GREMLIN Database
DNLI - DNA ligase
UniProt: Q980T8 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 601 (536)
Sequences: 1821 (1187)
Seq/√Len: 51.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
451_V470_A8.3801.00
363_K367_A7.9491.00
358_V363_K5.1131.00
473_N480_E4.9761.00
276_F284_N4.4781.00
304_E357_D4.4721.00
367_A370_K4.3781.00
575_T579_E4.3641.00
570_S573_D4.2421.00
355_Y371_L3.8581.00
268_I347_V3.8511.00
448_L471_A3.8321.00
256_I365_L3.8131.00
26_L30_L3.6371.00
155_D158_E3.5041.00
451_V481_S3.0821.00
352_L371_L3.0111.00
504_I524_E2.9921.00
18_S21_Q2.9861.00
257_V396_L2.9451.00
453_G464_I2.8591.00
72_I144_I2.7721.00
150_L162_L2.6571.00
402_R406_E2.6501.00
504_I526_V2.6341.00
268_I277_I2.5621.00
446_V580_I2.5061.00
474_P477_D2.4861.00
90_D164_R2.4681.00
358_V371_L2.4601.00
307_I349_L2.4291.00
326_E329_H2.3771.00
6_I10_F2.3301.00
364_P367_A2.2691.00
275_I293_V2.2531.00
376_V382_V2.2451.00
370_K374_S2.2341.00
473_N476_T2.2111.00
76_T98_L2.2111.00
261_Y385_A2.1991.00
415_A419_D2.1971.00
499_K503_E2.1921.00
392_N395_D2.1611.00
309_G347_V2.1521.00
397_K401_Y2.1511.00
5_V32_K2.1251.00
322_R326_E2.1221.00
388_I399_F2.1011.00
490_S493_Q2.0941.00
496_E567_D2.0791.00
373_E384_I2.0721.00
266_A277_I2.0671.00
472_Y574_A2.0671.00
391_N395_D2.0581.00
395_D398_S2.0391.00
465_S494_L2.0021.00
480_E577_T2.0011.00
566_R569_K1.9901.00
352_L375_I1.9841.00
125_Y129_S1.9791.00
515_S522_W1.9721.00
558_R561_R1.9611.00
9_Y13_L1.9541.00
303_K356_E1.9490.99
119_L124_V1.8820.99
313_A322_R1.8810.99
532_I563_I1.8800.99
482_V580_I1.8770.99
34_D37_I1.8750.99
16_I21_Q1.8590.99
66_L95_A1.8520.99
373_E387_H1.8470.99
450_V501_L1.8280.99
123_E153_K1.8240.99
23_T178_T1.8110.99
363_K371_L1.8080.99
338_E342_E1.8070.99
286_T293_V1.7900.99
445_T530_E1.7830.99
21_Q24_A1.7810.99
27_A185_I1.7790.99
467_L501_L1.7500.99
459_K487_S1.7290.99
141_D145_R1.6930.99
271_K274_K1.6800.98
536_I555_L1.6760.98
533_G557_I1.6730.98
294_D298_K1.6710.98
479_F571_P1.6610.98
9_Y29_L1.6500.98
270_K275_I1.6270.98
151_L163_V1.6250.98
474_P578_D1.6050.98
28_D32_K1.6050.98
292_V347_V1.6020.98
70_I95_A1.5910.98
538_I581_L1.5910.98
470_A479_F1.5860.98
301_E377_K1.5810.98
154_A162_L1.5720.98
42_V179_V1.5710.98
27_A31_S1.5520.97
307_I347_V1.5470.97
459_K491_D1.5410.97
257_V413_V1.5380.97
352_L355_Y1.5380.97
466_S486_A1.5360.97
369_R373_E1.5250.97
205_A210_I1.5010.97
20_L23_T1.4960.97
