_L	0.804	0.81
28_L	84_P	0.803	0.81
222_Q	226_K	0.799	0.81
348_L	361_I	0.798	0.81
128_M	132_L	0.796	0.81
239_L	242_F	0.796	0.81
11_Y	61_Y	0.795	0.80
177_R	244_V	0.795	0.80
348_L	362_L	0.795	0.80
65_N	68_K	0.794	0.80
184_R	243_D	0.794	0.80
144_E	147_I	0.794	0.80
17_T	325_F	0.793	0.80
264_I	278_V	0.793	0.80
15_L	151_R	0.788	0.80
100_H	109_D	0.785	0.80
107_G	160_S	0.784	0.80
47_F	58_I	0.782	0.79
282_E	291_N	0.782	0.79
279_I	283_E	0.780	0.79
218_E	221_K	0.780	0.79
36_I	128_M	0.777	0.79
199_T	229_Y	0.777	0.79
363_D	367_R	0.776	0.79
341_I	363_D	0.775	0.79
329_I	398_L	0.773	0.79
189_I	273_F	0.770	0.78
325_F	328_K	0.769	0.78
11_Y	97_A	0.768	0.78
245_A	262_T	0.765	0.78
330_M	375_Q	0.764	0.78
48_A	125_T	0.762	0.78
296_E	300_A	0.759	0.77
316_D	323_T	0.759	0.77
380_N	400_D	0.758	0.77
191_A	212_I	0.757	0.77
301_K	304_K	0.751	0.77
243_D	260_W	0.749	0.76
124_S	245_A	0.748	0.76
187_L	326_M	0.746	0.76
129_F	348_L	0.746	0.76
335_T	339_N	0.745	0.76
294_A	297_E	0.744	0.76
166_I	281_L	0.744	0.76
187_L	236_L	0.739	0.75
185_R	242_F	0.738	0.75
385_I	388_G	0.738	0.75
365_M	369_I	0.737	0.75
325_F	381_I	0.733	0.75
198_I	246_F	0.730	0.75
75_Q	80_I	0.728	0.74
183_D	186_I	0.728	0.74
15_L	20_T	0.726	0.74
184_R	275_G	0.723	0.74
82_N	86_G	0.721	0.74
157_T	305_L	0.720	0.73
240_G	256_L	0.719	0.73
282_E	295_R	0.718	0.73
336_I	369_I	0.717	0.73
146_A	150_G	0.716	0.73
257_E	277_N	0.716	0.73
343_R	375_Q	0.712	0.73
157_T	302_I	0.712	0.73
24_S	27_H	0.711	0.73
117_E	271_P	0.709	0.72
378_F	382_R	0.709	0.72
163_K	291_N	0.707	0.72
282_E	285_E	0.707	0.72
96_D	307_E	0.706	0.72
112_S	166_I	0.706	0.72
332_R	335_T	0.705	0.72
35_E	41_Q	0.704	0.72
14_I	91_V	0.703	0.72
153_V	305_L	0.702	0.72
142_F	316_D	0.699	0.71
277_N	280_T	0.694	0.71
343_R	368_S	0.694	0.71
337_R	369_I	0.693	0.71
67_L	91_V	0.693	0.71
116_Y	150_G	0.692	0.71
159_I	333_I	0.692	0.71
271_P	283_E	0.691	0.70
306_V	310_I	0.690	0.70
237_D	256_L	0.689	0.70
214_N	220_A	0.687	0.70
288_S	291_N	0.686	0.70
52_T	55_R	0.685	0.70
261_N	277_N	0.685	0.70
357_Q	362_L	0.679	0.69
17_T	113_I	0.679	0.69
203_H	227_F	0.675	0.69
33_E	37_K	0.675	0.69
26_L	167_Y	0.672	0.68
138_Y	316_D	0.671	0.68
141_I	147_I	0.671	0.68
84_P	237_D	0.670	0.68
263_L	277_N	0.670	0.68
387_N	390_N	0.668	0.68
31_F	49_I	0.668	0.68
179_N	250_Y	0.666	0.68
41_Q	76_Y	0.666	0.68
335_T	338_E	0.665	0.67
102_F	329_I	0.663	0.67
157_T	174_A	0.662	0.67
122_I	244_V	0.662	0.67
137_K	140_Q	0.661	0.67
105_A	146_A	0.659	0.67
10_N	94_G	0.657	0.67
318_K	385_I	0.656	0.66
41_Q	44_N	0.655	0.66
15_L	92_L	0.651	0.66
370_I	374_F	0.649	0.66
17_T	90_R	0.649	0.66
108_A	303_N	0.647	0.65
29_Y	80_I	0.646	0.65
