Q980T5 - SULSO - GREMLIN Contacts

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Q980T5 - Glutaredoxin related protein

UniProt:	Q980T5	Sequences: MEQEYAELFSDEVKNALQDALKDMKNPVDVYVFVDNTDSNCQYCGVTTKFLEFMASAAPKDSNGSLLKVHIVDRANENSRKIFEEFNVERVPTVAFYNGYIRWTGAPLGEEIRALVETIVRLSQGESGLSQETVEAIKSKLNGKVKIETVVTPSCPYCPYAALMAHMVAFEACRAGKCNVISEVIEAYENQDIAEKYQVMSVPAIAINESIEFIGVPYEENFINAILEKQKIS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	233 (196)
Sequences:	1176 (812)
Seq/√Len:	58.0

SULSO - Q980T5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
118_T	123_S	4.063	1.00
147_I	165_A	3.948	1.00
129_L	148_E	3.547	1.00
60_K	113_R	3.311	1.00
147_I	205_I	3.297	1.00
119_I	124_Q	3.080	1.00
117_E	121_R	2.973	1.00
114_A	118_T	2.774	1.00
216_V	221_N	2.736	1.00
155_C	158_C	2.691	1.00
30_V	35_D	2.526	1.00
206_A	212_E	2.509	1.00
129_L	183_E	2.442	1.00
81_K	84_E	2.386	1.00
168_V	222_F	2.323	1.00
30_V	34_V	2.305	1.00
218_Y	221_N	2.286	1.00
162_A	166_H	2.260	1.00
128_G	184_V	2.186	1.00
157_Y	217_P	2.094	1.00
118_T	124_Q	2.005	1.00
164_M	219_E	1.958	1.00
222_F	226_I	1.924	1.00
96_F	119_I	1.879	1.00
32_V	35_D	1.872	1.00
67_L	71_I	1.852	1.00
168_V	219_E	1.760	0.99
150_V	187_A	1.756	0.99
61_D	117_E	1.754	0.99
197_Y	208_N	1.752	0.99
31_Y	35_D	1.730	0.99
151_V	184_V	1.729	0.99
161_A	222_F	1.681	0.99
69_V	73_D	1.669	0.99
153_P	188_Y	1.607	0.99
54_M	112_I	1.606	0.99
164_M	167_M	1.600	0.99
133_T	136_A	1.593	0.99
116_V	120_V	1.585	0.99
157_Y	201_S	1.576	0.98
174_R	177_K	1.575	0.98
149_T	184_V	1.564	0.98
134_V	138_K	1.548	0.98
144_K	181_I	1.525	0.98
31_Y	34_V	1.479	0.98
125_G	132_E	1.471	0.98
191_Q	194_A	1.453	0.97
180_V	226_I	1.427	0.97
152_T	188_Y	1.417	0.97
150_V	199_V	1.412	0.97
130_S	133_T	1.405	0.97
134_V	150_V	1.392	0.97
24_M	30_V	1.365	0.96
149_T	205_I	1.336	0.96
164_M	218_Y	1.314	0.95
149_T	162_A	1.313	0.95
24_M	32_V	1.305	0.95
146_K	183_E	1.293	0.95
147_I	182_S	1.291	0.95
145_V	207_I	1.291	0.95
149_T	161_A	1.268	0.94
152_T	159_P	1.253	0.94
174_R	223_I	1.247	0.94
67_L	73_D	1.237	0.93
160_Y	164_M	1.232	0.93
108_L	111_E	1.231	0.93
168_V	182_S	1.198	0.92
70_H	73_D	1.191	0.92
134_V	139_S	1.189	0.92
213_F	221_N	1.151	0.91
92_P	96_F	1.125	0.90
187_A	194_A	1.116	0.89
186_E	189_E	1.114	0.89
152_T	156_P	1.112	0.89
153_P	186_E	1.111	0.89
171_E	223_I	1.111	0.89
94_V	112_I	1.111	0.89
146_K	181_I	1.109	0.89
201_S	217_P	1.075	0.87
49_K	53_F	1.070	0.87
187_A	199_V	1.068	0.87
169_A	182_S	1.064	0.87
161_A	164_M	1.064	0.87
52_E	55_A	1.055	0.86
57_A	113_R	1.052	0.86
126_E	130_S	1.049	0.86
49_K	52_E	1.049	0.86
149_T	158_C	1.043	0.86
129_L	133_T	1.036	0.85
