Q980U1 - SULSO - GREMLIN Contacts

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Q980U1 - Sarcosine oxidase, subunit alpha related (SoxA), putative (SoxA-like)

UniProt:	Q980U1	Sequences: MRSSKMDMPIVLSKRHRRLRSMKDCEPGLPYNEIVENGKRIDLCYSKQYKKYTKKIEIRVGTSILHNKLLRIFPNIVKIYSKHFINLPDLITENTEKRELIFIELENLIIGGGTSGLGVLSEISKEEKTLLISSNIESNTDIPYPLPQINKDEFSKLLRDTINENKDRILEGILLGKFDEGIGFLTKDKILMVRAKRVFLATGGRYIPPIFDGNDIPGIISKNLYLRYGNRITKAIALGNSDDIIKVLFKVEKRVIINNGVLFLSKYYKELIDELGVEIINTNNLKVKREKGGMLKIITNERSFDSNILVYAIVKQPKIDHSYNIGIPYNFSEYFHIYMPIHSIEGKTNDNIYIVGGMRGISDEYTSFLSGKTAVNEKYLDEFINNLKDYTYIYDYYYQKNPKENPSPYIYGNKGYVCECEDITLSEVNRQVGRGFSKVEEIKRTIGLGTGECQGKLCTYSLGSFLGDRQLITFRTPLYRMVI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	483 (394)
Sequences:	3424 (2455)
Seq/√Len:	123.7

SULSO - Q980U1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
236_I	306_S	4.271	1.00
254_R	257_I	4.007	1.00
234_K	257_I	3.846	1.00
112_G	138_S	3.380	1.00
225_Y	310_V	3.028	1.00
343_S	347_K	2.833	1.00
239_G	242_D	2.772	1.00
258_N	262_L	2.728	1.00
253_K	275_L	2.645	1.00
375_V	380_L	2.609	1.00
293_G	309_L	2.465	1.00
278_E	302_R	2.424	1.00
179_D	182_I	2.403	1.00
236_I	296_K	2.396	1.00
289_R	293_G	2.342	1.00
107_N	199_F	2.331	1.00
249_F	275_L	2.313	1.00
106_E	128_K	2.307	1.00
287_V	309_L	2.243	1.00
112_G	133_S	2.227	1.00
147_P	150_N	2.218	1.00
107_N	123_I	2.206	1.00
447_G	450_T	2.199	1.00
234_K	305_D	2.196	1.00
105_L	130_L	2.192	1.00
271_L	275_L	2.182	1.00
146_L	151_K	2.162	1.00
59_R	63_S	2.155	1.00
154_F	162_I	2.148	1.00
269_K	273_D	2.134	1.00
60_V	63_S	2.128	1.00
260_G	263_F	2.115	1.00
108_L	132_I	2.109	1.00
295_L	303_S	2.095	1.00
59_R	62_T	2.086	1.00
158_L	162_I	2.065	1.00
417_V	428_V	2.026	1.00
423_I	427_E	2.009	1.00
125_K	161_T	2.001	1.00
280_I	302_R	1.991	1.00
370_S	373_T	1.991	1.00
157_L	161_T	1.962	1.00
211_F	287_V	1.960	1.00
286_K	297_I	1.938	1.00
161_T	164_E	1.925	1.00
234_K	307_N	1.894	1.00
159_R	163_N	1.894	1.00
146_L	150_N	1.871	1.00
288_K	295_L	1.869	1.00
155_S	159_R	1.857	1.00
78_K	82_K	1.842	1.00
288_K	303_S	1.828	1.00
148_Q	151_K	1.826	1.00
154_F	161_T	1.824	1.00
146_L	149_I	1.800	1.00
156_K	160_D	1.794	1.00
259_N	262_L	1.790	1.00
380_L	384_I	1.732	1.00
158_L	161_T	1.722	1.00
235_A	308_I	1.715	1.00
289_R	292_G	1.710	1.00
110_I	200_L	1.701	1.00
417_V	425_L	1.699	1.00
211_F	214_N	1.691	1.00
67_N	70_L	1.677	1.00
83_H	86_N	1.674	1.00
119_V	199_F	1.674	1.00
288_K	297_I	1.631	1.00
424_T	427_E	1.624	1.00
345_E	348_T	1.602	1.00
417_V	420_C	1.602	1.00
