Q980Q2 - SULSO - GREMLIN Contacts

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Q980Q2 - Uncharacterized protein

UniProt:	Q980Q2	Sequences: MEIFMLQSNQIKEKELRLRLFSVDILKELKNIYTYKELSKFFNIQESLICRYVNGRTIPSERQALEIVTRIKNKEFLYNFFIRKIRVYEDDFIDVSNLLFYPNLLKTFLELYLIKLNKVSDVTKIVGIASNGIPFATIVASILEKPLIISKKHKDSTQIQYIEENIRESNGVISTLYIRGDYISKKDKILIVDDVIRSGKTLLSLYNLIGKANASVVGALIIATNTDTWKDKFINKDINLMVLFKV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	246 (211)
Sequences:	601 (386)
Seq/√Len:	26.5

ECOLI - APT
BACSU - PURR XPT APT
HALSA - Q9HNG3
SULSO - Q980Q2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
188_K	215_S	5.751	1.00
185_K	213_N	5.072	1.00
126_V	150_S	4.382	1.00
126_V	205_L	3.040	1.00
123_T	187_D	2.528	0.99
34_T	41_F	2.507	0.99
166_I	169_S	2.407	0.99
112_Y	220_L	2.326	0.98
116_L	220_L	2.300	0.98
231_D	234_I	2.250	0.98
35_Y	41_F	2.225	0.98
137_T	147_L	2.212	0.98
122_V	145_K	2.135	0.97
192_V	220_L	2.074	0.97
187_D	214_A	2.071	0.97
121_D	188_K	2.056	0.96
106_K	141_S	2.037	0.96
191_I	205_L	2.012	0.96
56_R	66_E	1.949	0.95
48_L	52_Y	1.905	0.94
34_T	38_L	1.891	0.94
126_V	209_I	1.877	0.94
239_N	242_V	1.779	0.92
150_S	205_L	1.760	0.92
237_D	240_L	1.732	0.91
45_Q	50_C	1.709	0.90
34_T	42_F	1.703	0.90
155_D	203_L	1.672	0.89
35_Y	38_L	1.672	0.89
35_Y	50_C	1.667	0.89
209_I	216_V	1.656	0.89
35_Y	45_Q	1.647	0.89
37_E	41_F	1.610	0.87
190_L	218_G	1.605	0.87
35_Y	53_V	1.593	0.87
99_L	201_T	1.586	0.87
50_C	53_V	1.579	0.86
188_K	217_V	1.577	0.86
112_Y	116_L	1.565	0.86
229_W	233_F	1.553	0.85
30_K	34_T	1.549	0.85
209_I	214_A	1.537	0.85
128_I	152_K	1.521	0.84
152_K	174_S	1.519	0.84
34_T	50_C	1.487	0.83
38_L	52_Y	1.468	0.82
62_R	68_V	1.448	0.81
47_S	50_C	1.442	0.81
96_S	148_I	1.430	0.80
38_L	41_F	1.428	0.80
45_Q	52_Y	1.419	0.80
171_G	175_T	1.389	0.78
38_L	42_F	1.385	0.78
225_N	228_T	1.382	0.78
35_Y	47_S	1.378	0.78
39_S	42_F	1.375	0.78
33_Y	37_E	1.355	0.76
34_T	39_S	1.317	0.74
177_Y	207_N	1.314	0.74
76_F	101_Y	1.283	0.72
60_S	64_A	1.283	0.72
197_R	219_A	1.278	0.72
47_S	51_R	1.266	0.71
60_S	63_Q	1.260	0.71
31_N	35_Y	1.257	0.71
112_Y	139_V	1.255	0.71
132_G	193_D	1.240	0.70
79_N	82_I	1.240	0.70
33_Y	38_L	1.233	0.69
42_F	52_Y	1.232	0.69
38_L	45_Q	1.231	0.69
202_L	229_W	1.223	0.69
116_L	192_V	1.221	0.69
135_F	222_I	1.218	0.68
224_T	228_T	1.216	0.68
38_L	53_V	1.209	0.68
76_F	121_D	1.204	0.67
76_F	107_T	1.197	0.67
31_N	37_E	1.196	0.67
101_Y	104_L	1.188	0.66
30_K	35_Y	1.187	0.66
129_A	182_Y	1.183	0.66
189_I	214_A	1.179	0.66
38_L	47_S	1.166	0.65
36_K	40_K	1.166	0.65
171_G	198_S	1.165	0.65
35_Y	42_F	1.160	0.64
139_V	161_Y	1.158	0.64
34_T	47_S	1.157	0.64
47_S	52_Y	1.153	0.64
32_I	38_L	1.151	0.64
105_L	222_I	1.137	0.63
186_K	214_A	1.132	0.63
35_Y	39_S	1.130	0.62
128_I	153_H	1.123	0.62
