Q980T3 - SULSO - GREMLIN Contacts

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Q980T3 - Uncharacterized protein

UniProt:	Q980T3	Sequences: MRTMLTQKFVVDSMLGKIARWLRIMGYDTLYSNDFEDWKILKIAETQKRIIITRDRGIYYRSLKRGLNCILLSPDSNIIQDLAFIALRSKIDLSVNINATRCPQCNSVLSKLSESMWLCPKCKKEYWKGRHWRTIEEIIIKANSELVKLETKNDSRGTGTDTGVKRRDRTVTNRNS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	176 (136)
Sequences:	551 (374)
Seq/√Len:	32.1

SULSO - Q980T3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
40_I	51_I	4.508	1.00
24_I	135_I	2.834	1.00
28_D	49_R	2.797	1.00
37_D	55_D	2.692	1.00
107_S	120_P	2.680	1.00
79_I	141_K	2.516	1.00
104_Q	124_K	2.397	0.99
42_K	46_T	2.293	0.99
103_P	135_I	2.272	0.99
16_G	31_Y	2.251	0.99
11_V	14_M	2.247	0.99
70_I	89_S	2.148	0.99
18_I	85_I	2.032	0.98
10_V	43_I	1.901	0.97
110_S	118_L	1.870	0.96
59_Y	69_C	1.858	0.96
107_S	121_K	1.781	0.95
77_N	80_Q	1.676	0.93
41_L	64_K	1.673	0.93
18_I	52_I	1.669	0.93
17_K	25_M	1.664	0.93
51_I	64_K	1.661	0.93
30_L	47_Q	1.630	0.92
137_E	140_I	1.598	0.92
54_R	75_D	1.556	0.91
110_S	120_P	1.532	0.90
99_A	103_P	1.509	0.89
52_I	85_I	1.505	0.89
53_T	80_Q	1.483	0.88
74_P	84_F	1.477	0.88
55_D	58_I	1.473	0.88
74_P	80_Q	1.471	0.88
128_K	132_W	1.470	0.88
72_L	78_I	1.441	0.87
69_C	73_S	1.421	0.86
44_A	51_I	1.407	0.85
25_M	139_I	1.406	0.85
17_K	31_Y	1.376	0.84
116_M	125_E	1.370	0.84
101_R	126_Y	1.362	0.83
14_M	31_Y	1.325	0.82
27_Y	91_I	1.292	0.80
61_R	71_L	1.279	0.79
16_G	19_A	1.265	0.79
17_K	139_I	1.235	0.77
37_D	131_H	1.220	0.76
62_S	89_S	1.212	0.76
36_E	41_L	1.202	0.75
83_A	125_E	1.198	0.75
15_L	19_A	1.192	0.74
80_Q	83_A	1.184	0.74
25_M	86_A	1.179	0.73
9_F	91_I	1.172	0.73
54_R	84_F	1.163	0.72
39_K	43_I	1.160	0.72
131_H	139_I	1.148	0.71
18_I	49_R	1.143	0.71
109_L	131_H	1.071	0.66
39_K	42_K	1.063	0.65
115_S	128_K	1.062	0.65
29_T	109_L	1.060	0.65
52_I	81_D	1.058	0.65
37_D	109_L	1.050	0.64
7_Q	53_T	1.045	0.64
82_L	120_P	1.043	0.64
15_L	88_R	1.033	0.63
46_T	144_S	1.024	0.62
87_L	113_S	1.011	0.61
101_R	106_N	1.009	0.61
16_G	55_D	1.008	0.61
14_M	21_W	1.005	0.61
109_L	117_W	1.002	0.61
107_S	118_L	0.999	0.61
11_V	52_I	0.997	0.60
18_I	81_D	0.988	0.60
14_M	78_I	0.987	0.60
16_G	37_D	0.982	0.59
30_L	35_F	0.980	0.59
36_E	39_K	0.976	0.59
11_V	31_Y	0.959	0.57
121_K	144_S	0.938	0.56
30_L	43_I	0.923	0.54
120_P	124_K	0.919	0.54
68_N	90_K	0.918	0.54
85_I	116_M	0.912	0.54
118_L	123_K	0.908	0.53
28_D	106_N	0.904	0.53
24_I	103_P	0.902	0.53
10_V	51_I	0.899	0.52
119_C	122_C	0.883	0.51
6_T	90_K	0.879	0.51
128_K	136_E	0.879	0.51
114_E	120_P	0.879	0.51
26_G	101_R	0.875	0.50
89_S	98_N	0.867	0.50
96_N	143_N	0.866	0.50
13_S	40_I	0.864	0.50
104_Q	131_H	0.861	0.49
73_S	84_F	0.859	0.49
103_P	124_K	0.852	0.49
70_I	100_T	0.847	0.48
14_M	70_I	0.833	0.47
69_C	98_N	0.827	0.47
