Q980R0 - SULSO - GREMLIN Contacts

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Q980R0 - DNA-directed RNA polymerase, subunit B'' (RpoB2)

UniProt:	Q980R0	Sequences: MASNLTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEVQNELFPSLEQASSIANVDDALDFIGSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLAVNGSNCCTE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	480 (416)
Sequences:	2340 (1160)
Seq/√Len:	56.9

ECOLI - RPOB
BACSU - RPOB
HALSA - RPOB2
SULSO - Q980R0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
25_R	29_D	6.359	1.00
223_F	319_I	6.071	1.00
40_Q	60_L	4.939	1.00
66_G	95_P	4.679	1.00
309_K	321_K	4.606	1.00
40_Q	62_K	4.604	1.00
264_N	267_D	4.295	1.00
31_Y	121_I	4.138	1.00
40_Q	44_D	4.134	1.00
210_F	323_I	3.926	1.00
94_A	121_I	3.674	1.00
64_R	113_E	3.670	1.00
59_R	101_I	3.649	1.00
50_P	57_K	3.449	1.00
62_K	99_T	3.230	1.00
429_V	453_M	3.147	1.00
265_V	290_Q	3.085	1.00
60_L	362_V	2.950	1.00
266_D	286_I	2.885	1.00
84_E	88_R	2.860	1.00
159_R	411_S	2.853	1.00
32_N	36_R	2.760	1.00
57_K	103_V	2.733	1.00
300_H	478_C	2.726	1.00
30_S	347_G	2.637	1.00
424_S	469_N	2.625	1.00
236_R	240_Y	2.594	1.00
33_D	37_N	2.549	1.00
262_I	268_A	2.546	1.00
324_E	330_R	2.525	1.00
232_I	241_A	2.509	1.00
311_K	314_Y	2.471	1.00
101_I	111_P	2.322	1.00
265_V	269_L	2.282	1.00
228_R	235_D	2.213	1.00
202_I	318_A	2.210	1.00
241_A	316_A	2.202	1.00
251_E	255_S	2.082	1.00
47_G	100_M	2.062	1.00
324_E	329_R	2.034	1.00
251_E	254_P	2.029	1.00
64_R	97_W	2.016	1.00
271_F	274_S	1.986	1.00
61_G	101_I	1.984	1.00
28_L	32_N	1.965	1.00
99_T	113_E	1.930	1.00
221_I	371_K	1.921	1.00
412_Q	446_H	1.918	1.00
250_N	254_P	1.878	1.00
39_L	63_I	1.858	1.00
269_L	290_Q	1.821	0.99
227_M	232_I	1.744	0.99
33_D	38_K	1.720	0.99
41_E	44_D	1.718	0.99
422_M	426_L	1.715	0.99
457_E	469_N	1.701	0.99
424_S	457_E	1.701	0.99
35_V	121_I	1.691	0.99
325_L	332_P	1.682	0.99
227_M	316_A	1.648	0.99
97_W	113_E	1.642	0.99
66_G	94_A	1.637	0.99
384_L	453_M	1.624	0.99
248_V	251_E	1.596	0.98
66_G	97_W	1.583	0.98
69_R	119_L	1.575	0.98
99_T	111_P	1.564	0.98
457_E	460_E	1.549	0.98
25_R	475_S	1.536	0.98
50_P	54_P	1.531	0.98
210_F	223_F	1.524	0.98
431_S	449_Q	1.521	0.98
341_K	403_W	1.516	0.98
291_Q	295_K	1.513	0.98
250_N	253_F	1.504	0.98
71_R	85_A	1.495	0.98
273_G	289_A	1.474	0.97
82_P	149_G	1.473	0.97
445_L	464_S	1.465	0.97
426_L	457_E	1.460	0.97
226_L	315_L	1.440	0.97
321_K	330_R	1.437	0.97
295_K	299_P	1.421	0.97
39_L	354_F	1.412	0.97
323_I	327_L	1.408	0.97
227_M	319_I	1.407	0.97
252_L	255_S	1.393	0.96
252_L	256_L	1.392	0.96
428_R	457_E	1.382	0.96
