Q980S5 - SULSO - GREMLIN Contacts

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Q980S5 - D-arabino 3-hexulose 6-phosphate formaldehyde lyase (HpS-2)

UniProt:	Q980S5	Sequences: MREVLLEKLRTEKFLQIALDFIDINDAIKVVNEVKDLENEIIEIGTPLLKSFGIEGIRKIKSLVPDKIIVADTKTADAGDVEVEIAKLGGAHIMTVLGIMDDSTIYSAVKKARELDILVQADLINVKNVYERSKELKQLGVDIIGFHVGLDVQKSRGISVADLKNEIRKVSELNLIISIAGGLNKDRILELIDLPVSIYVVGGAITRSKEPKNVSKEIVNILKGR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	225 (206)
Sequences:	3248 (2086)
Seq/√Len:	145.4

ECOLI - SGBH ULAD PYRF
BACSU - HPS PYRF
SULSO - Q980S5 PYRF

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
32_N	63_L	3.754	1.00
23_D	26_D	3.496	1.00
210_E	213_N	3.384	1.00
98_G	120_Q	3.340	1.00
61_K	92_H	3.116	1.00
100_M	104_T	2.454	1.00
128_N	131_E	2.359	1.00
212_K	216_K	2.294	1.00
55_E	58_R	2.291	1.00
128_N	183_L	2.276	1.00
189_L	221_I	2.241	1.00
167_I	171_S	2.217	1.00
28_I	59_K	2.215	1.00
102_D	106_Y	2.200	1.00
213_N	217_E	2.162	1.00
102_D	135_E	2.132	1.00
208_S	214_V	2.094	1.00
164_K	186_D	2.076	1.00
109_V	113_R	2.035	1.00
15_L	201_V	2.015	1.00
105_I	157_G	1.934	1.00
24_I	59_K	1.930	1.00
189_L	193_D	1.928	1.00
46_T	50_K	1.926	1.00
103_S	183_L	1.916	1.00
168_R	171_S	1.892	1.00
167_I	172_E	1.815	1.00
37_L	216_K	1.765	1.00
130_Y	141_V	1.705	1.00
186_D	194_L	1.681	1.00
140_G	143_I	1.648	1.00
83_V	86_A	1.637	1.00
21_F	30_V	1.627	1.00
130_Y	134_K	1.586	1.00
168_R	172_E	1.577	1.00
24_I	56_G	1.558	1.00
171_S	197_S	1.543	1.00
190_E	193_D	1.531	1.00
196_V	199_Y	1.506	1.00
16_Q	41_I	1.501	1.00
30_V	34_V	1.497	1.00
29_K	33_E	1.480	1.00
24_I	52_F	1.478	1.00
68_I	92_H	1.447	1.00
75_T	86_A	1.447	1.00
26_D	29_K	1.442	1.00
84_E	114_E	1.436	1.00
44_I	60_I	1.435	1.00
15_L	215_S	1.431	1.00
50_K	75_T	1.426	1.00
103_S	106_Y	1.388	1.00
15_L	222_L	1.352	1.00
33_E	211_P	1.348	1.00
102_D	155_S	1.341	1.00
171_S	177_I	1.336	1.00
59_K	62_S	1.318	1.00
102_D	151_D	1.307	1.00
102_D	154_K	1.295	1.00
139_L	147_H	1.294	1.00
190_E	194_L	1.288	1.00
106_Y	110_K	1.284	1.00
18_A	202_G	1.281	1.00
42_I	67_K	1.267	1.00
31_V	42_I	1.261	1.00
48_L	52_F	1.257	1.00
177_I	197_S	1.255	1.00
27_A	48_L	1.255	1.00
33_E	210_E	1.245	1.00
58_R	62_S	1.241	1.00
150_L	173_L	1.236	1.00
139_L	143_I	1.216	1.00
213_N	216_K	1.193	1.00
39_N	215_S	1.190	1.00
179_I	196_V	1.183	1.00
24_I	28_I	1.177	1.00
17_I	206_T	1.174	1.00
95_T	119_V	1.174	1.00
111_K	115_L	1.173	1.00
16_Q	198_I	1.171	1.00
216_K	220_N	1.169	1.00
217_E	220_N	1.168	1.00
17_I	39_N	1.144	0.99
169_K	173_L	1.144	0.99
51_S	85_I	1.135	0.99
48_L	56_G	1.132	0.99
82_E	108_A	1.128	0.99
82_E	104_T	1.128	0.99
217_E	221_I	1.125	0.99
170_V	177_I	1.117	0.99
123_L	144_I	1.117	0.99
33_E	212_K	1.097	0.99
