Q980R8 - SULSO - GREMLIN Contacts

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Q980R8 - Uncharacterized protein

UniProt:	Q980R8	Sequences: MTKMLEGLLDLCNDVSYILSQASIIESYIFKPGNASRSQDLVNVKYIDIVKSALISSTYYKELCIRGFRGISRIYDTLVELVTRSNKFGFEYQLFGTYLLIAPFAYEAAKINNVFELRKKAAKLLRSLGALETRWFLDALKELNLKYLGKLSSMDYREIENIDFFTLMEFSSKYDIVALNMVNDYSITFAAYKVIKEGLCGLERDVQRAFLYILSNYPDTLIYKKYGAHAALEASKVARLVFSGDCPSSNELEWLNKYLINNNFNPGSTADLIASALAIYYLDEWYGKKGNPHSGFSV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	298 (259)
Sequences:	1073 (848)
Seq/√Len:	52.7

ECOLI - CITG
SULSO - Q980R8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
227_G	230_A	3.360	1.00
183_N	186_S	3.310	1.00
59_Y	81_L	3.259	1.00
222_I	234_A	3.218	1.00
42_V	263_N	3.175	1.00
39_Q	256_N	3.039	1.00
29_I	38_S	3.021	1.00
66_R	77_T	3.019	1.00
245_D	248_S	2.942	1.00
74_I	106_Y	2.905	1.00
226_Y	230_A	2.685	1.00
29_I	36_S	2.678	1.00
234_A	259_L	2.643	1.00
196_K	283_D	2.630	1.00
199_L	205_D	2.547	1.00
222_I	264_F	2.533	1.00
214_L	234_A	2.523	1.00
23_S	97_T	2.459	1.00
164_F	224_K	2.452	1.00
255_L	259_L	2.413	1.00
226_Y	264_F	2.411	1.00
15_V	105_A	2.406	1.00
237_V	258_Y	2.382	1.00
199_L	280_Y	2.341	1.00
206_V	277_L	2.320	1.00
105_A	109_A	2.265	1.00
29_I	37_R	2.222	1.00
67_G	109_A	2.213	1.00
28_Y	50_V	2.199	1.00
164_F	168_M	2.185	1.00
180_N	187_I	2.063	1.00
241_V	248_S	2.002	1.00
213_I	217_Y	1.996	1.00
174_Y	223_Y	1.983	1.00
267_G	271_D	1.967	1.00
28_Y	46_Y	1.953	1.00
194_V	198_G	1.925	0.99
17_Y	57_S	1.915	0.99
108_A	282_L	1.906	0.99
175_D	179_L	1.895	0.99
210_F	214_L	1.890	0.99
187_I	217_Y	1.821	0.99
28_Y	37_R	1.725	0.99
139_A	143_L	1.720	0.99
208_R	248_S	1.710	0.99
86_N	95_F	1.684	0.99
192_Y	276_A	1.674	0.99
194_V	212_Y	1.629	0.98
24_I	53_A	1.602	0.98
100_L	177_V	1.601	0.98
15_V	109_A	1.552	0.98
19_L	101_I	1.550	0.98
256_N	260_I	1.541	0.98
19_L	278_A	1.520	0.97
16_S	20_S	1.511	0.97
52_S	85_S	1.511	0.97
67_G	106_Y	1.500	0.97
92_Y	271_D	1.500	0.97
62_E	80_E	1.498	0.97
44_V	49_I	1.483	0.97
237_V	255_L	1.462	0.97
36_S	39_Q	1.428	0.96
143_L	147_Y	1.428	0.96
29_I	39_Q	1.428	0.96
232_L	235_S	1.391	0.95
56_S	81_L	1.389	0.95
181_M	185_Y	1.382	0.95
256_N	259_L	1.381	0.95
44_V	93_Q	1.374	0.95
209_A	276_A	1.374	0.95
25_I	281_Y	1.341	0.94
140_L	146_K	1.328	0.94
25_I	51_K	1.290	0.93
223_Y	231_A	1.281	0.93
168_M	224_K	1.266	0.93
230_A	264_F	1.254	0.92
217_Y	269_T	1.249	0.92
233_E	237_V	1.245	0.92
252_L	256_N	1.237	0.92
92_Y	267_G	1.232	0.91
52_S	94_L	1.229	0.91