200_V	212_V	1.382	0.96
30_S	158_E	1.382	0.96
349_L	423_L	1.381	0.96
412_Q	425_H	1.381	0.96
212_V	226_L	1.379	0.96
22_G	28_L	1.378	0.96
413_L	422_M	1.377	0.96
251_E	256_L	1.361	0.96
232_I	238_I	1.357	0.96
396_H	403_W	1.357	0.96
223_F	315_L	1.351	0.96
172_V	187_A	1.346	0.96
414_L	426_L	1.344	0.96
200_V	204_R	1.343	0.96
228_R	261_S	1.341	0.96
98_L	116_I	1.322	0.95
202_I	322_V	1.310	0.95
270_D	274_S	1.293	0.95
165_E	397_A	1.292	0.95
334_D	446_H	1.287	0.94
184_T	208_G	1.278	0.94
250_N	258_Q	1.273	0.94
38_K	351_A	1.266	0.94
253_F	257_E	1.264	0.94
95_P	117_G	1.256	0.94
165_E	468_K	1.251	0.94
452_R	463_N	1.242	0.93
238_I	319_I	1.229	0.93
388_D	423_L	1.227	0.93
41_E	351_A	1.223	0.93
203_E	213_S	1.222	0.93
42_I	45_E	1.215	0.92
149_G	174_V	1.213	0.92
82_P	92_Y	1.211	0.92
39_L	62_K	1.209	0.92
218_P	276_V	1.208	0.92
159_R	406_G	1.208	0.92
412_Q	428_R	1.203	0.92
191_S	195_G	1.198	0.92
443_R	454_C	1.192	0.92
443_R	465_G	1.191	0.92
461_G	465_G	1.184	0.91
221_I	226_L	1.184	0.91
175_D	183_I	1.183	0.91
323_I	326_Y	1.183	0.91
82_P	153_I	1.180	0.91
343_L	476_N	1.179	0.91
65_I	96_L	1.176	0.91
171_R	318_A	1.171	0.91
394_I	398_L	1.166	0.91
189_I	202_I	1.163	0.91
189_I	318_A	1.162	0.91
29_D	32_N	1.160	0.91
151_Y	400_T	1.147	0.90
60_L	358_F	1.146	0.90
238_I	242_V	1.143	0.90
58_V	389_I	1.141	0.90
61_G	99_T	1.141	0.90
163_T	343_L	1.132	0.90
428_R	460_E	1.127	0.89
101_I	109_A	1.122	0.89
36_R	154_V	1.122	0.89
249_Q	255_S	1.119	0.89
367_Y	371_K	1.118	0.89
454_C	458_T	1.115	0.89
96_L	119_L	1.106	0.88
24_V	423_L	1.105	0.88
241_A	320_S	1.103	0.88
406_G	469_N	1.102	0.88
450_W	464_S	1.101	0.88
58_V	102_P	1.096	0.88
34_F	397_A	1.094	0.88
42_I	351_A	1.090	0.88
269_L	286_I	1.090	0.88
460_E	467_V	1.088	0.88
335_K	341_K	1.085	0.87
286_I	290_Q	1.083	0.87
433_L	442_A	1.081	0.87
210_F	275_R	1.080	0.87
182_N	208_G	1.071	0.87
254_P	260_S	1.062	0.86
455_P	458_T	1.058	0.86
341_K	439_N	1.055	0.86
435_R	463_N	1.054	0.86
237_D	240_Y	1.052	0.86
406_G	457_E	1.049	0.86
82_P	86_R	1.048	0.86
341_K	428_R	1.047	0.86
440_F	444_D	1.042	0.85
86_R	149_G	1.039	0.85
82_P	161_I	1.033	0.85
29_D	33_D	1.029	0.84
246_P	253_F	1.028	0.84
97_W	115_Y	1.018	0.84
167_L	432_S	1.016	0.84
415_D	422_M	1.012	0.83
254_P	257_E	1.008	0.83
242_V	252_L	0.995	0.82
239_V	253_F	0.992	0.82
209_T	222_P	0.991	0.82
444_D	452_R	0.989	0.82
200_V	315_L	0.987	0.82
191_S	194_A	0.985	0.82
425_H	463_N	0.983	0.82
435_R	457_E	0.976	0.81
385_V	389_I	0.976	0.81
59_R	103_V	0.972	0.81
446_H	460_E	0.970	0.81
47_G	59_R	0.965	0.80
158_E	228_R	0.964	0.80
234_T	237_D	0.960	0.80