257_V390_A1.4880.97
271_K304_E1.4690.96
449_V528_V1.4660.96
402_R405_S1.4610.96
24_A28_D1.4550.96
91_L457_K1.4520.96
197_I200_A1.4430.96
272_E303_K1.4410.96
371_L374_S1.4200.96
257_V411_V1.4130.95
460_R486_A1.4130.95
498_Q502_M1.4020.95
576_T579_E1.3970.95
127_T146_L1.3970.95
534_S537_T1.3930.95
365_L420_A1.3920.95
72_I148_A1.3760.95
454_F468_L1.3750.95
251_M254_N1.3730.95
437_D534_S1.3540.94
445_T532_I1.3520.94
474_P576_T1.3490.94
450_V529_A1.3270.94
275_I300_I1.3250.94
264_E289_Y1.3240.94
70_I98_L1.3240.94
530_E564_R1.3200.94
423_Q430_L1.3200.94
207_L210_I1.3200.94
84_L94_V1.3130.93
7_A158_E1.3120.93
449_V574_A1.3120.93
314_I319_G1.3010.93
445_T563_I1.2890.93
245_E249_K1.2880.93
16_I25_L1.2870.93
555_L584_Y1.2860.93
208_G212_K1.2840.93
91_L163_V1.2810.92
466_S485_V1.2790.92
477_D572_E1.2710.92
316_P319_G1.2700.92
582_E586_K1.2680.92
312_V321_M1.2680.92
212_K216_E1.2630.92
315_D318_S1.2620.92
119_L123_E1.2590.92
249_K397_K1.2570.92
24_A185_I1.2480.91
420_A431_W1.2460.91
366_E419_D1.2420.91
120_T123_E1.2420.91
522_W525_P1.2320.91
9_Y25_L1.2270.91
67_I78_E1.2250.91
365_L387_H1.2210.91
349_L352_L1.2170.90
327_L345_V1.2060.90
13_L22_L1.2040.90
517_M542_H1.2030.90
131_V166_V1.1970.90
275_I296_V1.1950.90
50_W56_Y1.1920.89
313_A343_Y1.1920.89
259_Y408_G1.1920.89
492_E495_D1.1840.89
247_I413_V1.1780.89
494_L562_F1.1760.89
256_I387_H1.1730.89
68_K72_I1.1720.89
25_L28_D1.1640.88
349_L382_V1.1620.88
497_L500_K1.1600.88
240_R268_I1.1570.88
396_L413_V1.1560.88
93_E97_R1.1540.88
85_Y457_K1.1470.88
390_A395_D1.1430.87
346_N383_K1.1420.87
538_I553_A1.1390.87
324_F329_H1.1380.87
404_I444_D1.1370.87
420_A481_S1.1370.87
134_T146_L1.1310.87
230_G236_M1.1300.87
354_Y357_D1.1280.87
249_K254_N1.1240.86
290_P330_R1.1240.86
6_I165_F1.1220.86
167_E457_K1.1210.86
482_V557_I1.1200.86
396_L399_F1.1190.86
437_D561_R1.1140.86
12_K28_D1.1140.86
316_P380_D1.1110.86
482_V497_L1.1090.86
48_K52_D1.1090.86
569_K573_D1.1050.86
270_K273_D1.1020.85
314_I346_N1.0990.85
324_F330_R1.0980.85
438_Y448_L1.0880.85
460_R487_S1.0860.85
388_I411_V1.0860.85
528_V571_P1.0830.84
16_I20_L1.0830.84
312_V348_F1.0820.84
237_L280_R1.0810.84
280_R488_G1.0740.84
211_A214_I1.0690.84
481_S542_H1.0690.84
124_V150_L1.0680.84
444_D534_S1.0680.84
80_S83_N1.0670.83
27_A187_F1.0620.83
245_E248_L1.0600.83
495_D499_K1.0590.83
473_N478_S1.0580.83
247_I250_K1.0580.83
211_A215_V1.0550.83