164_E	174_S	1.121	0.62
34_T	37_E	1.116	0.61
30_K	39_S	1.109	0.61
30_K	38_L	1.102	0.60
30_K	45_Q	1.099	0.60
123_T	186_K	1.098	0.60
62_R	191_I	1.091	0.60
111_L	163_E	1.074	0.58
154_K	177_Y	1.068	0.58
165_N	178_I	1.059	0.57
70_R	117_N	1.054	0.57
33_Y	41_F	1.038	0.56
34_T	45_Q	1.027	0.55
105_L	137_T	1.025	0.55
156_S	223_A	1.017	0.54
35_Y	49_I	1.015	0.54
100_F	147_L	1.013	0.54
182_Y	200_K	1.012	0.54
31_N	38_L	1.005	0.53
35_Y	44_I	0.986	0.52
42_F	55_G	0.984	0.52
32_I	47_S	0.978	0.51
56_R	192_V	0.977	0.51
227_D	232_K	0.972	0.51
131_N	151_K	0.966	0.50
112_Y	192_V	0.964	0.50
92_F	126_V	0.963	0.50
52_Y	190_L	0.958	0.50
188_K	191_I	0.953	0.49
124_K	183_I	0.949	0.49
144_E	175_T	0.949	0.49
93_I	112_Y	0.949	0.49
203_L	207_N	0.944	0.49
80_F	101_Y	0.938	0.48
130_S	133_I	0.933	0.48
45_Q	48_L	0.926	0.47
148_I	155_D	0.919	0.47
135_F	174_S	0.918	0.47
96_S	222_I	0.913	0.46
41_F	44_I	0.907	0.46
155_D	241_M	0.907	0.46
143_L	212_A	0.906	0.46
155_D	177_Y	0.904	0.46
88_Y	146_P	0.889	0.45
157_T	197_R	0.884	0.44
36_K	41_F	0.883	0.44
34_T	53_V	0.865	0.43
72_K	235_N	0.864	0.43
101_Y	135_F	0.863	0.43
41_F	50_C	0.862	0.43
41_F	45_Q	0.852	0.42
81_F	202_L	0.842	0.41
33_Y	36_K	0.836	0.41
42_F	53_V	0.836	0.41
30_K	52_Y	0.835	0.41
238_I	241_M	0.834	0.41
128_I	209_I	0.834	0.41
108_F	189_I	0.830	0.40
91_D	140_A	0.827	0.40
183_I	209_I	0.826	0.40
95_V	174_S	0.823	0.40
95_V	177_Y	0.821	0.40
95_V	227_D	0.820	0.40
57_T	63_Q	0.820	0.40
36_K	43_N	0.816	0.39
228_T	231_D	0.813	0.39
72_K	75_E	0.808	0.39
31_N	34_T	0.807	0.39
145_K	197_R	0.805	0.39
59_P	75_E	0.804	0.39
113_L	143_L	0.802	0.38
60_S	86_R	0.796	0.38
192_V	240_L	0.792	0.38
38_L	48_L	0.788	0.37
33_Y	50_C	0.787	0.37
149_I	182_Y	0.786	0.37
35_Y	52_Y	0.786	0.37
150_S	209_I	0.783	0.37
156_S	181_D	0.778	0.37
52_Y	59_P	0.777	0.37
140_A	154_K	0.772	0.36
38_L	50_C	0.771	0.36
30_K	50_C	0.769	0.36
75_E	223_A	0.763	0.36
63_Q	69_T	0.760	0.35
68_V	190_L	0.759	0.35
81_F	152_K	0.758	0.35
35_Y	43_N	0.756	0.35
125_I	145_K	0.751	0.35
50_C	106_K	0.743	0.34
192_V	227_D	0.742	0.34
68_V	74_K	0.741	0.34
176_L	212_A	0.740	0.34
55_G	235_N	0.740	0.34
164_E	207_N	0.739	0.34
55_G	197_R	0.728	0.33
183_I	189_I	0.725	0.33
95_V	173_I	0.722	0.33
34_T	44_I	0.708	0.32
117_N	209_I	0.704	0.32
192_V	213_N	0.702	0.32
98_L	107_T	0.701	0.32
33_Y	47_S	0.694	0.31
190_L	209_I	0.692	0.31
33_Y	49_I	0.690	0.31
142_I	231_D	0.690	0.31
76_F	125_I	0.687	0.31
111_L	187_D	0.685	0.31
168_E	204_S	0.684	0.30
123_T	184_S	0.675	0.30
184_S	187_D	0.672	0.30
127_G	133_I	0.671	0.30
101_Y	119_V	0.669	0.30
165_N	200_K	0.667	0.29
67_I	85_I	0.665	0.29
99_L	190_L	0.660	0.29
193_D	199_G	0.660	0.29
196_I	225_N	0.654	0.29
41_F	53_V	0.654	0.29
54_N	68_V	0.652	0.28
104_L	222_I	0.651	0.28
41_F	47_S	0.648	0.28