19_L	56_S	1.228	0.91
65_I	69_R	1.221	0.91
144_N	147_Y	1.220	0.91
141_K	145_L	1.220	0.91
101_I	274_A	1.215	0.91
131_L	134_R	1.214	0.91
218_P	235_S	1.205	0.91
64_C	105_A	1.205	0.91
191_A	216_N	1.204	0.91
36_S	256_N	1.201	0.90
211_L	252_L	1.155	0.89
21_Q	281_Y	1.153	0.89
146_K	182_V	1.146	0.88
41_L	221_L	1.135	0.88
56_S	60_Y	1.134	0.88
85_S	89_G	1.128	0.87
103_P	181_M	1.119	0.87
97_T	177_V	1.117	0.87
104_F	279_I	1.111	0.87
20_S	57_S	1.102	0.86
58_T	84_R	1.097	0.86
30_F	36_S	1.095	0.86
35_A	92_Y	1.093	0.86
37_R	46_Y	1.087	0.85
62_E	77_T	1.085	0.85
75_Y	99_L	1.082	0.85
24_I	28_Y	1.080	0.85
99_L	221_L	1.073	0.85
194_V	208_R	1.055	0.84
213_I	269_T	1.054	0.84
260_I	263_N	1.043	0.83
85_S	93_Q	1.040	0.83
230_A	233_E	1.040	0.83
49_I	92_Y	1.032	0.82
231_A	235_S	1.032	0.82
100_L	275_S	1.031	0.82
179_L	183_N	1.025	0.82
140_L	143_L	1.020	0.81
223_Y	228_A	1.019	0.81
71_I	99_L	1.016	0.81
214_L	238_A	1.014	0.81
133_T	136_F	1.009	0.81
20_S	53_A	1.006	0.81
71_I	75_Y	0.995	0.80
187_I	269_T	0.995	0.80
140_L	147_Y	0.990	0.80
30_F	207_Q	0.990	0.80
39_Q	260_I	0.986	0.79
27_S	49_I	0.984	0.79
52_S	93_Q	0.978	0.79
105_A	278_A	0.975	0.78
104_F	275_S	0.968	0.78
197_E	201_G	0.967	0.78
207_Q	248_S	0.962	0.78
41_L	44_V	0.960	0.77
139_A	144_N	0.955	0.77
244_G	251_E	0.953	0.77
155_D	158_E	0.949	0.77
210_F	273_I	0.945	0.76
237_V	240_L	0.944	0.76
215_S	238_A	0.944	0.76
188_T	279_I	0.943	0.76
85_S	225_K	0.938	0.76
275_S	279_I	0.931	0.75
27_S	46_Y	0.930	0.75
137_L	189_F	0.920	0.74
97_T	278_A	0.913	0.74
26_E	271_D	0.910	0.73
43_N	92_Y	0.897	0.72
199_L	202_L	0.896	0.72
27_S	53_A	0.890	0.72
267_G	270_A	0.886	0.71
100_L	189_F	0.883	0.71
176_I	225_K	0.875	0.71
94_L	97_T	0.865	0.70
15_V	64_C	0.856	0.69
36_S	95_F	0.854	0.69
47_I	203_E	0.853	0.69
211_L	241_V	0.851	0.68
70_G	110_K	0.850	0.68
46_Y	50_V	0.850	0.68
53_A	58_T	0.845	0.68
13_N	61_K	0.840	0.67
141_K	144_N	0.838	0.67
94_L	98_Y	0.837	0.67
195_I	281_Y	0.834	0.67
236_K	240_L	0.832	0.67
23_S	91_E	0.826	0.66
24_I	54_L	0.825	0.66
82_V	98_Y	0.824	0.66
74_I	222_I	0.820	0.65
26_E	267_G	0.817	0.65
154_M	160_E	0.814	0.65
168_M	220_T	0.812	0.65
31_K	36_S	0.809	0.64
167_L	224_K	0.808	0.64
212_Y	215_S	0.807	0.64
59_Y	84_R	0.807	0.64
228_A	232_L	0.807	0.64
187_I	213_I	0.807	0.64
248_S	251_E	0.804	0.64
188_T	193_K	0.800	0.64
189_F	279_I	0.799	0.63
211_L	238_A	0.799	0.63
75_Y	221_L	0.793	0.63
180_N	218_P	0.791	0.63
214_L	222_I	0.788	0.62
258_Y	262_N	0.788	0.62
165_F	169_E	0.786	0.62
79_V	135_W	0.777	0.61