526_V571_P1.0470.82
5_V8_E1.0450.82
320_E407_G1.0440.82
233_I536_I1.0440.82
582_E585_N1.0390.82
192_S195_E1.0390.82
200_A210_I1.0340.81
468_L481_S1.0340.81
259_Y406_E1.0320.81
446_V524_E1.0290.81
456_G468_L1.0280.81
191_Q195_E1.0260.81
266_A311_I1.0250.81
400_F411_V1.0220.81
204_R209_N1.0210.81
11_D157_L1.0180.80
456_G460_R1.0130.80
160_K278_F1.0070.80
409_E433_K0.9980.79
184_A277_I0.9970.79
127_T130_K0.9970.79
486_A493_Q0.9950.79
414_K447_D0.9880.78
312_V437_D0.9860.78
525_P554_G0.9850.78
562_F565_W0.9840.78
436_R444_D0.9810.78
528_V574_A0.9800.78
539_S542_H0.9780.78
539_S558_R0.9710.77
93_E96_R0.9710.77
268_I311_I0.9690.77
348_F383_K0.9680.77
51_P147_L0.9680.77
386_H402_R0.9680.77
226_K277_I0.9660.77
460_R465_S0.9630.77
539_S554_G0.9610.76
555_L581_L0.9600.76
388_I402_R0.9590.76
330_R333_K0.9590.76
324_F327_L0.9580.76
291_D330_R0.9570.76
315_D322_R0.9570.76
444_D536_I0.9570.76
473_N477_D0.9560.76
268_I275_I0.9540.76
268_I296_V0.9520.76
271_K354_Y0.9480.75
85_Y91_L0.9450.75
67_I91_L0.9450.75
33_S37_I0.9440.75
93_E460_R0.9430.75
579_E583_M0.9420.75
465_S487_S0.9420.75
39_D44_I0.9400.75
202_N206_D0.9390.75
469_M485_V0.9340.74
316_P364_P0.9320.74
539_S561_R0.9320.74
472_Y479_F0.9300.74
29_L41_V0.9300.74
7_A10_F0.9290.74
506_R522_W0.9270.74
455_Y521_I0.9210.73
191_Q196_I0.9200.73
46_Q176_D0.9190.73
131_V146_L0.9180.73
500_K527_Y0.9160.73
280_R566_R0.9130.73
539_S559_F0.9090.72
209_N213_I0.9080.72
493_Q496_E0.9080.72
227_P337_Y0.9050.72
13_L174_I0.9030.72
224_T268_I0.9010.72
230_G276_F0.9000.72
28_D31_S0.8950.71
131_V143_K0.8910.71
167_E233_I0.8880.71
465_S486_A0.8840.70
305_F355_Y0.8840.70
305_F376_V0.8830.70
30_L223_K0.8760.70
454_F519_P0.8750.69
319_G383_K0.8720.69
249_K253_G0.8620.68
266_A347_V0.8620.68
328_M331_K0.8620.68
354_Y359_D0.8610.68
24_A223_K0.8600.68
183_M214_I0.8600.68
201_Y306_I0.8600.68
438_Y534_S0.8570.68
303_K357_D0.8560.68
292_V296_V0.8560.68
134_T402_R0.8550.68
313_A345_V0.8540.68
315_D320_E0.8520.67
127_T153_K0.8520.67
120_T377_K0.8500.67
314_I321_M0.8490.67
318_S321_M0.8460.67
334_S339_A0.8430.67
70_I81_V0.8430.67
148_A166_V0.8390.66
122_D126_S0.8360.66
313_A399_F0.8360.66
381_Y395_D0.8350.66
248_L252_G0.8340.66
338_E341_K0.8290.65
349_L376_V0.8270.65
89_G458_G0.8210.64
378_P386_H0.8180.64
454_F520_D0.8160.64
403_A436_R0.8120.64
289_Y328_M0.8110.64
489_F501_L0.8090.63
454_F484_K0.8050.63
67_I82_E0.8040.63
