Y209 - SULSO - GREMLIN Contacts

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Y209 - Uncharacterized N-acetyltransferase SSO0209

UniProt:	Q980R9	Sequences: MELAEKDKGRDFTLRNARMDDIDQIIKINRLTLPENYPYYFFVEHLKEYGLAFFVAIVDNSVVGYIMPRIEWGFSNIKQLPSLVRKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALYEKLNFKKVKVLKGYYADGEDAYLMARPL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	167 (139)
Sequences:	10674 (8165)
Seq/√Len:	692.6

ECOLI - RIMI YJGM MNAT PHNO YPEA YEDL YAFP YJAB YIAC YHHY RIML YJHQ
BACSU - RIMI PAIA YYAR YQJY YHFO YWNH YTMI YBFA YSNE YHDJ YUAI YESJ YDGE YYCN YBBJ YVBK SPSD BLTD YKKB YRKN YITI
HALSA - Q9HMF0 Q9HSL3 Q9HMI8 Q9HQD2 Q9HNJ3 Q9HRK6
SULSO - Y209 Q7LXZ8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
15_R	57_I	3.327	1.00
112_M	144_F	3.047	1.00
31_L	95_L	2.956	1.00
105_T	141_K	2.534	1.00
66_I	111_S	2.461	1.00
105_T	142_L	2.386	1.00
56_A	103_I	2.313	1.00
15_R	21_D	2.307	1.00
146_K	149_V	2.188	1.00
68_P	111_S	2.015	1.00
63_V	98_Y	1.969	1.00
109_E	142_L	1.926	1.00
140_E	146_K	1.864	1.00
131_S	158_E	1.864	1.00
17_A	25_I	1.821	1.00
54_F	110_A	1.792	1.00
146_K	161_Y	1.773	1.00
23_D	39_Y	1.759	1.00
112_M	124_I	1.749	1.00
55_V	62_V	1.734	1.00
87_G	115_M	1.710	1.00
64_G	94_V	1.690	1.00
137_A	140_E	1.681	1.00
110_A	113_K	1.656	1.00
136_I	140_E	1.652	1.00
99_R	134_P	1.601	1.00
98_Y	101_K	1.600	1.00
53_F	67_M	1.584	1.00
58_V	98_Y	1.554	1.00
114_S	117_N	1.553	1.00
26_I	30_R	1.548	1.00
31_L	96_E	1.519	1.00
17_A	55_V	1.508	1.00
130_V	159_D	1.501	1.00
149_V	159_D	1.475	1.00
32_T	93_A	1.421	1.00
108_L	142_L	1.383	1.00
58_V	63_V	1.367	1.00
24_Q	27_K	1.361	1.00
130_V	161_Y	1.326	1.00
21_D	57_I	1.299	1.00
57_I	62_V	1.296	1.00
94_V	103_I	1.274	1.00
52_A	114_S	1.271	1.00
130_V	149_V	1.223	1.00
114_S	119_Y	1.218	1.00
126_L	139_Y	1.173	1.00
61_S	97_E	1.172	1.00
58_V	101_K	1.170	1.00
24_Q	62_V	1.165	1.00
61_S	95_L	1.150	1.00
147_V	162_L	1.143	1.00
86_K	125_Y	1.137	1.00
19_M	43_V	1.129	1.00
136_I	146_K	1.117	1.00
70_I	121_A	1.102	1.00
105_T	109_E	1.100	1.00
26_I	39_Y	1.093	1.00
72_W	85_R	1.092	1.00
66_I	107_L	1.069	1.00
14_L	110_A	1.054	1.00
100_R	134_P	1.050	1.00
68_P	115_M	1.049	1.00
57_I	60_N	1.046	1.00
110_A	114_S	1.034	1.00
19_M	47_K	1.034	1.00
54_F	114_S	1.031	1.00
133_Y	137_A	1.031	1.00
135_A	139_Y	1.027	1.00
14_L	106_T	1.026	1.00
27_K	31_L	1.023	1.00
129_R	158_E	1.017	1.00
52_A	119_Y	1.015	1.00
133_Y	136_I	0.992	1.00
39_Y	43_V	0.990	1.00
102_G	105_T	0.989	1.00
28_I	32_T	0.986	1.00
29_N	42_F	0.983	1.00
31_L	97_E	0.982	1.00
86_K	123_E	0.977	1.00
28_I	95_L	0.969	1.00
146_K	163_M	0.959	1.00
17_A	53_F	0.956	1.00
124_I	144_F	0.954	1.00
106_T	109_E	0.948	1.00
85_R	122_E	0.948	1.00
69_R	90_V	0.946	1.00
12_F	56_A	0.946	1.00
128_V	132_N	0.933	1.00
113_K	117_N	0.924	1.00
115_M	124_I	0.910	1.00
151_K	159_D	0.908	1.00
33_L	93_A	0.907	1.00
43_V	47_K	0.899	1.00
66_I	89_V	0.894	1.00
32_T	99_R	0.888	1.00
14_L	54_F	0.886	1.00
87_G	121_A	0.881	1.00