31_K	185_Y	0.775	0.61
35_A	49_I	0.774	0.61
176_I	179_L	0.770	0.61
241_V	244_G	0.767	0.60
146_K	149_G	0.765	0.60
71_I	79_V	0.760	0.60
63_L	67_G	0.760	0.60
53_A	189_F	0.759	0.59
46_Y	252_L	0.758	0.59
83_T	246_C	0.754	0.59
75_Y	178_A	0.752	0.59
195_I	276_A	0.752	0.59
162_I	170_F	0.749	0.58
33_G	259_L	0.742	0.58
233_E	262_N	0.741	0.58
35_A	44_V	0.739	0.57
33_G	93_Q	0.738	0.57
18_I	282_L	0.738	0.57
183_N	250_N	0.734	0.57
97_T	224_K	0.726	0.56
241_V	255_L	0.724	0.56
226_Y	276_A	0.724	0.56
33_G	266_P	0.722	0.56
35_A	43_N	0.714	0.55
153_S	156_Y	0.713	0.55
125_L	128_L	0.709	0.54
168_M	214_L	0.709	0.54
253_E	257_K	0.709	0.54
43_N	225_K	0.705	0.54
84_R	87_K	0.705	0.54
64_C	108_A	0.701	0.53
140_L	145_L	0.699	0.53
55_I	84_R	0.698	0.53
188_T	272_L	0.697	0.53
125_L	130_A	0.696	0.53
198_G	208_R	0.695	0.53
256_N	263_N	0.694	0.53
54_L	57_S	0.694	0.53
222_I	266_P	0.691	0.52
76_D	80_E	0.691	0.52
224_K	274_A	0.690	0.52
210_F	269_T	0.690	0.52
177_V	220_T	0.688	0.52
104_F	278_A	0.687	0.52
140_L	144_N	0.683	0.52
43_N	89_G	0.683	0.52
41_L	89_G	0.680	0.51
143_L	146_K	0.679	0.51
78_L	273_I	0.678	0.51
94_L	268_S	0.676	0.51
240_L	254_W	0.675	0.51
26_E	35_A	0.674	0.51
34_N	265_N	0.670	0.50
41_L	225_K	0.669	0.50
169_E	178_A	0.668	0.50
195_I	280_Y	0.668	0.50
266_P	274_A	0.666	0.50
33_G	264_F	0.664	0.50
240_L	243_S	0.664	0.50
222_I	259_L	0.664	0.50
201_G	257_K	0.660	0.49
89_G	265_N	0.658	0.49
16_S	53_A	0.657	0.49
166_T	178_A	0.656	0.49
78_L	268_S	0.656	0.49
174_Y	224_K	0.656	0.49
94_L	221_L	0.652	0.48
66_R	70_G	0.650	0.48
93_Q	271_D	0.649	0.48
187_I	223_Y	0.647	0.48
174_Y	220_T	0.644	0.47
23_S	181_M	0.644	0.47
191_A	212_Y	0.642	0.47
241_V	252_L	0.641	0.47
48_D	93_Q	0.639	0.47
75_Y	166_T	0.639	0.47
95_F	163_D	0.637	0.47
94_L	181_M	0.635	0.47
104_F	185_Y	0.635	0.47
188_T	275_S	0.634	0.46
235_S	239_R	0.634	0.46
85_S	94_L	0.633	0.46
100_L	221_L	0.632	0.46
250_N	254_W	0.632	0.46
63_L	98_Y	0.629	0.46
85_S	98_Y	0.627	0.46
66_R	73_R	0.626	0.46
145_L	148_L	0.624	0.45
23_S	60_Y	0.622	0.45
192_Y	196_K	0.621	0.45
202_L	280_Y	0.619	0.45
43_N	271_D	0.619	0.45
41_L	176_I	0.618	0.45
95_F	169_E	0.617	0.45
176_I	268_S	0.615	0.44
214_L	266_P	0.611	0.44
44_V	92_Y	0.611	0.44
78_L	176_I	0.610	0.44
198_G	212_Y	0.608	0.44
192_Y	279_I	0.607	0.44
213_I	272_L	0.606	0.44
214_L	259_L	0.606	0.44
198_G	205_D	0.605	0.43
36_S	252_L	0.604	0.43
257_K	261_N	0.603	0.43
130_A	163_D	0.602	0.43
236_K	239_R	0.602	0.43
26_E	92_Y	0.600	0.43
81_L	97_T	0.600	0.43
172_S	228_A	0.599	0.43