267_Q559_F0.8030.63
378_P383_K0.8020.63
484_K569_K0.8010.63
295_Y374_S0.8000.62
454_F466_S0.8000.62
481_S543_T0.7970.62
207_L211_A0.7950.62
542_H556_S0.7950.62
400_F436_R0.7920.62
8_E15_K0.7910.62
9_Y565_W0.7900.61
96_R100_S0.7890.61
6_I121_V0.7860.61
45_I557_I0.7860.61
265_R488_G0.7830.61
6_I29_L0.7820.61
400_F434_L0.7810.61
486_A517_M0.7800.60
258_D369_R0.7780.60
130_K146_L0.7770.60
496_E500_K0.7770.60
236_M542_H0.7760.60
296_V386_H0.7750.60
370_K373_E0.7750.60
121_V125_Y0.7750.60
10_F17_S0.7740.60
454_F486_A0.7740.60
521_I542_H0.7710.60
324_F530_E0.7690.59
326_E343_Y0.7680.59
376_V384_I0.7680.59
296_V347_V0.7680.59
204_R210_I0.7670.59
69_A73_A0.7660.59
121_V124_V0.7660.59
327_L330_R0.7650.59
67_I81_V0.7650.59
23_T181_D0.7640.59
240_R434_L0.7630.59
310_E409_E0.7620.59
217_K224_T0.7620.59
158_E286_T0.7610.59
8_E364_P0.7600.58
452_G468_L0.7580.58
307_I450_V0.7570.58
10_F15_K0.7570.58
238_A456_G0.7560.58
124_V495_D0.7560.58
233_I353_M0.7550.58
171_R458_G0.7550.58
528_V569_K0.7540.58
44_I47_G0.7540.58
538_I584_Y0.7520.58
124_V376_V0.7510.58
283_E330_R0.7510.58
69_A228_Q0.7500.57
409_E435_K0.7500.57
310_E433_K0.7500.57
329_H343_Y0.7490.57
117_E153_K0.7480.57
12_K25_L0.7480.57
73_A147_L0.7470.57
260_K310_E0.7460.57
23_T185_I0.7460.57
484_K491_D0.7450.57
136_G143_K0.7450.57
370_K411_V0.7440.57
238_A412_M0.7420.57
280_R456_G0.7410.57
83_N314_I0.7410.57
44_I165_F0.7400.56
73_A152_K0.7400.56
260_K414_K0.7400.56
169_R457_K0.7370.56
179_V182_A0.7360.56
142_L145_R0.7350.56
365_L412_M0.7330.56
349_L535_E0.7320.56
64_K407_G0.7310.56
489_F494_L0.7310.56
103_Q459_K0.7280.55
38_I43_Y0.7280.55
127_T149_G0.7270.55
77_D83_N0.7260.55
132_A136_G0.7260.55
8_E130_K0.7230.55
485_V517_M0.7230.55
264_E328_M0.7230.55
273_D303_K0.7230.55
388_I392_N0.7230.55
71_S81_V0.7230.55
237_L488_G0.7220.55
346_N381_Y0.7210.55
352_L360_Y0.7180.54
364_P531_I0.7180.54
245_E393_V0.7180.54
492_E496_E0.7180.54
500_K504_I0.7180.54
89_G171_R0.7170.54
170_L304_E0.7160.54
267_Q279_S0.7160.54
288_Q345_V0.7150.54
266_A292_V0.7150.54
75_N126_S0.7150.54
489_F562_F0.7140.54
312_V345_V0.7140.54
456_G484_K0.7130.54
415_A430_L0.7120.54
325_Q537_T0.7110.53
319_G379_N0.7070.53
145_R148_A0.7070.53
183_M186_A0.7060.53
536_I584_Y0.7060.53
367_A371_L0.7050.53
390_A396_L0.7050.53
534_S561_R0.7040.53
431_W569_K0.7030.53
470_A572_E0.6990.52
260_K409_E0.6980.52
398_S573_D0.6980.52