29_Y	78_N	0.644	0.65
329_I	377_L	0.643	0.65
31_F	56_V	0.643	0.65
333_I	370_I	0.642	0.65
295_R	298_E	0.642	0.65
120_S	328_K	0.641	0.65
252_E	274_T	0.640	0.65
280_T	358_A	0.640	0.65
216_T	219_K	0.639	0.64
191_A	219_K	0.639	0.64
397_F	401_I	0.637	0.64
299_L	302_I	0.636	0.64
23_I	271_P	0.636	0.64
336_I	365_M	0.635	0.64
10_N	13_S	0.633	0.64
164_V	295_R	0.633	0.64
59_Y	122_I	0.633	0.64
112_S	141_I	0.633	0.64
58_I	70_V	0.632	0.64
125_T	129_F	0.631	0.63
68_K	345_Y	0.630	0.63
111_L	281_L	0.630	0.63
246_F	272_L	0.629	0.63
26_L	269_V	0.628	0.63
172_D	267_I	0.626	0.63
72_K	235_D	0.624	0.63
248_S	267_I	0.623	0.62
75_Q	82_N	0.622	0.62
38_S	77_L	0.621	0.62
384_L	389_E	0.620	0.62
150_G	154_R	0.619	0.62
30_Y	51_Q	0.619	0.62
27_H	281_L	0.619	0.62
174_A	181_F	0.618	0.62
342_L	345_Y	0.618	0.62
310_I	313_L	0.616	0.62
223_L	226_K	0.616	0.62
325_F	329_I	0.615	0.61
291_N	295_R	0.615	0.61
163_K	299_L	0.614	0.61
33_E	36_I	0.613	0.61
381_I	398_L	0.612	0.61
48_A	101_L	0.611	0.61
100_H	104_V	0.611	0.61
173_E	287_I	0.610	0.61
384_L	394_Y	0.609	0.61
271_P	282_E	0.608	0.61
207_A	210_V	0.606	0.60
189_I	236_L	0.605	0.60
80_I	85_I	0.605	0.60
167_Y	267_I	0.602	0.60
95_K	373_S	0.600	0.60
169_L	288_S	0.600	0.60
394_Y	398_L	0.599	0.59
157_T	298_E	0.599	0.59
119_L	147_I	0.598	0.59
280_T	283_E	0.598	0.59
373_S	378_F	0.598	0.59
149_V	302_I	0.597	0.59
242_F	262_T	0.596	0.59
123_R	265_V	0.594	0.59
49_I	73_I	0.594	0.59
16_F	21_I	0.594	0.59
358_A	362_L	0.592	0.59
348_L	358_A	0.591	0.58
191_A	223_L	0.590	0.58
341_I	345_Y	0.589	0.58
62_S	66_T	0.589	0.58
111_L	166_I	0.588	0.58
365_M	368_S	0.588	0.58
173_E	176_K	0.586	0.58
356_Q	360_E	0.586	0.58
117_E	194_M	0.586	0.58
216_T	382_R	0.585	0.58
221_K	233_K	0.585	0.58
111_L	115_E	0.585	0.58
330_M	377_L	0.585	0.58
247_I	281_L	0.585	0.58
177_R	255_R	0.584	0.58
249_I	270_P	0.584	0.58
130_K	144_E	0.584	0.58
47_F	60_L	0.582	0.57
13_S	97_A	0.582	0.57
360_E	363_D	0.581	0.57
30_Y	36_I	0.581	0.57
380_N	401_I	0.581	0.57
202_L	212_I	0.581	0.57
174_A	244_V	0.578	0.57
34_T	124_S	0.576	0.56
201_M	302_I	0.575	0.56
277_N	282_E	0.575	0.56
196_Q	200_S	0.575	0.56
171_I	282_E	0.575	0.56
290_L	294_A	0.574	0.56
214_N	219_K	0.574	0.56
246_F	267_I	0.572	0.56
331_K	335_T	0.572	0.56
359_K	362_L	0.571	0.56
123_R	147_I	0.571	0.56
212_I	229_Y	0.571	0.56
67_L	93_C	0.569	0.56
251_H	268_T	0.569	0.56
12_C	62_S	0.568	0.55
367_R	382_R	0.568	0.55
363_D	366_T	0.566	0.55
105_A	135_S	0.565	0.55
69_E	72_K	0.564	0.55
166_I	305_L	0.564	0.55
396_N	403_K	0.563	0.55
23_I	27_H	0.563	0.55
196_Q	248_S	0.563	0.55
212_I	231_Y	0.561	0.55
198_I	216_T	0.561	0.55
35_E	38_S	0.560	0.54
