Q980P3 - SULSO - GREMLIN Contacts

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Q980P3 - Heme biosynthesis nirD related protein (NirD)

UniProt:	Q980P3	Sequences: MNLVEISDIDKEILMKLEYEFPFDPQPFNIISDGLKISEEELLNRVKKLLEDGIIKRIGMYVSFRAKGMDGALIAARIPQDKIEKFRKIALGIRELTHNYVRDHPKFNIWFVLKANDRDTLNENVKELLSHVESNDYVILYSKKTLKLSVKYDVIRGVSWSPNNTIRSLSKVPTAEELGINKQLLTELSYPLKISQRPFKEIAEKYKMKEDELVELIKELYDKNVIKDYGATLNGEKIGIVENGMVLLDTSNVEQACEKLALNIPEATHVVLRESNDENWKYLCYSMIHASKKETIRNVAKEISKETNSRSYMILFSLENLKPGIVI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	327 (313)
Sequences:	292 (210)
Seq/√Len:	11.9

HALSA - Q9HNW8 Q9HP70
SULSO - Q980P3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
10_D	45_R	7.628	1.00
146_L	255_Q	5.718	1.00
26_Q	197_R	3.490	0.98
7_S	45_R	3.452	0.98
101_V	321_L	3.439	0.98
83_I	109_I	3.330	0.98
72_A	139_I	3.228	0.97
76_A	90_A	3.170	0.97
101_V	319_E	3.148	0.97
269_H	323_P	2.951	0.95
187_E	205_K	2.899	0.95
274_E	285_Y	2.716	0.92
252_N	275_S	2.664	0.92
7_S	10_D	2.543	0.90
195_S	201_E	2.510	0.89
82_K	85_K	2.420	0.87
72_A	125_V	2.408	0.87
244_G	314_I	2.348	0.85
48_K	52_D	2.333	0.85
290_A	296_I	2.242	0.82
25_P	210_E	2.235	0.82
149_S	323_P	2.198	0.81
150_V	269_H	2.143	0.79
60_M	229_Y	2.122	0.79
181_N	216_L	2.079	0.77
152_Y	268_T	2.026	0.75
236_E	320_N	1.995	0.74
109_I	321_L	1.978	0.73
84_E	321_L	1.962	0.73
249_D	275_S	1.954	0.72
142_S	269_H	1.931	0.72
112_V	191_P	1.926	0.71
26_Q	39_E	1.924	0.71
13_I	42_L	1.922	0.71
235_G	271_V	1.908	0.71
263_N	281_K	1.866	0.69
320_N	323_P	1.795	0.66
97_T	269_H	1.784	0.65
57_R	325_I	1.763	0.64
275_S	283_L	1.742	0.63
77_R	106_K	1.734	0.63
29_N	39_E	1.733	0.63
83_I	321_L	1.726	0.63
81_D	211_D	1.675	0.60
93_I	131_H	1.674	0.60
60_M	188_L	1.663	0.60
97_T	325_I	1.642	0.59
228_D	271_V	1.626	0.58
69_M	112_V	1.623	0.58
101_V	290_A	1.623	0.58
149_S	269_H	1.615	0.57
115_A	121_L	1.602	0.57
112_V	145_T	1.588	0.56
71_G	148_L	1.586	0.56
99_N	227_K	1.582	0.56
78_I	86_F	1.578	0.55
52_D	305_K	1.562	0.55
55_I	257_C	1.529	0.53
80_Q	206_Y	1.524	0.53
97_T	323_P	1.519	0.52
141_Y	274_E	1.498	0.51
51_E	263_N	1.472	0.50
197_R	210_E	1.461	0.50
69_M	323_P	1.458	0.49
32_S	48_K	1.451	0.49
98_H	243_N	1.447	0.49
187_E	202_I	1.430	0.48
189_S	285_Y	1.425	0.48
104_H	313_M	1.407	0.47
228_D	235_G	1.400	0.47
218_K	294_E	1.398	0.46
142_S	323_P	1.392	0.46
91_L	99_N	1.392	0.46
92_G	204_E	1.385	0.46