411_Y	414_K	1.600	1.00
448_L	462_L	1.593	1.00
161_T	167_D	1.589	1.00
122_E	372_K	1.587	1.00
183_G	194_R	1.586	1.00
155_S	161_T	1.579	1.00
271_L	274_E	1.572	1.00
287_V	293_G	1.561	1.00
428_V	431_Q	1.560	1.00
239_G	243_D	1.560	1.00
149_I	152_D	1.556	1.00
297_I	303_S	1.541	1.00
179_D	184_F	1.537	1.00
359_R	370_S	1.533	1.00
427_E	431_Q	1.521	1.00
432_V	442_I	1.510	1.00
147_P	152_D	1.504	1.00
105_L	108_L	1.497	1.00
154_F	158_L	1.496	1.00
181_G	184_F	1.495	1.00
216_I	287_V	1.487	1.00
180_E	184_F	1.480	1.00
353_Y	382_E	1.472	1.00
427_E	430_R	1.462	1.00
294_M	297_I	1.459	1.00
197_R	351_N	1.448	1.00
153_E	161_T	1.446	1.00
262_L	265_S	1.441	1.00
413_N	429_N	1.440	1.00
161_T	165_N	1.435	1.00
211_F	311_Y	1.411	1.00
63_S	66_H	1.408	1.00
109_I	199_F	1.407	1.00
106_E	196_K	1.401	1.00
60_V	66_H	1.397	1.00
423_I	428_V	1.383	1.00
212_D	286_K	1.380	1.00
293_G	296_K	1.374	1.00
121_S	125_K	1.368	1.00
159_R	162_I	1.366	1.00
155_S	162_I	1.361	1.00
144_Y	227_R	1.358	1.00
380_L	383_F	1.350	1.00
361_I	370_S	1.349	1.00
252_E	277_V	1.349	1.00
235_A	251_V	1.349	1.00
337_I	340_P	1.344	1.00
77_V	80_Y	1.337	1.00
89_D	92_T	1.335	1.00
62_T	65_L	1.334	1.00
244_I	312_A	1.331	1.00
174_L	177_K	1.322	1.00
375_V	379_Y	1.316	1.00
61_G	65_L	1.312	1.00
234_K	256_I	1.311	1.00
418_C	422_D	1.302	1.00
354_I	358_M	1.300	1.00
253_K	271_L	1.300	1.00
78_K	81_S	1.290	1.00
270_E	274_E	1.287	1.00
145_P	151_K	1.284	1.00
60_V	65_L	1.274	1.00
168_R	171_E	1.271	1.00
380_L	385_N	1.264	1.00
328_P	339_M	1.260	1.00
73_F	76_I	1.253	1.00
296_K	309_L	1.252	1.00
257_I	278_E	1.252	1.00
122_E	375_V	1.250	1.00
420_C	423_I	1.248	1.00
147_P	151_K	1.242	0.99
59_R	66_H	1.241	0.99
130_L	193_V	1.240	0.99
160_D	163_N	1.235	0.99
62_T	66_H	1.231	0.99
348_T	354_I	1.229	0.99
154_F	159_R	1.224	0.99
198_V	352_I	1.221	0.99
263_F	266_K	1.218	0.99
162_I	167_D	1.196	0.99
67_N	71_R	1.193	0.99
413_N	426_S	1.193	0.99
197_R	353_Y	1.191	0.99
153_E	162_I	1.188	0.99
195_A	198_V	1.187	0.99
59_R	65_L	1.180	0.99
145_P	149_I	1.173	0.99
130_L	169_I	1.167	0.99
132_I	174_L	1.165	0.99
168_R	172_G	1.157	0.99
87_L	92_T	1.157	0.99
106_E	130_L	1.146	0.99
430_R	433_G	1.143	0.99
182_I	186_T	1.138	0.99
367_S	371_G	1.136	0.99
178_F	181_G	1.132	0.99
236_I	304_F	1.131	0.99
69_L	73_F	1.128	0.99
161_T	166_K	1.116	0.99
212_D	216_I	1.114	0.99
246_K	250_K	1.111	0.99
155_S	166_K	1.109	0.99
335_F	339_M	1.098	0.99
240_N	243_D	1.091	0.99
61_G	66_H	1.090	0.99
199_F	379_Y	1.086	0.99
411_Y	418_C	1.081	0.99
418_C	423_I	1.075	0.99