533_G536_I0.6980.52
500_K536_I0.6960.52
201_Y207_L0.6960.52
285_I288_Q0.6940.52
458_G554_G0.6930.52
149_G524_E0.6910.51
437_D533_G0.6910.51
120_T147_L0.6880.51
554_G566_R0.6870.51
260_K433_K0.6860.51
329_H411_V0.6850.51
121_V296_V0.6840.51
65_F396_L0.6810.50
86_K394_E0.6800.50
27_A186_A0.6800.50
239_E430_L0.6800.50
362_T421_I0.6790.50
84_L97_R0.6780.50
71_S78_E0.6770.50
43_Y183_M0.6770.50
360_Y371_L0.6770.50
92_G160_K0.6760.50
206_D211_A0.6760.50
123_E499_K0.6760.50
70_I159_A0.6750.50
63_E289_Y0.6740.50
144_I148_A0.6740.50
229_V271_K0.6740.50
196_I306_I0.6720.49
64_K557_I0.6700.49
450_V562_F0.6680.49
384_I399_F0.6660.49
124_V360_Y0.6660.49
104_S115_S0.6660.49
363_K370_K0.6650.49
266_A312_V0.6640.49
23_T213_I0.6640.49
367_A401_Y0.6640.49
498_Q501_L0.6640.49
306_I354_Y0.6620.48
85_Y88_I0.6620.48
192_S196_I0.6610.48
484_K561_R0.6600.48
167_E556_S0.6580.48
247_I356_E0.6580.48
261_Y444_D0.6580.48
53_F92_G0.6570.48
325_Q444_D0.6570.48
128_L167_E0.6540.48
72_I221_A0.6530.47
22_L174_I0.6520.47
96_R160_K0.6500.47
8_E12_K0.6500.47
362_T391_N0.6480.47
297_S384_I0.6470.47
484_K517_M0.6460.47
147_L166_V0.6450.47
238_A403_A0.6450.47
365_L369_R0.6440.47
453_G518_E0.6430.46
295_Y311_I0.6410.46
259_Y327_L0.6410.46
124_V128_L0.6400.46
298_K377_K0.6400.46
88_I93_E0.6390.46
51_P62_G0.6390.46
274_K303_K0.6390.46
126_S130_K0.6380.46
238_A460_R0.6370.46
11_D14_E0.6360.46
39_D212_K0.6360.46
199_R221_A0.6350.46
66_L167_E0.6350.46
212_K413_V0.6330.45
232_P333_K0.6330.45
362_T370_K0.6320.45
173_G237_L0.6310.45
263_G435_K0.6310.45
358_V478_S0.6300.45
280_R308_E0.6300.45
20_L540_P0.6290.45
462_G520_D0.6280.45
234_R282_L0.6280.45
265_R308_E0.6270.45
335_D338_E0.6270.45
176_D353_M0.6270.45
149_G496_E0.6260.45
469_M521_I0.6260.45
275_I292_V0.6250.45
233_I556_S0.6250.45
5_V29_L0.6240.44
363_K379_N0.6230.44
154_A158_E0.6230.44
37_I467_L0.6230.44
15_K24_A0.6210.44
11_D15_K0.6210.44
238_A265_R0.6200.44
53_F61_I0.6200.44
260_K447_D0.6200.44
456_G486_A0.6180.44
400_F438_Y0.6180.44
536_I557_I0.6180.44
254_N419_D0.6170.44
167_E264_E0.6170.44
269_H306_I0.6170.44
232_P456_G0.6160.44
357_D360_Y0.6160.44
153_K306_I0.6160.44
69_A470_A0.6140.43
208_G473_N0.6140.43
82_E86_K0.6130.43
237_L308_E0.6130.43
224_T229_V0.6120.43
471_A536_I0.6110.43
485_V533_G0.6100.43
468_L486_A0.6100.43
375_I379_N0.6080.43
6_I470_A0.6080.43
455_Y464_I0.6080.43
499_K502_M0.6080.43