200_K	210_E	1.379	0.45
97_T	114_K	1.368	0.45
32_S	38_S	1.368	0.45
64_F	114_K	1.355	0.44
61_Y	97_T	1.353	0.44
21_F	226_I	1.351	0.44
67_K	185_L	1.348	0.44
129_L	137_Y	1.345	0.44
32_S	173_P	1.344	0.44
61_Y	230_G	1.342	0.44
83_I	101_V	1.331	0.43
99_N	111_F	1.317	0.42
292_K	296_I	1.311	0.42
150_V	323_P	1.311	0.42
104_H	285_Y	1.309	0.42
78_I	90_A	1.305	0.42
129_L	233_L	1.293	0.41
188_L	217_I	1.285	0.41
69_M	320_N	1.278	0.41
183_Q	215_E	1.273	0.40
33_D	80_Q	1.265	0.40
152_Y	230_G	1.264	0.40
248_L	270_V	1.258	0.40
47_K	51_E	1.256	0.39
97_T	149_S	1.256	0.39
103_D	316_F	1.255	0.39
235_G	270_V	1.240	0.39
84_E	319_E	1.214	0.37
232_T	321_L	1.212	0.37
148_L	285_Y	1.211	0.37
69_M	269_H	1.204	0.37
150_V	312_Y	1.204	0.37
21_F	230_G	1.200	0.37
228_D	270_V	1.198	0.37
65_R	153_D	1.198	0.37
269_H	320_N	1.197	0.37
112_V	325_I	1.189	0.36
56_K	320_N	1.188	0.36
25_P	214_V	1.184	0.36
128_L	134_S	1.172	0.36
187_E	218_K	1.169	0.35
39_E	196_Q	1.169	0.35
44_N	86_F	1.165	0.35
114_K	325_I	1.160	0.35
267_A	270_V	1.159	0.35
57_R	128_L	1.158	0.35
112_V	150_V	1.153	0.35
191_P	325_I	1.150	0.35
40_E	222_D	1.145	0.34
25_P	200_K	1.140	0.34
87_R	109_I	1.136	0.34
249_D	252_N	1.128	0.34
114_K	323_P	1.128	0.34
239_G	280_W	1.113	0.33
266_E	321_L	1.112	0.33
78_I	146_L	1.111	0.33
118_R	122_N	1.108	0.33
22_P	198_P	1.106	0.33
56_K	147_K	1.103	0.32
64_F	74_I	1.099	0.32
117_D	325_I	1.093	0.32
151_K	269_H	1.084	0.32
62_V	185_L	1.082	0.32
97_T	233_L	1.081	0.31
55_I	233_L	1.079	0.31
107_F	301_K	1.077	0.31
228_D	258_E	1.058	0.30
253_V	256_A	1.055	0.30
80_Q	203_A	1.053	0.30
24_D	81_D	1.053	0.30
30_I	194_I	1.044	0.30
63_S	321_L	1.043	0.30
21_F	184_L	1.043	0.30
43_L	261_A	1.036	0.30
150_V	191_P	1.034	0.29
250_T	258_E	1.029	0.29
258_E	271_V	1.025	0.29
43_L	194_I	1.023	0.29
232_T	305_K	1.021	0.29
61_Y	142_S	1.019	0.29
31_I	50_L	1.018	0.29
250_T	285_Y	1.014	0.29
220_L	223_K	1.010	0.28
258_E	267_A	1.008	0.28
114_K	149_S	1.000	0.28
189_S	322_K	1.000	0.28
56_K	112_V	0.987	0.28
146_L	272_L	0.982	0.27
112_V	320_N	0.978	0.27
45_R	291_S	0.971	0.27
46_V	63_S	0.965	0.27
65_R	121_L	0.953	0.26
64_F	71_G	0.952	0.26
151_K	323_P	0.949	0.26
57_R	97_T	0.947	0.26
24_D	30_I	0.943	0.26
37_I	208_M	0.943	0.26
57_R	117_D	0.942	0.26
199_F	229_Y	0.942	0.26
74_I	150_V	0.942	0.26
257_C	308_N	0.940	0.26
31_I	302_E	0.938	0.26
61_Y	148_L	0.932	0.25
209_K	212_E	0.930	0.25
40_E	205_K	0.929	0.25