440_E	443_K	1.075	0.99
425_L	429_N	1.072	0.98
225_Y	308_I	1.072	0.98
272_I	279_I	1.066	0.98
362_S	366_T	1.063	0.98
155_S	167_D	1.062	0.98
443_K	447_G	1.061	0.98
78_K	86_N	1.054	0.98
199_F	355_V	1.054	0.98
115_S	355_V	1.053	0.98
328_P	349_N	1.051	0.98
78_K	83_H	1.050	0.98
213_G	219_I	1.045	0.98
398_Y	401_N	1.042	0.98
145_P	148_Q	1.039	0.98
369_L	373_T	1.038	0.98
70_L	74_P	1.025	0.98
83_H	87_L	1.023	0.98
162_I	166_K	1.021	0.98
65_L	69_L	1.019	0.98
280_I	298_I	1.001	0.98
80_Y	83_H	0.998	0.98
162_I	165_N	0.994	0.98
254_R	262_L	0.985	0.97
148_Q	152_D	0.985	0.97
124_S	165_N	0.979	0.97
428_V	442_I	0.979	0.97
205_R	318_K	0.978	0.97
213_G	286_K	0.978	0.97
81_S	86_N	0.975	0.97
235_A	256_I	0.971	0.97
169_I	172_G	0.970	0.97
415_G	418_C	0.966	0.97
77_V	86_N	0.963	0.97
347_K	382_E	0.954	0.97
80_Y	86_N	0.952	0.97
335_F	340_P	0.952	0.97
418_C	424_T	0.949	0.97
395_D	398_Y	0.942	0.97
441_E	445_T	0.938	0.96
178_F	182_I	0.937	0.96
177_K	198_V	0.935	0.96
426_S	429_N	0.934	0.96
290_E	294_M	0.932	0.96
153_E	164_E	0.922	0.96
212_D	215_D	0.921	0.96
155_S	158_L	0.917	0.96
372_K	376_N	0.917	0.96
406_P	409_Y	0.911	0.96
424_T	428_V	0.910	0.96
289_R	294_M	0.908	0.96
82_K	86_N	0.907	0.96
412_G	415_G	0.905	0.96
453_C	458_C	0.903	0.96
246_K	268_Y	0.898	0.95
178_F	184_F	0.896	0.95
77_V	82_K	0.895	0.95
59_R	64_I	0.895	0.95
394_Y	398_Y	0.893	0.95
78_K	85_I	0.891	0.95
379_Y	383_F	0.891	0.95
79_I	82_K	0.888	0.95
127_E	385_N	0.888	0.95
76_I	79_I	0.887	0.95
153_E	156_K	0.886	0.95
371_G	375_V	0.885	0.95
260_G	264_L	0.884	0.95
233_T	307_N	0.883	0.95
420_C	427_E	0.883	0.95
258_N	263_F	0.881	0.95
108_L	195_A	0.880	0.95
157_L	162_I	0.880	0.95
109_I	129_T	0.880	0.95
117_L	162_I	0.876	0.95
381_D	384_I	0.871	0.95
222_K	226_L	0.871	0.95
164_E	167_D	0.869	0.95
118_G	371_G	0.865	0.94
269_K	279_I	0.864	0.94
106_E	127_E	0.864	0.94
153_E	160_D	0.862	0.94
76_I	81_S	0.862	0.94
261_V	298_I	0.862	0.94
327_I	352_I	0.860	0.94
399_Q	403_K	0.858	0.94
154_F	166_K	0.858	0.94
251_V	256_I	0.857	0.94
160_D	164_E	0.856	0.94
121_S	124_S	0.854	0.94
88_P	91_I	0.853	0.94
260_G	265_S	0.853	0.94
418_C	428_V	0.849	0.94
322_S	325_I	0.845	0.94
418_C	427_E	0.843	0.94
81_S	84_F	0.843	0.94
118_G	368_F	0.837	0.93
183_G	186_T	0.835	0.93
363_D	366_T	0.833	0.93
259_N	304_F	0.832	0.93
346_G	370_S	0.829	0.93
141_D	144_Y	0.827	0.93
406_P	410_I	0.825	0.93
197_R	382_E	0.822	0.93
431_Q	446_I	0.821	0.93
294_M	298_I	0.820	0.93
259_N	280_I	0.819	0.93
211_F	215_D	0.817	0.93
237_A	310_V	0.816	0.93
154_F	157_L	0.813	0.92