20_R	104_Q	0.824	0.46
107_S	124_K	0.812	0.45
54_R	74_P	0.808	0.45
24_I	82_L	0.803	0.45
87_L	142_A	0.798	0.44
108_V	120_P	0.797	0.44
70_I	73_S	0.792	0.44
64_K	99_A	0.780	0.43
49_R	106_N	0.772	0.42
134_T	137_E	0.772	0.42
20_R	134_T	0.766	0.42
90_K	94_S	0.752	0.41
31_Y	37_D	0.747	0.40
42_K	140_I	0.744	0.40
33_N	43_I	0.742	0.40
82_L	142_A	0.738	0.39
37_D	135_I	0.737	0.39
17_K	109_L	0.734	0.39
14_M	69_C	0.725	0.38
112_L	116_M	0.717	0.38
59_Y	78_I	0.714	0.38
14_M	55_D	0.711	0.37
17_K	77_N	0.710	0.37
19_A	139_I	0.699	0.36
51_I	58_I	0.698	0.36
29_T	89_S	0.692	0.36
19_A	31_Y	0.688	0.36
74_P	141_K	0.688	0.36
11_V	93_L	0.682	0.35
47_Q	144_S	0.682	0.35
10_V	123_K	0.679	0.35
18_I	82_L	0.677	0.35
115_S	140_I	0.677	0.35
8_K	21_W	0.676	0.35
70_I	130_R	0.673	0.34
91_I	98_N	0.666	0.34
38_W	144_S	0.665	0.34
117_W	123_K	0.663	0.34
20_R	78_I	0.663	0.34
108_V	133_R	0.662	0.34
38_W	86_A	0.658	0.33
22_L	27_Y	0.655	0.33
40_I	62_S	0.646	0.32
21_W	132_W	0.645	0.32
42_K	94_S	0.641	0.32
37_D	40_I	0.640	0.32
53_T	59_Y	0.639	0.32
111_K	141_K	0.628	0.31
27_Y	85_I	0.625	0.31
11_V	34_D	0.622	0.31
43_I	83_A	0.619	0.31
29_T	143_N	0.619	0.31
11_V	24_I	0.613	0.30
94_S	141_K	0.612	0.30
81_D	116_M	0.611	0.30
99_A	130_R	0.610	0.30
48_K	111_K	0.608	0.30
42_K	63_L	0.601	0.29
59_Y	73_S	0.589	0.29
36_E	113_S	0.586	0.28
136_E	141_K	0.586	0.28
10_V	95_V	0.583	0.28
117_W	132_W	0.582	0.28
86_A	92_D	0.580	0.28
109_L	124_K	0.577	0.28
57_G	121_K	0.577	0.28
60_Y	99_A	0.576	0.28
43_I	114_E	0.576	0.28
32_S	35_F	0.576	0.28
98_N	124_K	0.574	0.28
64_K	81_D	0.572	0.27
9_F	55_D	0.570	0.27
20_R	86_A	0.569	0.27
19_A	114_E	0.567	0.27
118_L	141_K	0.559	0.27
72_L	114_E	0.558	0.26
27_Y	130_R	0.557	0.26
36_E	43_I	0.552	0.26
50_I	125_E	0.549	0.26
96_N	124_K	0.546	0.26
75_D	110_S	0.545	0.26
70_I	88_R	0.539	0.25
81_D	84_F	0.539	0.25
14_M	98_N	0.537	0.25
44_A	63_L	0.536	0.25
130_R	133_R	0.535	0.25
75_D	100_T	0.535	0.25
89_S	101_R	0.532	0.25
38_W	111_K	0.525	0.24
59_Y	71_L	0.524	0.24
18_I	142_A	0.522	0.24
46_T	94_S	0.520	0.24
72_L	142_A	0.515	0.24
104_Q	126_Y	0.509	0.23
41_L	45_E	0.508	0.23
21_W	130_R	0.506	0.23
114_E	133_R	0.506	0.23
91_I	116_M	0.505	0.23
31_Y	55_D	0.502	0.23
86_A	142_A	0.501	0.23
70_I	84_F	0.500	0.23

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ga8A	1	0.2784	96.3	0.886	Contact Map
2lcqA	1	0.6477	94.4	0.9	Contact Map
3j20Y	1	0.2727	92.2	0.908	Contact Map
3o9xA	2	0.4432	84.1	0.92	Contact Map
1k82A	1	0.6818	83.9	0.921	Contact Map
2k4xA	1	0.3011	81.4	0.923	Contact Map
2d5bA	1	0.7898	77.5	0.926	Contact Map
3ziuA	1	0.7557	75.6	0.927	Contact Map
4arcA	1	0.6761	75.2	0.927	Contact Map
2v0cA	1	0.7159	73.7	0.928	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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