149_G	398_L	0.960	0.80
101_I	113_E	0.954	0.80
93_A	118_D	0.951	0.79
454_C	461_G	0.950	0.79
428_R	449_Q	0.944	0.79
161_I	411_S	0.942	0.79
97_W	476_N	0.941	0.79
95_P	118_D	0.937	0.78
446_H	449_Q	0.936	0.78
45_E	351_A	0.935	0.78
306_E	311_K	0.933	0.78
412_Q	457_E	0.930	0.78
115_Y	118_D	0.928	0.78
37_N	41_E	0.927	0.78
235_D	264_N	0.925	0.78
381_L	385_V	0.912	0.77
247_E	251_E	0.907	0.76
162_V	433_L	0.906	0.76
179_T	315_L	0.905	0.76
63_I	96_L	0.904	0.76
211_H	448_T	0.903	0.76
234_T	238_I	0.902	0.76
33_D	351_A	0.901	0.76
402_N	413_L	0.901	0.76
381_L	384_L	0.900	0.76
362_V	366_T	0.900	0.76
122_M	150_G	0.896	0.75
12_R	15_E	0.895	0.75
33_D	41_E	0.891	0.75
256_L	260_S	0.890	0.75
249_Q	257_E	0.889	0.75
211_H	220_K	0.889	0.75
160_V	428_R	0.888	0.75
432_S	438_P	0.885	0.74
270_D	286_I	0.880	0.74
86_R	158_E	0.880	0.74
42_I	46_Q	0.878	0.74
418_N	456_F	0.877	0.74
104_E	107_I	0.877	0.74
153_I	295_K	0.871	0.73
414_L	421_S	0.871	0.73
119_L	327_L	0.868	0.73
300_H	311_K	0.867	0.73
251_E	326_Y	0.866	0.73
253_F	256_L	0.866	0.73
455_P	459_P	0.864	0.73
86_R	275_R	0.858	0.72
225_I	262_I	0.854	0.72
279_G	289_A	0.852	0.72
412_Q	460_E	0.852	0.72
235_D	262_I	0.851	0.71
232_I	312_A	0.849	0.71
32_N	42_I	0.847	0.71
158_E	347_G	0.847	0.71
185_H	322_V	0.844	0.71
417_T	453_M	0.843	0.71
194_A	404_V	0.837	0.70
228_R	262_I	0.835	0.70
416_R	422_M	0.834	0.70
443_R	461_G	0.833	0.70
204_R	221_I	0.833	0.70
396_H	399_A	0.832	0.70
382_K	386_R	0.830	0.70
22_G	26_Q	0.827	0.69
117_G	425_H	0.827	0.69
96_L	216_A	0.826	0.69
438_P	442_A	0.825	0.69
182_N	187_A	0.823	0.69
268_A	428_R	0.821	0.69
418_N	427_R	0.819	0.69
26_Q	470_L	0.818	0.68
89_N	353_L	0.815	0.68
245_D	327_L	0.813	0.68
47_G	51_T	0.813	0.68
29_D	478_C	0.813	0.68
98_L	390_V	0.813	0.68
433_L	438_P	0.812	0.68
320_S	329_R	0.812	0.68
398_L	401_G	0.808	0.67
161_I	346_A	0.807	0.67
269_L	292_I	0.807	0.67
348_D	404_V	0.807	0.67
82_P	311_K	0.804	0.67
413_L	416_R	0.801	0.67
241_A	313_Y	0.801	0.67
88_R	347_G	0.798	0.66
365_L	387_P	0.790	0.66
22_G	25_R	0.789	0.66
361_F	369_L	0.789	0.66
32_N	103_V	0.788	0.66
229_A	268_A	0.788	0.66
448_T	457_E	0.787	0.65
13_V	151_Y	0.787	0.65
249_Q	253_F	0.786	0.65
45_E	355_R	0.786	0.65
334_D	342_R	0.783	0.65
212_V	223_F	0.782	0.65
415_D	421_S	0.780	0.65
58_V	160_V	0.780	0.65
86_R	423_L	0.778	0.65
178_K	247_E	0.777	0.64
154_V	163_T	0.777	0.64
66_G	263_A	0.774	0.64
227_M	315_L	0.772	0.64
434_A	463_N	0.772	0.64
385_V	388_D	0.771	0.64
183_I	206_K	0.771	0.64
443_R	458_T	0.771	0.64
160_V	412_Q	0.770	0.64
433_L	441_E	0.768	0.64
248_V	255_S	0.766	0.63
64_R	301_L	0.765	0.63