287_V	311_Y	0.810	0.92
295_L	305_D	0.810	0.92
220_I	310_V	0.809	0.92
441_E	444_R	0.807	0.92
80_Y	84_F	0.807	0.92
287_V	291_K	0.806	0.92
355_V	371_G	0.805	0.92
412_G	427_E	0.804	0.92
322_S	329_Y	0.804	0.92
263_F	267_Y	0.802	0.92
245_I	260_G	0.802	0.92
272_I	277_V	0.802	0.92
87_L	90_L	0.802	0.92
138_S	159_R	0.801	0.92
419_E	422_D	0.800	0.92
261_V	304_F	0.800	0.92
179_D	183_G	0.800	0.92
76_I	80_Y	0.799	0.92
417_V	427_E	0.798	0.92
412_G	418_C	0.796	0.92
237_A	244_I	0.795	0.92
417_V	423_I	0.794	0.92
427_E	432_V	0.791	0.91
236_I	261_V	0.788	0.91
323_Y	329_Y	0.788	0.91
104_E	128_K	0.787	0.91
200_L	322_S	0.787	0.91
243_D	246_K	0.785	0.91
288_K	294_M	0.785	0.91
336_H	340_P	0.784	0.91
421_E	425_L	0.782	0.91
153_E	157_L	0.782	0.91
419_E	423_I	0.780	0.91
172_G	186_T	0.776	0.91
424_T	429_N	0.774	0.90
60_V	64_I	0.772	0.90
244_I	247_V	0.772	0.90
418_C	421_E	0.770	0.90
423_I	431_Q	0.770	0.90
226_L	230_N	0.770	0.90
138_S	169_I	0.769	0.90
68_K	71_R	0.768	0.90
384_I	387_L	0.765	0.90
270_E	273_D	0.765	0.90
77_V	81_S	0.760	0.90
81_S	85_I	0.760	0.90
208_P	215_D	0.758	0.90
243_D	315_K	0.757	0.89
425_L	428_V	0.757	0.89
66_H	70_L	0.754	0.89
222_K	247_V	0.752	0.89
131_L	138_S	0.751	0.89
108_L	184_F	0.747	0.89
216_I	289_R	0.747	0.89
82_K	85_I	0.746	0.89
107_N	197_R	0.745	0.89
222_K	312_A	0.745	0.89
172_G	191_L	0.742	0.89
115_S	367_S	0.742	0.89
377_E	382_E	0.741	0.88
414_K	419_E	0.740	0.88
87_L	91_I	0.736	0.88
237_A	247_V	0.736	0.88
245_I	272_I	0.736	0.88
154_F	167_D	0.735	0.88
145_P	150_N	0.735	0.88
61_G	64_I	0.734	0.88
402_P	407_S	0.731	0.88
137_E	143_P	0.730	0.88
76_I	82_K	0.727	0.88
230_N	250_K	0.725	0.87
247_V	250_K	0.724	0.87
290_E	293_G	0.723	0.87
443_K	450_T	0.723	0.87
249_F	253_K	0.721	0.87
343_S	348_T	0.719	0.87
75_N	79_I	0.717	0.87
156_K	159_R	0.717	0.87
269_K	272_I	0.717	0.87
268_Y	275_L	0.717	0.87
345_E	377_E	0.716	0.87
428_V	432_V	0.716	0.87
153_E	159_R	0.716	0.87
205_R	320_D	0.715	0.87
77_V	83_H	0.714	0.87
69_L	74_P	0.713	0.87
78_K	84_F	0.713	0.87
72_I	76_I	0.713	0.87
319_I	329_Y	0.712	0.86
403_K	407_S	0.711	0.86
316_Q	460_Y	0.709	0.86
84_F	88_P	0.708	0.86
443_K	446_I	0.705	0.86
411_Y	415_G	0.702	0.86
176_G	185_L	0.702	0.86
185_L	192_M	0.701	0.86
65_L	71_R	0.700	0.86
400_K	406_P	0.698	0.85
447_G	451_G	0.697	0.85
135_N	144_Y	0.695	0.85
447_G	458_C	0.693	0.85
61_G	88_P	0.692	0.85
220_I	225_Y	0.689	0.85
124_S	166_K	0.689	0.85
206_Y	313_I	0.686	0.84
249_F	271_L	0.685	0.84
104_E	194_R	0.685	0.84
298_I	302_R	0.684	0.84
225_Y	229_G	0.684	0.84