260_W	356_Q	0.556	0.54
224_A	231_Y	0.556	0.54
150_G	302_I	0.556	0.54
236_L	242_F	0.555	0.54
49_I	77_L	0.554	0.54
126_I	147_I	0.553	0.53
37_K	128_M	0.553	0.53
366_T	373_S	0.553	0.53
41_Q	357_Q	0.552	0.53
167_Y	171_I	0.549	0.53
85_I	97_A	0.548	0.53
214_N	223_L	0.546	0.53
235_D	405_G	0.543	0.52
76_Y	233_K	0.543	0.52
126_I	144_E	0.543	0.52
14_I	347_E	0.543	0.52
56_V	143_F	0.542	0.52
362_L	393_N	0.542	0.52
36_I	43_I	0.541	0.52
113_I	142_F	0.541	0.52
68_K	241_N	0.540	0.52
179_N	184_R	0.540	0.52
215_R	249_I	0.540	0.52
276_N	282_E	0.539	0.52
252_E	272_L	0.538	0.52
177_R	257_E	0.538	0.52
109_D	140_Q	0.536	0.51
250_Y	272_L	0.536	0.51
238_K	370_I	0.536	0.51
105_A	119_L	0.536	0.51
247_I	264_I	0.536	0.51
337_R	344_A	0.535	0.51
204_N	287_I	0.535	0.51
15_L	21_I	0.535	0.51
154_R	381_I	0.535	0.51
31_F	78_N	0.534	0.51
17_T	163_K	0.533	0.51
87_N	237_D	0.533	0.51
207_A	244_V	0.533	0.51
189_I	198_I	0.531	0.51
123_R	327_S	0.531	0.51
311_N	315_Y	0.531	0.51
230_N	241_N	0.529	0.50
99_K	303_N	0.529	0.50
362_L	366_T	0.529	0.50
102_F	111_L	0.528	0.50
69_E	362_L	0.528	0.50
178_F	263_L	0.527	0.50
101_L	143_F	0.525	0.50
45_A	210_V	0.524	0.50
278_V	287_I	0.524	0.50
102_F	137_K	0.521	0.49
201_M	204_N	0.520	0.49
186_I	263_L	0.520	0.49
239_L	257_E	0.520	0.49
325_F	339_N	0.520	0.49
188_V	213_M	0.519	0.49
376_P	380_N	0.517	0.49
221_K	231_Y	0.517	0.49
15_L	197_K	0.516	0.49
243_D	257_E	0.516	0.49
16_F	88_Q	0.515	0.48
17_T	104_V	0.515	0.48
182_Y	189_I	0.515	0.48
10_N	86_G	0.515	0.48
48_A	59_Y	0.514	0.48
28_L	80_I	0.514	0.48
225_L	235_D	0.513	0.48
177_R	258_N	0.513	0.48
361_I	364_L	0.512	0.48
56_V	323_T	0.512	0.48
167_Y	172_D	0.512	0.48
13_S	90_R	0.510	0.48
212_I	402_F	0.509	0.48
101_L	202_L	0.509	0.48
29_Y	51_Q	0.507	0.47
221_K	230_N	0.507	0.47
258_N	331_K	0.507	0.47
246_F	336_I	0.506	0.47
246_F	265_V	0.505	0.47
202_L	206_G	0.505	0.47
75_Q	81_H	0.505	0.47
305_L	309_G	0.504	0.47
85_I	91_V	0.504	0.47
322_Y	382_R	0.503	0.47
125_T	346_K	0.503	0.47
388_G	393_N	0.502	0.47
267_I	368_S	0.502	0.47
34_T	37_K	0.501	0.47
48_A	122_I	0.501	0.47
37_K	42_L	0.500	0.47
95_K	310_I	0.500	0.47

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4n7rA	2	0.8732	100	0.35	Contact Map
1gpjA	2	0.8685	100	0.464	Contact Map
1edzA	2	0.6596	99.9	0.821	Contact Map
3u62A	1	0.5399	99.9	0.825	Contact Map
4ppmA	2	0.1479	99.9	0.825	Contact Map
1p77A	1	0.5798	99.9	0.826	Contact Map
3fbtA	2	0.6009	99.8	0.836	Contact Map
1nytA	6	0.5962	99.8	0.837	Contact Map
2hk9A	1	0.5798	99.7	0.852	Contact Map
3o8qA	2	0.5962	99.7	0.853	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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