452_R	456_F	0.765	0.63
255_S	260_S	0.762	0.63
396_H	400_T	0.759	0.63
120_P	156_G	0.759	0.63
91_T	154_V	0.759	0.63
193_T	341_K	0.757	0.62
98_L	358_F	0.756	0.62
290_Q	398_L	0.756	0.62
415_D	418_N	0.755	0.62
410_V	432_S	0.755	0.62
325_L	330_R	0.753	0.62
358_F	423_L	0.753	0.62
431_S	457_E	0.752	0.62
458_T	465_G	0.751	0.62
180_G	184_T	0.751	0.62
43_I	63_I	0.748	0.61
186_T	238_I	0.744	0.61
119_L	394_I	0.743	0.61
364_D	368_Q	0.741	0.61
221_I	272_I	0.740	0.61
321_K	324_E	0.739	0.61
175_D	178_K	0.738	0.60
316_A	320_S	0.737	0.60
433_L	440_F	0.734	0.60
224_V	256_L	0.733	0.60
227_M	242_V	0.731	0.60
155_N	395_R	0.730	0.60
225_I	318_A	0.729	0.59
203_E	403_W	0.729	0.59
250_N	256_L	0.729	0.59
188_K	218_P	0.728	0.59
225_I	271_F	0.728	0.59
201_T	204_R	0.727	0.59
65_I	94_A	0.727	0.59
250_N	255_S	0.726	0.59
307_D	310_K	0.724	0.59
12_R	16_A	0.724	0.59
34_F	350_F	0.722	0.59
416_R	436_G	0.721	0.59
427_R	446_H	0.721	0.59
446_H	457_E	0.721	0.59
52_E	366_T	0.719	0.58
322_V	326_Y	0.719	0.58
213_S	275_R	0.718	0.58
243_S	429_V	0.717	0.58
15_E	65_I	0.717	0.58
43_I	116_I	0.714	0.58
203_E	471_A	0.712	0.58
57_K	105_N	0.711	0.58
44_D	83_M	0.710	0.57
14_I	24_V	0.708	0.57
204_R	326_Y	0.706	0.57
250_N	257_E	0.703	0.57
122_M	474_G	0.702	0.57
112_E	387_P	0.702	0.57
63_I	116_I	0.700	0.56
369_L	476_N	0.699	0.56
205_L	211_H	0.699	0.56
276_V	293_I	0.697	0.56
440_F	463_N	0.697	0.56
406_G	431_S	0.693	0.56
236_R	242_V	0.691	0.55
248_V	253_F	0.687	0.55
345_L	476_N	0.687	0.55
28_L	311_K	0.683	0.55
451_G	465_G	0.683	0.55
400_T	403_W	0.682	0.54
249_Q	256_L	0.682	0.54
354_F	401_G	0.680	0.54
397_A	448_T	0.680	0.54
202_I	341_K	0.680	0.54
36_R	121_I	0.678	0.54
315_L	319_I	0.678	0.54
65_I	236_R	0.677	0.54
410_V	416_R	0.676	0.54
338_Y	422_M	0.676	0.54
59_R	67_K	0.675	0.54
248_V	258_Q	0.673	0.53
247_E	254_P	0.673	0.53
214_F	298_L	0.672	0.53
151_Y	158_E	0.672	0.53
189_I	238_I	0.671	0.53
158_E	459_P	0.671	0.53
231_G	238_I	0.671	0.53
177_G	183_I	0.671	0.53
415_D	426_L	0.671	0.53
103_V	109_A	0.670	0.53
448_T	460_E	0.668	0.53
454_C	465_G	0.668	0.53
368_Q	386_R	0.664	0.52
25_R	37_N	0.663	0.52
202_I	226_L	0.661	0.52
320_S	324_E	0.660	0.52
441_E	444_D	0.659	0.52
449_Q	457_E	0.659	0.52
353_L	356_V	0.658	0.52
216_A	220_K	0.658	0.52
178_K	182_N	0.658	0.52
24_V	408_T	0.658	0.52
39_L	52_E	0.656	0.52
16_A	366_T	0.653	0.51
340_N	420_L	0.653	0.51
222_P	356_V	0.652	0.51
36_R	41_E	0.652	0.51
230_L	312_A	0.651	0.51
229_A	240_Y	0.649	0.51
230_L	315_L	0.649	0.51
89_N	96_L	0.646	0.51
16_A	315_L	0.646	0.51
412_Q	458_T	0.644	0.50
100_M	285_R	0.641	0.50