59_Y	63_L	0.599	0.43
227_G	252_L	0.599	0.43
36_S	94_L	0.598	0.43
34_N	225_K	0.596	0.42
276_A	280_Y	0.595	0.42
40_D	45_K	0.595	0.42
108_A	279_I	0.595	0.42
69_R	73_R	0.592	0.42
44_V	221_L	0.591	0.42
20_S	54_L	0.591	0.42
19_L	280_Y	0.591	0.42
100_L	185_Y	0.591	0.42
47_I	51_K	0.590	0.42
34_N	82_V	0.588	0.42
78_L	99_L	0.586	0.41
82_V	89_G	0.583	0.41
252_L	259_L	0.582	0.41
95_F	268_S	0.580	0.41
67_G	256_N	0.579	0.41
222_I	269_T	0.578	0.41
33_G	67_G	0.578	0.41
31_K	221_L	0.578	0.41
25_I	206_V	0.578	0.41
35_A	271_D	0.576	0.40
99_L	178_A	0.576	0.40
124_L	128_L	0.575	0.40
143_L	148_L	0.573	0.40
88_F	235_S	0.573	0.40
86_N	163_D	0.572	0.40
75_Y	79_V	0.570	0.40
82_V	268_S	0.567	0.40
243_S	246_C	0.564	0.39
15_V	40_D	0.561	0.39
192_Y	280_Y	0.560	0.39
23_S	101_I	0.558	0.39
44_V	99_L	0.558	0.39
99_L	268_S	0.558	0.39
103_P	238_A	0.557	0.39
63_L	102_A	0.557	0.39
96_G	271_D	0.556	0.38
268_S	273_I	0.555	0.38
80_E	83_T	0.554	0.38
214_L	269_T	0.554	0.38
16_S	208_R	0.553	0.38
168_M	222_I	0.552	0.38
195_I	209_A	0.551	0.38
37_R	203_E	0.551	0.38
102_A	177_V	0.550	0.38
255_L	264_F	0.548	0.38
66_R	172_S	0.548	0.38
25_I	47_I	0.546	0.37
36_S	207_Q	0.545	0.37
74_I	196_K	0.543	0.37
207_Q	252_L	0.543	0.37
234_A	282_L	0.541	0.37
110_K	211_L	0.540	0.37
142_E	145_L	0.538	0.37
208_R	241_V	0.536	0.36
35_A	267_G	0.536	0.36
83_T	196_K	0.535	0.36
44_V	264_F	0.534	0.36
24_I	27_S	0.533	0.36
26_E	270_A	0.532	0.36
176_I	273_I	0.531	0.36
85_S	92_Y	0.531	0.36
215_S	239_R	0.531	0.36
85_S	268_S	0.529	0.36
78_L	85_S	0.527	0.36
103_P	226_Y	0.526	0.35
137_L	140_L	0.526	0.35
56_S	89_G	0.525	0.35
195_I	277_L	0.524	0.35
221_L	265_N	0.523	0.35
34_N	41_L	0.522	0.35
89_G	225_K	0.520	0.35
139_A	142_E	0.520	0.35
126_R	131_L	0.519	0.35
44_V	271_D	0.513	0.34
34_N	210_F	0.509	0.34
139_A	145_L	0.508	0.34
96_G	267_G	0.508	0.34
169_E	179_L	0.507	0.34
53_A	99_L	0.505	0.33
123_K	126_R	0.504	0.33
200_C	205_D	0.503	0.33
238_A	259_L	0.500	0.33
75_Y	275_S	0.500	0.33

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3h9pA	2	0.7248	100	0.325	Contact Map
4a4zA	1	0.3289	32.1	0.962	Contact Map
4u4cA	1	0.3523	24.3	0.964	Contact Map
4qu4A	1	0.3054	10.9	0.969	Contact Map
3r84A	2	0.2416	6.3	0.972	Contact Map
4bujA	1	0.3523	5	0.974	Contact Map
2cr7A	1	0.2685	4	0.975	Contact Map
4yozA	1	0.3154	3.3	0.976	Contact Map
5al9A	2	0.3826	2.8	0.977	Contact Map
1e91A	1	0.2752	2.5	0.977	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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