29_D	32_V	1.026	0.85
31_Y	36_N	1.026	0.85
165_A	226_I	1.019	0.85
219_E	222_F	1.018	0.84
94_V	98_N	1.014	0.84
33_F	36_N	1.004	0.84
155_C	201_S	0.996	0.83
109_G	113_R	0.979	0.82
174_R	227_L	0.977	0.82
152_T	155_C	0.971	0.82
79_S	82_I	0.968	0.81
152_T	163_L	0.958	0.81
152_T	157_Y	0.952	0.80
162_A	184_V	0.944	0.80
91_V	97_Y	0.932	0.79
175_A	178_C	0.929	0.79
126_E	183_E	0.925	0.78
133_T	137_I	0.923	0.78
156_P	217_P	0.913	0.77
193_I	196_K	0.912	0.77
194_A	197_Y	0.910	0.77
133_T	138_K	0.908	0.77
135_E	196_K	0.906	0.77
53_F	56_S	0.893	0.76
119_I	125_G	0.892	0.76
138_K	141_L	0.888	0.75
187_A	202_V	0.887	0.75
126_E	134_V	0.886	0.75
157_Y	187_A	0.886	0.75
92_P	97_Y	0.885	0.75
145_V	179_N	0.885	0.75
156_P	161_A	0.877	0.74
130_S	138_K	0.877	0.74
205_I	217_P	0.876	0.74
126_E	169_A	0.875	0.74
155_C	204_A	0.872	0.74
161_A	168_V	0.870	0.74
156_P	201_S	0.865	0.73
56_S	60_K	0.856	0.73
68_K	73_D	0.854	0.72
165_A	182_S	0.851	0.72
47_T	51_L	0.850	0.72
129_L	138_K	0.849	0.72
167_M	219_E	0.848	0.72
92_P	98_N	0.843	0.71
130_S	190_N	0.835	0.71
161_A	217_P	0.830	0.70
106_A	111_E	0.825	0.70
122_L	190_N	0.817	0.69
103_W	175_A	0.817	0.69
71_I	74_R	0.817	0.69
156_P	163_L	0.808	0.68
150_V	213_F	0.805	0.68
137_I	142_N	0.792	0.67
136_A	141_L	0.784	0.66
149_T	157_Y	0.781	0.66
152_T	186_E	0.769	0.64
131_Q	193_I	0.765	0.64
131_Q	134_V	0.762	0.64
163_L	217_P	0.761	0.64
65_S	68_K	0.754	0.63
51_L	55_A	0.752	0.63
165_A	169_A	0.752	0.63
152_T	202_V	0.750	0.62
129_L	146_K	0.749	0.62
154_S	159_P	0.748	0.62
223_I	227_L	0.743	0.62
25_K	33_F	0.742	0.62
27_P	31_Y	0.740	0.61
163_L	204_A	0.739	0.61
161_A	182_S	0.738	0.61
159_P	163_L	0.736	0.61
129_L	134_V	0.736	0.61
165_A	205_I	0.736	0.61
51_L	142_N	0.735	0.61
46_V	201_S	0.733	0.61
155_C	202_V	0.732	0.61
197_Y	207_I	0.730	0.60
101_I	105_G	0.729	0.60
115_L	124_Q	0.726	0.60
148_E	187_A	0.720	0.59
132_E	216_V	0.720	0.59
205_I	222_F	0.718	0.59
145_V	178_C	0.715	0.59
72_V	183_E	0.715	0.59
161_A	188_Y	0.714	0.59
88_V	112_I	0.710	0.58
96_F	124_Q	0.706	0.58
117_E	147_I	0.697	0.57
50_F	55_A	0.695	0.57
48_T	52_E	0.694	0.56
133_T	185_I	0.692	0.56
148_E	208_N	0.692	0.56
65_S	73_D	0.691	0.56
148_E	183_E	0.689	0.56
61_D	106_A	0.686	0.56
28_V	31_Y	0.683	0.55
94_V	97_Y	0.681	0.55
117_E	229_K	0.676	0.55
174_R	226_I	0.674	0.54
25_K	28_V	0.674	0.54
221_N	224_N	0.672	0.54
46_V	50_F	0.671	0.54
157_Y	202_V	0.670	0.54
152_T	158_C	0.668	0.54
50_F	108_L	0.667	0.54
206_A	210_S	0.667	0.54
68_K	71_I	0.666	0.53
214_I	228_E	0.658	0.53
73_D	76_N	0.658	0.53
61_D	113_R	0.648	0.51
129_L	181_I	0.645	0.51
70_H	74_R	0.645	0.51