338_Y	449_Q	0.641	0.50
85_A	88_R	0.640	0.50
27_H	433_L	0.640	0.50
456_F	463_N	0.639	0.50
18_F	402_N	0.639	0.50
361_F	395_R	0.638	0.50
214_F	272_I	0.637	0.50
202_I	207_D	0.636	0.49
190_I	194_A	0.635	0.49
442_A	467_V	0.634	0.49
96_L	115_Y	0.634	0.49
420_L	423_L	0.632	0.49
53_I	56_L	0.632	0.49
443_R	460_E	0.632	0.49
431_S	467_V	0.629	0.49
263_A	267_D	0.628	0.49
236_R	264_N	0.628	0.49
343_L	453_M	0.627	0.48
48_E	58_V	0.625	0.48
149_G	409_G	0.624	0.48
189_I	315_L	0.624	0.48
158_E	339_A	0.622	0.48
27_H	162_V	0.621	0.48
350_F	401_G	0.621	0.48
262_I	267_D	0.620	0.48
372_S	382_K	0.619	0.48
14_I	447_G	0.618	0.47
221_I	315_L	0.617	0.47
31_Y	299_P	0.616	0.47
65_I	119_L	0.616	0.47
439_N	469_N	0.616	0.47
293_I	298_L	0.616	0.47
301_L	307_D	0.615	0.47
89_N	195_G	0.614	0.47
206_K	345_L	0.613	0.47
424_S	441_E	0.612	0.47
100_M	385_V	0.612	0.47
45_E	50_P	0.612	0.47
414_L	442_A	0.610	0.47
340_N	405_G	0.609	0.46
192_S	195_G	0.609	0.46
119_L	383_A	0.609	0.46
437_Q	462_P	0.606	0.46
43_I	53_I	0.606	0.46
272_I	381_L	0.606	0.46
22_G	35_V	0.605	0.46
285_R	414_L	0.604	0.46
438_P	444_D	0.604	0.46
58_V	369_L	0.603	0.46
123_L	170_N	0.603	0.46
454_C	459_P	0.601	0.46
255_S	262_I	0.601	0.46
432_S	436_G	0.601	0.46
460_E	469_N	0.600	0.45
441_E	445_L	0.599	0.45
43_I	367_Y	0.599	0.45
290_Q	294_D	0.599	0.45
184_T	293_I	0.599	0.45
412_Q	422_M	0.599	0.45
406_G	425_H	0.599	0.45
64_R	99_T	0.596	0.45
151_Y	346_A	0.596	0.45
202_I	206_K	0.594	0.45
328_G	331_E	0.594	0.45
178_K	328_G	0.593	0.45
96_L	354_F	0.593	0.45
249_Q	252_L	0.591	0.45
46_Q	355_R	0.589	0.44
68_P	116_I	0.588	0.44
107_I	388_D	0.588	0.44
67_K	95_P	0.587	0.44
437_Q	444_D	0.586	0.44
156_G	461_G	0.586	0.44
413_L	467_V	0.585	0.44
214_F	297_F	0.585	0.44
278_I	281_K	0.584	0.44
436_G	439_N	0.584	0.44
225_I	408_T	0.584	0.44
160_V	449_Q	0.582	0.44
153_I	354_F	0.580	0.43
184_T	204_R	0.580	0.43
153_I	265_V	0.580	0.43
51_T	55_G	0.580	0.43
161_I	251_E	0.579	0.43
349_L	455_P	0.579	0.43
28_L	296_Y	0.578	0.43
353_L	397_A	0.578	0.43
332_P	365_L	0.578	0.43
82_P	121_I	0.577	0.43
35_V	119_L	0.575	0.43
248_V	252_L	0.575	0.43
213_S	230_L	0.575	0.43
303_T	314_Y	0.572	0.42
251_E	260_S	0.572	0.42
33_D	348_D	0.571	0.42
92_Y	96_L	0.570	0.42
403_W	410_V	0.568	0.42
92_Y	120_P	0.568	0.42
425_H	455_P	0.568	0.42
413_L	426_L	0.567	0.42
420_L	475_S	0.565	0.42
417_T	476_N	0.564	0.42
241_A	343_L	0.563	0.42
460_E	465_G	0.562	0.41
114_V	210_F	0.561	0.41
82_P	150_G	0.559	0.41
46_Q	358_F	0.558	0.41
425_H	469_N	0.557	0.41
151_Y	401_G	0.557	0.41
61_G	343_L	0.556	0.41
63_I	406_G	0.555	0.41
91_T	264_N	0.553	0.40