117_I	176_I	1.095	0.99
119_V	157_G	1.090	0.99
22_I	26_D	1.083	0.99
40_E	67_K	1.081	0.99
176_I	197_S	1.081	0.99
146_F	173_L	1.079	0.99
41_I	68_I	1.079	0.99
83_V	94_M	1.079	0.99
214_V	217_E	1.072	0.99
79_G	104_T	1.062	0.99
95_T	121_A	1.039	0.99
160_V	175_L	1.036	0.99
192_I	222_L	1.036	0.99
75_T	82_E	1.028	0.99
36_D	212_K	1.020	0.99
107_S	110_K	1.014	0.99
132_R	136_L	1.007	0.99
192_I	199_Y	1.004	0.99
123_L	127_K	0.997	0.99
57_I	89_G	0.993	0.99
133_S	139_L	0.988	0.98
144_I	148_V	0.984	0.98
131_E	135_E	0.982	0.98
93_I	117_I	0.958	0.98
117_I	158_I	0.956	0.98
28_I	32_N	0.954	0.98
71_A	91_A	0.953	0.98
103_S	107_S	0.948	0.98
99_I	148_V	0.947	0.98
15_L	219_V	0.933	0.98
88_L	115_L	0.933	0.98
54_I	57_I	0.932	0.98
99_I	144_I	0.923	0.98
159_S	162_D	0.921	0.98
51_S	88_L	0.918	0.98
85_I	88_L	0.906	0.97
96_V	118_L	0.904	0.97
28_I	31_V	0.900	0.97
168_R	173_L	0.893	0.97
52_F	55_E	0.889	0.97
82_E	100_M	0.884	0.97
94_M	112_A	0.880	0.97
41_I	93_I	0.879	0.97
119_V	178_S	0.877	0.97
139_L	144_I	0.872	0.97
84_E	111_K	0.871	0.97
34_V	212_K	0.863	0.96
146_F	150_L	0.853	0.96
130_Y	140_G	0.852	0.96
113_R	116_D	0.852	0.96
49_L	73_T	0.851	0.96
109_V	118_L	0.849	0.96
169_K	172_E	0.847	0.96
205_I	215_S	0.846	0.96
168_R	194_L	0.833	0.96
127_K	132_R	0.833	0.96
96_V	105_I	0.833	0.96
137_K	147_H	0.828	0.96
107_S	111_K	0.821	0.95
99_I	123_L	0.821	0.95
186_D	190_E	0.821	0.95
215_S	219_V	0.821	0.95
159_S	163_L	0.818	0.95
132_R	137_K	0.812	0.95
95_T	105_I	0.810	0.95
204_A	218_I	0.810	0.95
83_V	112_A	0.808	0.95
105_I	155_S	0.807	0.95
120_Q	152_V	0.807	0.95
133_S	137_K	0.806	0.95
49_L	54_I	0.800	0.95
98_G	152_V	0.796	0.94
19_L	44_I	0.793	0.94
84_E	115_L	0.793	0.94
84_E	88_L	0.788	0.94
31_V	60_I	0.788	0.94
212_K	215_S	0.787	0.94
19_L	60_I	0.784	0.94
26_D	33_E	0.782	0.94
131_E	134_K	0.780	0.94
57_I	69_I	0.780	0.94
35_K	42_I	0.780	0.94
37_L	212_K	0.776	0.94
87_K	116_D	0.776	0.94
128_N	132_R	0.769	0.93
13_K	40_E	0.768	0.93
162_D	177_I	0.764	0.93
42_I	60_I	0.762	0.93
28_I	63_L	0.760	0.93
30_V	33_E	0.757	0.93
47_P	206_T	0.756	0.93
14_F	68_I	0.756	0.93
109_V	158_I	0.755	0.93
24_I	55_E	0.754	0.93
103_S	132_R	0.754	0.93
22_I	85_I	0.753	0.93
21_F	27_A	0.753	0.93
13_K	68_I	0.750	0.93
165_N	186_D	0.742	0.92
40_E	215_S	0.735	0.92
156_R	159_S	0.729	0.91
95_T	175_L	0.729	0.91
102_D	105_I	0.728	0.91
167_I	177_I	0.726	0.91
201_V	218_I	0.725	0.91
132_R	141_V	0.724	0.91
25_N	28_I	0.722	0.91
21_F	206_T	0.722	0.91
210_E	214_V	0.716	0.91
97_L	180_A	0.714	0.91
52_F	56_G	0.713	0.91
70_V	95_T	0.710	0.90
99_I	127_K	0.709	0.90
69_I	91_A	0.707	0.90
57_I	61_K	0.702	0.90
147_H	151_D	0.702	0.90
167_I	170_V	0.698	0.90
160_V	177_I	0.698	0.90
76_A	99_I	0.696	0.89
41_I	92_H	0.696	0.89
59_K	63_L	0.684	0.89