95_L	98_Y	0.858	1.00
13_T	57_I	0.855	1.00
29_N	65_Y	0.849	1.00
127_E	160_A	0.844	1.00
40_Y	44_E	0.839	1.00
115_M	121_A	0.838	1.00
38_P	41_F	0.832	1.00
28_I	62_V	0.815	1.00
149_V	161_Y	0.813	1.00
125_Y	147_V	0.812	1.00
24_Q	61_S	0.806	1.00
152_G	157_G	0.802	1.00
132_N	135_A	0.801	1.00
112_M	142_L	0.789	1.00
153_Y	160_A	0.787	1.00
52_A	68_P	0.785	1.00
63_V	103_I	0.785	1.00
58_V	61_S	0.785	1.00
153_Y	156_D	0.778	1.00
23_D	27_K	0.776	1.00
126_L	135_A	0.771	1.00
88_H	125_Y	0.769	1.00
61_S	98_Y	0.752	1.00
88_H	127_E	0.747	1.00
154_Y	160_A	0.746	1.00
18_R	21_D	0.741	1.00
56_A	63_V	0.739	1.00
29_N	33_L	0.736	1.00
56_A	107_L	0.731	1.00
42_F	45_H	0.731	1.00
12_F	58_V	0.729	1.00
27_K	95_L	0.728	1.00
32_T	96_E	0.709	1.00
138_L	142_L	0.707	1.00
130_V	158_E	0.702	1.00
17_A	21_D	0.701	1.00
106_T	110_A	0.698	1.00
123_E	147_V	0.697	1.00
41_F	45_H	0.697	1.00
100_R	137_A	0.697	1.00
89_V	108_L	0.693	1.00
29_N	91_S	0.693	1.00
136_I	161_Y	0.692	1.00
19_M	22_I	0.690	1.00
40_Y	43_V	0.685	1.00
56_A	64_G	0.685	1.00
16_N	54_F	0.681	1.00
45_H	67_M	0.680	1.00
12_F	103_I	0.679	1.00
15_R	55_V	0.675	1.00
27_K	61_S	0.674	1.00
133_Y	140_E	0.673	1.00
44_E	48_E	0.673	1.00
140_E	163_M	0.672	1.00
26_I	42_F	0.665	1.00
12_F	106_T	0.663	1.00
25_I	65_Y	0.659	1.00
94_V	104_A	0.658	1.00
70_I	119_Y	0.657	1.00
28_I	93_A	0.654	1.00
108_L	144_F	0.654	1.00
22_I	26_I	0.644	1.00
96_E	99_R	0.642	1.00
112_M	116_K	0.635	1.00
134_P	137_A	0.631	1.00
45_H	49_Y	0.629	1.00
68_P	87_G	0.628	1.00
17_A	22_I	0.626	1.00
24_Q	95_L	0.624	1.00
16_N	114_S	0.622	1.00
45_H	51_L	0.622	1.00
94_V	107_L	0.618	1.00
128_V	135_A	0.616	1.00
150_L	162_L	0.615	1.00
52_A	70_I	0.611	1.00
109_E	113_K	0.604	1.00
67_M	90_V	0.602	1.00
65_Y	91_S	0.601	1.00
70_I	87_G	0.599	1.00
24_Q	57_I	0.597	1.00
108_L	138_L	0.596	1.00
33_L	91_S	0.590	1.00
37_Y	42_F	0.583	1.00
51_L	69_R	0.581	1.00
65_Y	93_A	0.580	1.00
140_E	145_K	0.580	1.00
66_I	92_I	0.576	1.00
37_Y	45_H	0.570	1.00
48_E	51_L	0.570	1.00
15_R	18_R	0.569	1.00
85_R	121_A	0.569	1.00
113_K	116_K	0.565	1.00
137_A	141_K	0.558	1.00
92_I	108_L	0.556	1.00
16_N	52_A	0.553	1.00
14_L	107_L	0.548	1.00
71_E	86_K	0.545	1.00
14_L	56_A	0.534	1.00
110_A	117_N	0.532	1.00
22_I	46_L	0.529	1.00
92_I	126_L	0.529	1.00
103_I	106_T	0.527	1.00
70_I	85_R	0.525	1.00
56_A	106_T	0.524	1.00
108_L	112_M	0.520	1.00
42_F	49_Y	0.513	0.99
37_Y	41_F	0.511	0.99
86_K	150_L	0.505	0.99
69_R	88_H	0.504	0.99
128_V	136_I	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4r3lA	1	0.9341	99.9	0.287	Contact Map
4kvxA	1	0.8922	99.9	0.308	Contact Map
4pv6C	3	0.8922	99.9	0.315	Contact Map
2ob0A	1	0.9042	99.9	0.319	Contact Map
2reeA	1	0.9401	99.9	0.332	Contact Map
3dr6A	2	0.8922	99.9	0.337	Contact Map
1mk4A	2	0.8802	99.9	0.34	Contact Map
2r7hA	2	0.8802	99.9	0.341	Contact Map
2j8mA	2	0.8922	99.9	0.349	Contact Map
3kkwA	1	0.8743	99.9	0.351	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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