232_P330_R0.6070.43
78_E82_E0.6070.43
296_V382_V0.6050.43
90_D332_R0.6040.42
236_M494_L0.6040.42
399_F411_V0.6030.42
13_L404_I0.6020.42
426_A429_W0.6020.42
239_E429_W0.6020.42
438_Y452_G0.6020.42
486_A520_D0.6010.42
237_L566_R0.6010.42
146_L162_L0.6000.42
92_G159_A0.6000.42
263_G409_E0.6000.42
398_S402_R0.6000.42
364_P403_A0.5990.42
227_P565_W0.5980.42
70_I74_T0.5970.42
8_E294_D0.5960.42
471_A580_I0.5960.42
256_I389_Q0.5950.42
71_S82_E0.5940.41
165_F247_I0.5940.41
327_L574_A0.5940.41
241_L244_P0.5930.41
240_R579_E0.5900.41
312_V453_G0.5900.41
99_K102_Q0.5900.41
187_F214_I0.5890.41
263_G433_K0.5880.41
242_S246_E0.5880.41
280_R427_R0.5870.41
79_N83_N0.5870.41
505_K521_I0.5860.41
578_D581_L0.5860.41
280_R458_G0.5850.41
288_Q529_A0.5850.41
227_P538_I0.5830.40
395_D399_F0.5820.40
337_Y341_K0.5810.40
525_P536_I0.5800.40
32_K296_V0.5800.40
73_A95_A0.5800.40
50_W53_F0.5790.40
89_G558_R0.5780.40
467_L529_A0.5770.40
30_L423_Q0.5760.40
70_I362_T0.5760.40
158_E557_I0.5750.40
61_I162_L0.5740.39
96_R353_M0.5740.39
243_N247_I0.5730.39
119_L427_R0.5720.39
329_H339_A0.5720.39
530_E569_K0.5720.39
232_P237_L0.5720.39
369_R387_H0.5710.39
483_C556_S0.5710.39
193_A196_I0.5700.39
8_E104_S0.5680.39
500_K526_V0.5680.39
260_K263_G0.5670.39
386_H399_F0.5670.39
127_T578_D0.5670.39
334_S524_E0.5670.39
279_S343_Y0.5660.39
277_I293_V0.5650.39
449_V493_Q0.5640.38
191_Q194_S0.5640.38
427_R567_D0.5630.38
45_I146_L0.5630.38
7_A157_L0.5620.38
558_R580_I0.5620.38
446_V471_A0.5610.38
336_I339_A0.5610.38
309_G349_L0.5610.38
214_I217_K0.5610.38
291_D345_V0.5590.38
463_K495_D0.5590.38
252_G307_I0.5570.38
273_D307_I0.5570.38
247_I251_M0.5570.38
88_I506_R0.5560.38
213_I217_K0.5560.38
70_I128_L0.5550.38
171_R182_A0.5540.37
95_A121_V0.5540.37
492_E570_S0.5540.37
256_I369_R0.5540.37
517_M543_T0.5540.37
17_S576_T0.5530.37
311_I327_L0.5520.37
308_E420_A0.5520.37
460_R554_G0.5520.37
130_K135_T0.5520.37
258_D414_K0.5510.37
217_K221_A0.5500.37
43_Y125_Y0.5480.37
425_G553_A0.5470.37
362_T378_P0.5470.37
72_I383_K0.5460.37
264_E466_S0.5460.37
573_D577_T0.5460.37
183_M578_D0.5450.37
13_L26_L0.5450.37
262_D414_K0.5450.37
168_G466_S0.5450.37
200_A207_L0.5440.36
232_P458_G0.5440.36
504_I527_Y0.5440.36
44_I48_K0.5430.36
447_D568_D0.5430.36
131_V135_T0.5430.36
77_D80_S0.5420.36
8_E503_E0.5420.36
331_K556_S0.5420.36
502_M505_K0.5420.36
458_G465_S0.5400.36
324_F559_F0.5390.36
198_E204_R0.5390.36