91_L	311_S	0.927	0.25
112_V	230_G	0.926	0.25
144_K	255_Q	0.925	0.25
23_F	154_V	0.915	0.25
248_L	271_V	0.915	0.25
64_F	269_H	0.914	0.25
247_L	317_S	0.914	0.25
97_T	148_L	0.910	0.25
30_I	33_D	0.909	0.25
239_G	287_M	0.909	0.25
86_F	90_A	0.906	0.24
100_Y	239_G	0.898	0.24
128_L	137_Y	0.898	0.24
83_I	244_G	0.897	0.24
17_L	97_T	0.897	0.24
142_S	150_V	0.894	0.24
20_E	295_T	0.892	0.24
278_E	303_I	0.892	0.24
185_L	308_N	0.879	0.23
44_N	305_K	0.877	0.23
40_E	48_K	0.874	0.23
125_V	128_L	0.874	0.23
189_S	270_V	0.870	0.23
96_L	213_L	0.870	0.23
87_R	247_L	0.867	0.23
28_F	43_L	0.866	0.23
145_T	227_K	0.859	0.23
150_V	153_D	0.858	0.23
98_H	287_M	0.856	0.23
243_N	287_M	0.856	0.23
265_P	292_K	0.856	0.23
38_S	217_I	0.855	0.23
177_E	267_A	0.852	0.23
228_D	248_L	0.850	0.22
95_E	227_K	0.849	0.22
220_L	246_V	0.846	0.22
55_I	324_G	0.835	0.22
198_P	239_G	0.834	0.22
55_I	85_K	0.834	0.22
64_F	142_S	0.834	0.22
43_L	104_H	0.828	0.22
147_K	320_N	0.827	0.22
33_D	205_K	0.824	0.22
243_N	289_H	0.822	0.21
98_H	289_H	0.822	0.21
185_L	189_S	0.819	0.21
232_T	308_N	0.814	0.21
246_V	286_S	0.814	0.21
77_R	220_L	0.813	0.21
140_L	288_I	0.812	0.21
126_K	196_Q	0.811	0.21
231_A	268_T	0.807	0.21
23_F	197_R	0.806	0.21
141_Y	228_D	0.804	0.21
76_A	86_F	0.793	0.21
141_Y	284_C	0.793	0.21
52_D	215_E	0.792	0.20
97_T	150_V	0.790	0.20
35_L	126_K	0.785	0.20
125_V	139_I	0.784	0.20
114_K	269_H	0.783	0.20
200_K	204_E	0.780	0.20
42_L	232_T	0.777	0.20
114_K	142_S	0.775	0.20
21_F	199_F	0.770	0.20
146_L	189_S	0.769	0.20
179_G	196_Q	0.768	0.20
44_N	47_K	0.768	0.20
18_E	148_L	0.768	0.20
293_K	297_R	0.766	0.20
235_G	258_E	0.761	0.19
64_F	323_P	0.759	0.19
14_L	188_L	0.759	0.19
145_T	285_Y	0.757	0.19
77_R	130_S	0.755	0.19
10_D	49_L	0.754	0.19
236_E	321_L	0.753	0.19
20_E	324_G	0.748	0.19
112_V	268_T	0.746	0.19
36_K	195_S	0.746	0.19
210_E	303_I	0.746	0.19
65_R	138_V	0.745	0.19
281_K	324_G	0.744	0.19
237_K	320_N	0.744	0.19
14_L	40_E	0.742	0.19
226_I	229_Y	0.740	0.19
7_S	48_K	0.738	0.19
112_V	269_H	0.734	0.19
51_E	94_R	0.733	0.19
9_I	37_I	0.733	0.19
62_V	281_K	0.729	0.19
144_K	272_L	0.728	0.18
59_G	230_G	0.725	0.18
244_G	321_L	0.724	0.18
254_E	272_L	0.724	0.18
61_Y	64_F	0.724	0.18
112_V	323_P	0.723	0.18
251_S	309_S	0.723	0.18
141_Y	189_S	0.718	0.18
147_K	231_A	0.717	0.18
76_A	129_L	0.716	0.18
32_S	42_L	0.715	0.18
165_T	195_S	0.714	0.18
261_A	264_I	0.713	0.18
90_A	272_L	0.711	0.18