341_K	357_A	0.552	0.40
428_R	435_R	0.551	0.40
397_A	400_T	0.551	0.40
304_S	447_G	0.549	0.40
415_D	425_H	0.549	0.40
200_V	350_F	0.549	0.40
370_E	388_D	0.548	0.40
261_S	269_L	0.547	0.40
403_W	407_R	0.547	0.40
252_L	319_I	0.547	0.40
104_E	319_I	0.547	0.40
36_R	40_Q	0.547	0.40
37_N	40_Q	0.546	0.40
435_R	440_F	0.545	0.40
100_M	226_L	0.545	0.40
430_I	467_V	0.544	0.40
445_L	455_P	0.544	0.40
348_D	452_R	0.544	0.40
19_K	32_N	0.544	0.40
362_V	402_N	0.542	0.39
397_A	411_S	0.541	0.39
46_Q	359_K	0.541	0.39
194_A	419_W	0.540	0.39
360_A	389_I	0.538	0.39
246_P	315_L	0.538	0.39
63_I	246_P	0.537	0.39
35_V	44_D	0.536	0.39
116_I	257_E	0.535	0.39
49_I	60_L	0.533	0.38
55_G	64_R	0.531	0.38
282_R	363_K	0.530	0.38
23_L	423_L	0.530	0.38
247_E	261_S	0.530	0.38
354_F	394_I	0.529	0.38
365_L	384_L	0.529	0.38
165_E	441_E	0.529	0.38
149_G	235_D	0.528	0.38
420_L	428_R	0.528	0.38
167_L	170_N	0.528	0.38
68_P	71_R	0.528	0.38
302_G	333_D	0.528	0.38
22_G	349_L	0.528	0.38
120_P	152_F	0.527	0.38
470_L	476_N	0.526	0.38
321_K	325_L	0.526	0.38
82_P	85_A	0.525	0.38
59_R	109_A	0.524	0.37
333_D	340_N	0.523	0.37
441_E	457_E	0.522	0.37
360_A	364_D	0.522	0.37
164_Q	432_S	0.520	0.37
255_S	258_Q	0.519	0.37
92_Y	451_G	0.518	0.37
252_L	323_I	0.517	0.37
42_I	47_G	0.516	0.37
162_V	427_R	0.516	0.37
164_Q	430_I	0.516	0.37
248_V	254_P	0.515	0.37
55_G	274_S	0.515	0.37
434_A	440_F	0.514	0.36
245_D	257_E	0.514	0.36
388_D	399_A	0.514	0.36
37_N	44_D	0.514	0.36
58_V	285_R	0.513	0.36
82_P	106_N	0.512	0.36
27_H	173_L	0.512	0.36
53_I	119_L	0.511	0.36
21_K	63_I	0.511	0.36
20_S	25_R	0.511	0.36
463_N	467_V	0.511	0.36
399_A	402_N	0.510	0.36
90_L	292_I	0.510	0.36
414_L	472_V	0.510	0.36
172_V	202_I	0.507	0.36
85_A	339_A	0.507	0.36
20_S	37_N	0.507	0.36
276_V	296_Y	0.507	0.36
296_Y	434_A	0.505	0.36
161_I	383_A	0.505	0.36
196_Y	348_D	0.504	0.35
39_L	221_I	0.504	0.35
414_L	422_M	0.503	0.35
188_K	201_T	0.502	0.35
106_N	266_D	0.502	0.35
179_T	210_F	0.501	0.35
459_P	465_G	0.501	0.35
32_N	62_K	0.501	0.35
307_D	323_I	0.500	0.35
166_D	448_T	0.500	0.35

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4qiwB	1	0.9812	100	0.038	Contact Map
4aybB	1	0.9875	100	0.045	Contact Map
3h0gB	1	0.9708	100	0.061	Contact Map
1twfB	2	0.9396	100	0.064	Contact Map
4c2mB	1	0.9896	100	0.11	Contact Map
4yfkC	1	0.8938	100	0.203	Contact Map
2a6hC	1	0.8771	100	0.204	Contact Map
4kbmA	1	0.6979	100	0.435	Contact Map
3mlqA	1	0.3604	100	0.711	Contact Map
3ltiA	1	0.3083	99.9	0.81	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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