139_S	142_N	0.645	0.51
159_P	217_P	0.644	0.51
26_N	29_D	0.641	0.51
105_G	111_E	0.640	0.51
113_R	117_E	0.635	0.50
135_E	139_S	0.634	0.50
128_G	182_S	0.632	0.50
138_K	146_K	0.630	0.49
26_N	30_V	0.627	0.49
151_V	201_S	0.626	0.49
110_E	143_G	0.626	0.49
25_K	29_D	0.625	0.49
58_A	153_P	0.624	0.49
47_T	50_F	0.623	0.49
83_F	86_F	0.617	0.48
28_V	32_V	0.613	0.48
70_H	79_S	0.610	0.47
211_I	225_A	0.608	0.47
92_P	95_A	0.605	0.47
79_S	142_N	0.604	0.47
182_S	217_P	0.601	0.46
108_L	193_I	0.600	0.46
204_A	217_P	0.599	0.46
24_M	27_P	0.598	0.46
151_V	159_P	0.595	0.46
128_G	149_T	0.590	0.45
69_V	120_V	0.590	0.45
125_G	216_V	0.589	0.45
207_I	228_E	0.585	0.45
29_D	34_V	0.585	0.45
155_C	205_I	0.583	0.44
88_V	109_G	0.583	0.44
46_V	49_K	0.582	0.44
126_E	133_T	0.580	0.44
155_C	199_V	0.577	0.44
155_C	217_P	0.576	0.44
147_I	207_I	0.570	0.43
116_V	124_Q	0.569	0.43
60_K	117_E	0.569	0.43
28_V	33_F	0.567	0.43
124_Q	194_A	0.567	0.43
50_F	54_M	0.565	0.42
134_V	148_E	0.565	0.42
25_K	32_V	0.564	0.42
130_S	134_V	0.561	0.42
154_S	202_V	0.559	0.42
60_K	103_W	0.557	0.41
187_A	190_N	0.557	0.41
149_T	165_A	0.551	0.41
127_S	133_T	0.551	0.41
127_S	205_I	0.549	0.41
36_N	228_E	0.549	0.41
154_S	188_Y	0.547	0.40
135_E	138_K	0.544	0.40
56_S	109_G	0.543	0.40
30_V	33_F	0.543	0.40
129_L	132_E	0.542	0.40
67_L	75_A	0.541	0.40
215_G	221_N	0.540	0.40
54_M	57_A	0.540	0.40
216_V	225_A	0.539	0.40
91_V	108_L	0.537	0.39
29_D	33_F	0.536	0.39
132_E	228_E	0.534	0.39
119_I	122_L	0.533	0.39
31_Y	98_N	0.532	0.39
146_K	209_E	0.532	0.39
166_H	184_V	0.531	0.39
95_A	98_N	0.531	0.39
57_A	65_S	0.530	0.39
166_H	220_E	0.530	0.39
180_V	207_I	0.529	0.39
169_A	227_L	0.527	0.38
89_E	120_V	0.520	0.38
169_A	190_N	0.520	0.38
185_I	194_A	0.517	0.37
43_Y	53_F	0.517	0.37
135_E	175_A	0.517	0.37
157_Y	161_A	0.515	0.37
110_E	225_A	0.515	0.37
31_Y	94_V	0.513	0.37
127_S	218_Y	0.511	0.37
49_K	107_P	0.510	0.37
123_S	178_C	0.510	0.37
50_F	53_F	0.510	0.37
87_N	228_E	0.510	0.37
67_L	121_R	0.505	0.36
92_P	213_F	0.502	0.36
156_P	162_A	0.502	0.36
130_S	141_L	0.501	0.36
165_A	202_V	0.501	0.36
84_E	87_N	0.500	0.36

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3uemA	1	0.9485	100	0.391	Contact Map
3wt1A	1	0.897	100	0.409	Contact Map
2b5eA	1	0.9399	100	0.41	Contact Map
3f8uA	2	0.9657	100	0.426	Contact Map
3apoA	1	0.927	100	0.431	Contact Map
4ekzA	1	0.927	100	0.431	Contact Map
3idvA	1	0.9485	100	0.481	Contact Map
2hlsA	5	0.9528	100	0.485	Contact Map
4tveA	1	0.9227	100	0.493	Contact Map
4tw5A	3	0.9142	100	0.497	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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