94_R	209_K	0.710	0.18
99_N	280_W	0.708	0.18
212_E	215_E	0.706	0.18
41_E	211_D	0.702	0.18
36_K	40_E	0.701	0.18
69_M	97_T	0.697	0.18
151_K	244_G	0.696	0.18
32_S	37_I	0.696	0.18
32_S	206_Y	0.696	0.18
30_I	34_G	0.695	0.18
59_G	325_I	0.695	0.18
34_G	43_L	0.692	0.17
48_K	106_K	0.691	0.17
250_T	283_L	0.690	0.17
144_K	227_K	0.690	0.17
19_Y	150_V	0.690	0.17
244_G	269_H	0.690	0.17
211_D	301_K	0.688	0.17
147_K	240_I	0.687	0.17
148_L	229_Y	0.684	0.17
204_E	302_E	0.684	0.17
82_K	241_V	0.684	0.17
45_R	220_L	0.679	0.17
67_K	112_V	0.677	0.17
126_K	130_S	0.677	0.17
138_V	256_A	0.677	0.17
14_L	215_E	0.673	0.17
226_I	252_N	0.671	0.17
31_I	297_R	0.667	0.17
74_I	115_A	0.664	0.17
205_K	213_L	0.662	0.17
68_G	275_S	0.661	0.17
92_G	192_L	0.658	0.16
290_A	295_T	0.656	0.16
97_T	142_S	0.654	0.16
81_D	222_D	0.653	0.16
214_V	300_A	0.653	0.16
31_I	292_K	0.646	0.16
91_L	274_E	0.645	0.16
181_N	220_L	0.641	0.16
97_T	320_N	0.641	0.16
39_E	71_G	0.640	0.16
56_K	271_V	0.640	0.16
38_S	44_N	0.636	0.16
11_K	144_K	0.636	0.16
258_E	270_V	0.636	0.16
46_V	53_G	0.634	0.16
250_T	254_E	0.633	0.16
48_K	298_N	0.633	0.16
74_I	114_K	0.633	0.16
31_I	290_A	0.630	0.16
183_Q	212_E	0.629	0.16
13_I	207_K	0.628	0.16
31_I	316_F	0.627	0.16
177_E	285_Y	0.627	0.16
161_S	301_K	0.627	0.16
89_I	222_D	0.627	0.16
235_G	248_L	0.627	0.16
40_E	47_K	0.626	0.16
30_I	119_D	0.626	0.16
196_Q	241_V	0.624	0.16
203_A	214_V	0.620	0.15
185_L	323_P	0.618	0.15
123_E	253_V	0.618	0.15
218_K	222_D	0.617	0.15
32_S	170_S	0.613	0.15
196_Q	219_E	0.612	0.15
270_V	285_Y	0.612	0.15
74_I	113_L	0.609	0.15
128_L	325_I	0.609	0.15
142_S	145_T	0.608	0.15
297_R	301_K	0.607	0.15
191_P	238_I	0.607	0.15
38_S	211_D	0.606	0.15
101_V	229_Y	0.606	0.15
177_E	248_L	0.605	0.15
28_F	84_E	0.605	0.15
21_F	257_C	0.604	0.15
112_V	238_I	0.603	0.15
55_I	88_K	0.601	0.15
107_F	308_N	0.600	0.15
71_G	246_V	0.599	0.15
57_R	61_Y	0.596	0.15
74_I	269_H	0.595	0.15
112_V	264_I	0.595	0.15
67_K	248_L	0.593	0.15
235_G	267_A	0.593	0.15
67_K	303_I	0.591	0.15
126_K	319_E	0.588	0.15
141_Y	258_E	0.587	0.15
131_H	212_E	0.586	0.15
33_D	218_K	0.582	0.14
30_I	215_E	0.582	0.14
87_R	287_M	0.580	0.14
40_E	44_N	0.580	0.14
121_L	125_V	0.580	0.14
154_V	234_N	0.579	0.14
31_I	199_F	0.575	0.14
46_V	232_T	0.575	0.14
145_T	303_I	0.575	0.14
126_K	200_K	0.574	0.14
228_D	284_C	0.573	0.14
189_S	323_P	0.573	0.14
22_P	280_W	0.570	0.14
71_G	245_M	0.570	0.14