174_L	183_G	0.683	0.84
69_L	76_I	0.682	0.84
213_G	216_I	0.681	0.84
414_K	418_C	0.679	0.84
109_I	120_L	0.678	0.84
67_N	73_F	0.675	0.83
421_E	424_T	0.675	0.83
64_I	71_R	0.674	0.83
220_I	308_I	0.670	0.83
209_P	309_L	0.668	0.83
421_E	427_E	0.666	0.83
436_F	445_T	0.665	0.82
413_N	425_L	0.664	0.82
86_N	90_L	0.662	0.82
437_S	442_I	0.662	0.82
384_I	388_K	0.662	0.82
210_I	214_N	0.661	0.82
412_G	428_V	0.661	0.82
127_E	380_L	0.660	0.82
412_G	423_I	0.660	0.82
182_I	185_L	0.659	0.82
177_K	325_I	0.659	0.82
252_E	275_L	0.656	0.82
180_E	185_L	0.656	0.82
123_I	129_T	0.655	0.82
319_I	358_M	0.655	0.82
413_N	419_E	0.655	0.82
421_E	426_S	0.654	0.81
415_G	419_E	0.654	0.81
204_G	357_G	0.653	0.81
114_T	364_E	0.653	0.81
343_S	346_G	0.648	0.81
407_S	410_I	0.647	0.81
416_Y	424_T	0.646	0.81
70_L	73_F	0.642	0.80
66_H	71_R	0.642	0.80
422_D	427_E	0.641	0.80
400_K	403_K	0.641	0.80
357_G	367_S	0.640	0.80
443_K	455_G	0.639	0.80
157_L	164_E	0.639	0.80
226_L	247_V	0.638	0.80
181_G	185_L	0.638	0.80
88_P	92_T	0.636	0.80
227_R	231_R	0.635	0.80
273_D	279_I	0.634	0.79
393_I	397_Y	0.634	0.79
273_D	276_G	0.631	0.79
438_K	444_R	0.630	0.79
311_Y	419_E	0.629	0.79
168_R	173_I	0.627	0.79
177_K	180_E	0.627	0.79
197_R	379_Y	0.626	0.79
65_L	70_L	0.626	0.79
65_L	74_P	0.624	0.78
158_L	164_E	0.621	0.78
223_N	226_L	0.619	0.78
252_E	272_I	0.618	0.78
109_I	131_L	0.617	0.78
79_I	83_H	0.617	0.78
268_Y	277_V	0.615	0.77
397_Y	403_K	0.614	0.77
264_L	267_Y	0.613	0.77
327_I	349_N	0.612	0.77
177_K	181_G	0.611	0.77
200_L	325_I	0.611	0.77
439_V	443_K	0.609	0.77
414_K	426_S	0.608	0.77
153_E	158_L	0.608	0.77
361_I	366_T	0.607	0.76
395_D	399_Q	0.606	0.76
417_V	424_T	0.603	0.76
133_S	138_S	0.601	0.76
396_Y	400_K	0.597	0.75
123_I	375_V	0.596	0.75
175_L	190_I	0.591	0.74
284_N	298_I	0.591	0.74
76_I	83_H	0.590	0.74
248_L	260_G	0.590	0.74
293_G	298_I	0.589	0.74
265_S	282_T	0.589	0.74
107_N	383_F	0.588	0.74
208_P	221_S	0.586	0.74
226_L	250_K	0.584	0.74
381_D	385_N	0.583	0.73
374_A	379_Y	0.582	0.73
268_Y	271_L	0.581	0.73
340_P	343_S	0.580	0.73
324_N	327_I	0.580	0.73
327_I	350_D	0.579	0.73
272_I	276_G	0.579	0.73
420_C	424_T	0.578	0.73
227_R	232_I	0.577	0.73
69_L	72_I	0.576	0.73
403_K	406_P	0.575	0.72
224_L	227_R	0.573	0.72
295_L	299_T	0.573	0.72
68_K	74_P	0.572	0.72
418_C	426_S	0.572	0.72
234_K	259_N	0.571	0.72
355_V	379_Y	0.571	0.72
394_Y	397_Y	0.570	0.72
114_T	371_G	0.570	0.72
143_P	155_S	0.570	0.72
418_C	425_L	0.567	0.71
172_G	176_G	0.567	0.71
381_D	389_D	0.566	0.71
450_T	459_T	0.566	0.71