278_F515_S0.5390.36
243_N364_P0.5350.36
235_P264_E0.5350.36
248_L347_V0.5350.36
362_T419_D0.5340.36
412_M563_I0.5340.36
275_I346_N0.5320.35
12_K157_L0.5320.35
67_I335_D0.5310.35
270_K304_E0.5310.35
195_E293_V0.5300.35
233_I354_Y0.5300.35
453_G523_V0.5290.35
38_I45_I0.5290.35
199_R203_L0.5290.35
250_K412_M0.5290.35
178_T202_N0.5280.35
14_E92_G0.5270.35
365_L423_Q0.5270.35
310_E414_K0.5270.35
369_R384_I0.5270.35
256_I366_E0.5250.35
275_I297_S0.5250.35
253_G303_K0.5250.35
213_I218_G0.5240.35
367_A387_H0.5230.34
194_S308_E0.5230.34
292_V423_Q0.5230.34
12_K18_S0.5230.34
21_Q391_N0.5220.34
539_S566_R0.5220.34
403_A411_V0.5220.34
264_E533_G0.5220.34
185_I193_A0.5220.34
303_K578_D0.5220.34
147_L180_L0.5220.34
16_I156_P0.5210.34
10_F14_E0.5210.34
237_L458_G0.5200.34
143_K161_F0.5200.34
131_V342_E0.5190.34
468_L522_W0.5190.34
294_D419_D0.5190.34
289_Y327_L0.5190.34
308_E431_W0.5180.34
256_I373_E0.5180.34
468_L520_D0.5170.34
529_A565_W0.5170.34
327_L453_G0.5160.34
391_N582_E0.5160.34
252_G391_N0.5160.34
74_T168_G0.5160.34
195_E424_A0.5160.34
201_Y204_R0.5160.34
159_A200_A0.5160.34
304_E356_E0.5150.34
283_E324_F0.5150.34
258_D447_D0.5150.34
198_E202_N0.5140.34
51_P269_H0.5140.34
385_A421_I0.5130.34
334_S477_D0.5130.34
171_R456_G0.5130.34
162_L228_Q0.5100.33
18_S276_F0.5100.33
554_G569_K0.5100.33
278_F385_A0.5100.33
68_K389_Q0.5100.33
237_L431_W0.5090.33
241_L413_V0.5090.33
262_D310_E0.5080.33
19_R178_T0.5070.33
132_A279_S0.5070.33
247_I434_L0.5060.33
146_L150_L0.5060.33
301_E463_K0.5060.33
129_S307_I0.5060.33
177_A198_E0.5060.33
131_V136_G0.5060.33
130_K133_L0.5060.33
194_S197_I0.5050.33
476_T572_E0.5040.33
472_Y528_V0.5040.33
174_I466_S0.5040.33
460_R493_Q0.5030.33
224_T323_P0.5030.33
409_E414_K0.5030.33
128_L166_V0.5030.33
238_A458_G0.5030.33
26_L202_N0.5030.33
217_K297_S0.5020.33
310_E435_K0.5000.32
17_S25_L0.5000.32
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2hivA 1 0.9584 100 0.191 Contact Map
1x9nA 1 0.9484 100 0.228 Contact Map
2cfmA 1 0.9318 100 0.232 Contact Map
3gdeA 1 0.9085 100 0.245 Contact Map
3w1bA 1 0.9002 100 0.252 Contact Map
3l2pA 1 0.8686 100 0.279 Contact Map
1vs0A 1 0.5008 100 0.578 Contact Map
1a0iA 1 0.4908 100 0.637 Contact Map
4pz7A 1 0.5358 100 0.665 Contact Map
1p16A 1 0.5591 100 0.666 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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