28_F	295_T	0.570	0.14
99_N	239_G	0.570	0.14
78_I	268_T	0.569	0.14
112_V	142_S	0.569	0.14
182_K	304_S	0.569	0.14
184_L	207_K	0.568	0.14
41_E	195_S	0.568	0.14
107_F	114_K	0.568	0.14
57_R	191_P	0.567	0.14
220_L	225_V	0.565	0.14
69_M	268_T	0.565	0.14
53_G	314_I	0.564	0.14
40_E	52_D	0.562	0.14
33_D	311_S	0.562	0.14
33_D	209_K	0.562	0.14
19_Y	323_P	0.560	0.14
142_S	236_E	0.557	0.14
58_I	234_N	0.557	0.14
146_L	248_L	0.556	0.14
153_D	197_R	0.556	0.14
24_D	40_E	0.554	0.14
42_L	286_S	0.553	0.14
261_A	296_I	0.551	0.14
32_S	194_I	0.551	0.14
33_D	192_L	0.550	0.14
200_K	211_D	0.549	0.14
152_Y	244_G	0.549	0.14
141_Y	270_V	0.549	0.14
55_I	188_L	0.547	0.14
231_A	269_H	0.546	0.14
23_F	131_H	0.544	0.14
76_A	324_G	0.543	0.14
63_S	71_G	0.542	0.14
32_S	162_P	0.541	0.13
108_N	287_M	0.541	0.13
48_K	130_S	0.540	0.13
182_K	204_E	0.539	0.13
79_P	112_V	0.539	0.13
110_W	273_R	0.539	0.13
73_L	102_R	0.539	0.13
102_R	273_R	0.539	0.13
73_L	273_R	0.539	0.13
102_R	110_W	0.539	0.13
73_L	110_W	0.539	0.13
111_F	282_Y	0.536	0.13
24_D	31_I	0.535	0.13
103_D	306_E	0.534	0.13
205_K	294_E	0.534	0.13
165_T	207_K	0.533	0.13
14_L	54_I	0.532	0.13
57_R	112_V	0.532	0.13
35_L	46_V	0.532	0.13
72_A	288_I	0.529	0.13
111_F	128_L	0.527	0.13
31_I	46_V	0.527	0.13
95_E	238_I	0.526	0.13
56_K	286_S	0.521	0.13
189_S	274_E	0.521	0.13
71_G	248_L	0.520	0.13
74_I	325_I	0.517	0.13
132_V	285_Y	0.517	0.13
37_I	106_K	0.515	0.13
55_I	213_L	0.515	0.13
181_N	223_K	0.515	0.13
149_S	152_Y	0.513	0.13
290_A	313_M	0.513	0.13
61_Y	323_P	0.511	0.13
146_L	308_N	0.511	0.13
194_I	284_C	0.509	0.13
85_K	129_L	0.507	0.13
21_F	322_K	0.507	0.13
290_A	317_S	0.507	0.13
39_E	43_L	0.506	0.13
71_G	140_L	0.506	0.13
33_D	252_N	0.505	0.13
267_A	271_V	0.503	0.13
190_Y	205_K	0.502	0.13
211_D	221_Y	0.501	0.13
60_M	74_I	0.501	0.13
203_A	206_Y	0.500	0.13
248_L	258_E	0.500	0.13

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4ch7A	1	0.8807	100	0.507	Contact Map
4un1B	1	0.4709	100	0.77	Contact Map
4un1A	1	0.4434	100	0.783	Contact Map
4pcqA	2	0.4465	99.9	0.822	Contact Map
2ia0A	2	0.4281	99.9	0.823	Contact Map
2e1cA	1	0.4465	99.9	0.825	Contact Map
2p5vA	5	0.4709	99.9	0.828	Contact Map
2cg4A	6	0.4434	99.8	0.83	Contact Map
2pn6A	5	0.4465	99.8	0.836	Contact Map
3i4pA	5	0.4557	99.8	0.839	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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