60_I	67_K	0.682	0.89
55_E	59_K	0.676	0.88
35_K	39_N	0.676	0.88
29_K	32_N	0.676	0.88
17_I	205_I	0.673	0.88
142_D	169_K	0.673	0.88
36_D	67_K	0.668	0.87
150_L	153_Q	0.666	0.87
19_L	31_V	0.663	0.87
17_I	34_V	0.658	0.87
16_Q	178_S	0.657	0.87
218_I	221_I	0.656	0.87
87_K	115_L	0.655	0.86
25_N	29_K	0.654	0.86
93_I	198_I	0.652	0.86
17_I	30_V	0.649	0.86
188_I	199_Y	0.643	0.85
134_K	138_Q	0.643	0.85
149_G	153_Q	0.641	0.85
31_V	34_V	0.640	0.85
136_L	144_I	0.637	0.85
214_V	218_I	0.635	0.85
163_L	166_E	0.633	0.85
152_V	157_G	0.633	0.85
170_V	173_L	0.632	0.84
214_V	221_I	0.631	0.84
31_V	52_F	0.630	0.84
46_T	75_T	0.629	0.84
34_V	215_S	0.628	0.84
55_E	62_S	0.626	0.84
74_K	77_D	0.623	0.84
44_I	56_G	0.623	0.84
120_Q	157_G	0.622	0.84
178_S	200_V	0.620	0.83
142_D	165_N	0.618	0.83
44_I	48_L	0.617	0.83
39_N	219_V	0.615	0.83
35_K	67_K	0.612	0.83
188_I	195_P	0.610	0.82
110_K	114_E	0.608	0.82
50_K	86_A	0.607	0.82
188_I	218_I	0.605	0.82
150_L	154_K	0.601	0.81
61_K	64_V	0.600	0.81
39_N	67_K	0.599	0.81
83_V	108_A	0.597	0.81
14_F	192_I	0.596	0.81
118_L	157_G	0.596	0.81
167_I	173_L	0.591	0.80
30_V	211_P	0.585	0.80
58_R	89_G	0.574	0.78
212_K	220_N	0.571	0.78
133_S	141_V	0.571	0.78
76_A	97_L	0.570	0.78
146_F	170_V	0.570	0.78
176_I	179_I	0.569	0.78
108_A	111_K	0.569	0.78
19_L	27_A	0.566	0.77
56_G	59_K	0.565	0.77
111_K	114_E	0.565	0.77
87_K	94_M	0.563	0.77
123_L	148_V	0.562	0.77
98_G	145_G	0.562	0.77
177_I	198_I	0.561	0.77
41_I	67_K	0.560	0.77
47_P	81_V	0.560	0.77
130_Y	138_Q	0.559	0.77
71_A	86_A	0.559	0.77
199_Y	222_L	0.557	0.76
176_I	198_I	0.554	0.76
61_K	69_I	0.554	0.76
158_I	161_A	0.552	0.76
122_D	160_V	0.550	0.75
97_L	124_I	0.547	0.75
48_L	51_S	0.544	0.75
93_I	119_V	0.541	0.74
70_V	125_N	0.536	0.74
32_N	35_K	0.532	0.73
37_L	219_V	0.532	0.73
18_A	206_T	0.529	0.73
96_V	108_A	0.527	0.72
153_Q	174_N	0.527	0.72
47_P	84_E	0.526	0.72
121_A	124_I	0.526	0.72
103_S	110_K	0.523	0.72
105_I	152_V	0.522	0.72
135_E	151_D	0.518	0.71
78_A	180_A	0.517	0.71
41_I	198_I	0.515	0.71
36_D	39_N	0.513	0.70
70_V	93_I	0.510	0.70
44_I	49_L	0.508	0.70
101_D	148_V	0.506	0.69
177_I	196_V	0.505	0.69
144_I	147_H	0.504	0.69
42_I	205_I	0.504	0.69
50_K	73_T	0.500	0.68

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qw4B	4	0.9689	100	0.306	Contact Map
3gdmA	2	0.96	100	0.315	Contact Map
3qw3A	2	0.9644	100	0.323	Contact Map
4mjzA	2	0.9822	100	0.348	Contact Map
3r89A	2	0.9956	100	0.36	Contact Map
3tr2A	2	0.9244	100	0.364	Contact Map
2ffcA	2	0.9822	100	0.369	Contact Map
3n3mA	2	0.9911	100	0.383	Contact Map
3ldvA	2	0.9289	100	0.386	Contact Map
3g3dA	2	0.9556	100	0.386	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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