413_N	418_C	0.566	0.71
346_G	373_T	0.565	0.71
153_E	166_K	0.565	0.71
217_P	289_R	0.565	0.71
76_I	86_N	0.563	0.71
370_S	375_V	0.562	0.71
397_Y	400_K	0.562	0.71
169_I	173_I	0.560	0.71
106_E	123_I	0.559	0.70
412_G	419_E	0.559	0.70
423_I	426_S	0.558	0.70
225_Y	251_V	0.558	0.70
294_M	300_N	0.552	0.69
170_L	173_I	0.549	0.69
138_S	168_R	0.549	0.69
123_I	127_E	0.548	0.69
366_T	370_S	0.548	0.69
413_N	427_E	0.548	0.69
219_I	287_V	0.547	0.69
419_E	424_T	0.546	0.69
211_F	216_I	0.546	0.69
70_L	78_K	0.546	0.69
159_R	167_D	0.545	0.68
401_N	407_S	0.544	0.68
249_F	268_Y	0.543	0.68
157_L	163_N	0.541	0.68
288_K	305_D	0.540	0.68
66_H	69_L	0.540	0.68
413_N	416_Y	0.540	0.68
427_E	434_R	0.538	0.67
68_K	72_I	0.538	0.67
447_G	453_C	0.538	0.67
155_S	164_E	0.537	0.67
451_G	458_C	0.535	0.67
68_K	73_F	0.535	0.67
238_L	284_N	0.534	0.67
207_I	316_Q	0.534	0.67
70_L	76_I	0.533	0.67
200_L	319_I	0.533	0.67
238_L	309_L	0.532	0.67
420_C	428_V	0.530	0.66
443_K	449_G	0.530	0.66
156_K	163_N	0.530	0.66
155_S	165_N	0.529	0.66
443_K	454_Q	0.527	0.66
254_R	263_F	0.525	0.66
414_K	434_R	0.525	0.66
325_I	329_Y	0.524	0.65
222_K	244_I	0.524	0.65
64_I	68_K	0.523	0.65
418_C	429_N	0.521	0.65
322_S	354_I	0.521	0.65
239_G	244_I	0.520	0.65
400_K	407_S	0.520	0.65
177_K	184_F	0.520	0.65
396_Y	401_N	0.519	0.65
364_E	368_F	0.519	0.65
398_Y	402_P	0.519	0.65
322_S	326_G	0.518	0.65
121_S	158_L	0.518	0.65
181_G	186_T	0.517	0.64
209_P	287_V	0.517	0.64
260_G	277_V	0.517	0.64
142_I	250_K	0.516	0.64
95_T	98_R	0.516	0.64
398_Y	403_K	0.515	0.64
336_H	339_M	0.515	0.64
262_L	266_K	0.515	0.64
444_R	447_G	0.514	0.64
61_G	71_R	0.514	0.64
176_G	179_D	0.511	0.64
259_N	263_F	0.510	0.63
297_I	301_E	0.509	0.63
139_N	142_I	0.509	0.63
457_L	461_S	0.509	0.63
201_A	208_P	0.508	0.63
418_C	431_Q	0.507	0.63
353_Y	377_E	0.507	0.63
122_E	380_L	0.504	0.62
320_D	323_Y	0.504	0.62
244_I	260_G	0.503	0.62
256_I	307_N	0.502	0.62
296_K	299_T	0.501	0.62
171_E	177_K	0.501	0.62
284_N	299_T	0.500	0.62
236_I	259_N	0.500	0.62

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2gagA	1	0.9669	100	0.529	Contact Map
1y56A	3	0.9027	100	0.588	Contact Map
2vdcG	1	0.7888	100	0.625	Contact Map
4ylfB	1	0.7764	100	0.631	Contact Map
1gteA	4	0.9627	100	0.65	Contact Map
3ctyA	2	0.5756	100	0.66	Contact Map
2q0lA	2	0.5735	100	0.661	Contact Map
3f8dA	2	0.5797	100	0.664	Contact Map
2q7vA	2	0.5776	100	0.668	Contact Map
4up3A	2	0.5714	100	0.67	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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