31_N	41_F	0.647	0.28
230_K	242_V	0.645	0.28
63_Q	67_I	0.642	0.28
97_N	176_L	0.638	0.28
41_F	52_Y	0.638	0.28
84_K	214_A	0.635	0.27
95_V	149_I	0.635	0.27
108_F	144_E	0.630	0.27
81_F	128_I	0.628	0.27
81_F	177_Y	0.625	0.27
51_R	213_N	0.623	0.27
30_K	41_F	0.622	0.27
46_E	176_L	0.622	0.27
32_I	36_K	0.619	0.26
229_W	234_I	0.616	0.26
92_F	129_A	0.616	0.26
71_I	187_D	0.613	0.26
189_I	205_L	0.612	0.26
30_K	44_I	0.609	0.26
124_K	187_D	0.609	0.26
217_V	226_T	0.606	0.26
80_F	98_L	0.605	0.26
115_K	124_K	0.603	0.26
95_V	152_K	0.602	0.26
130_S	158_Q	0.596	0.25
148_I	182_Y	0.595	0.25
124_K	148_I	0.595	0.25
129_A	207_N	0.593	0.25
97_N	200_K	0.592	0.25
80_F	83_R	0.592	0.25
106_K	185_K	0.585	0.25
94_D	131_N	0.585	0.25
130_S	178_I	0.585	0.25
119_V	149_I	0.583	0.24
30_K	42_F	0.583	0.24
184_S	232_K	0.581	0.24
32_I	35_Y	0.581	0.24
46_E	50_C	0.576	0.24
62_R	148_I	0.575	0.24
144_E	189_I	0.573	0.24
192_V	218_G	0.572	0.24
98_L	219_A	0.572	0.24
113_L	142_I	0.571	0.24
93_I	125_I	0.567	0.24
87_V	177_Y	0.565	0.23
162_I	212_A	0.563	0.23
76_F	79_N	0.563	0.23
145_K	191_I	0.561	0.23
129_A	225_N	0.561	0.23
32_I	43_N	0.560	0.23
39_S	50_C	0.559	0.23
71_I	110_E	0.558	0.23
129_A	139_V	0.558	0.23
150_S	172_V	0.558	0.23
45_Q	53_V	0.555	0.23
45_Q	51_R	0.555	0.23
157_T	173_I	0.554	0.23
38_L	51_R	0.554	0.23
77_L	108_F	0.551	0.23
59_P	104_L	0.549	0.23
37_E	40_K	0.548	0.23
86_R	212_A	0.547	0.23
36_K	53_V	0.547	0.23
72_K	119_V	0.544	0.22
109_L	195_V	0.544	0.22
196_I	221_I	0.541	0.22
94_D	158_Q	0.541	0.22
86_R	133_I	0.540	0.22
113_L	125_I	0.540	0.22
96_S	105_L	0.539	0.22
59_P	129_A	0.533	0.22
155_D	161_Y	0.532	0.22
139_V	192_V	0.530	0.22
77_L	104_L	0.530	0.22
32_I	45_Q	0.529	0.22
113_L	212_A	0.529	0.22
33_Y	53_V	0.528	0.22
106_K	120_S	0.528	0.22
79_N	184_S	0.519	0.21
45_Q	107_T	0.519	0.21
70_R	111_L	0.519	0.21
34_T	43_N	0.518	0.21
201_T	221_I	0.517	0.21
60_S	211_K	0.516	0.21
131_N	200_K	0.514	0.21
43_N	54_N	0.513	0.21
178_I	198_S	0.513	0.21
189_I	209_I	0.512	0.21
94_D	97_N	0.511	0.21
74_K	103_N	0.510	0.21
45_Q	49_I	0.509	0.21
213_N	229_W	0.509	0.21
75_E	210_G	0.506	0.20
51_R	59_P	0.506	0.20
229_W	232_K	0.506	0.20
177_Y	220_L	0.505	0.20
228_T	233_F	0.501	0.20
128_I	167_R	0.500	0.20
129_A	153_H	0.500	0.20

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1o57A	2	0.9309	100	0.527	Contact Map
4m0kA	2	0.6951	100	0.598	Contact Map
4lzaA	2	0.687	100	0.6	Contact Map
1qb7A	2	0.7642	99.9	0.646	Contact Map
2dy0A	2	0.7154	99.9	0.648	Contact Map
1y0bA	2	0.7114	99.9	0.668	Contact Map
1l1qA	2	0.7073	99.9	0.67	Contact Map
1zn8A	2	0.6992	99.9	0.674	Contact Map
1g2qA	2	0.6951	99.9	0.681	Contact Map
2wnsA	2	0.6382	99.9	0.691	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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