Q980N7 - SULSO - GREMLIN Contacts

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Q980N7 - Adenylate cyclase, cyaB-type, putative (CyaB)

UniProt:	Q980N7	Sequences: MIEKEVKIVVEYPSLEELRESLGKDMKLLDVEKQEDVYFNYVYRNFKITDEAVRIRINNKGIELTYKGPKLHSSLKAREEISITVNDLNKTIELLRKIGFYPVITIKKTRINYLDKSFIVSLDLVKDLGQFIEIEAINEISDQEIQNYTSNFIRKYKIKGKLTTKSYLELLIDKYEASSKSNSNTY	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	186 (170)
Sequences:	628 (507)
Seq/√Len:	38.9

HALSA - Q9HQ74
SULSO - Q980N7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
3_E	7_K	6.840	1.00
19_R	111_I	5.109	1.00
39_F	92_I	3.261	1.00
110_R	123_D	2.874	1.00
107_K	126_K	2.818	1.00
14_S	17_E	2.631	1.00
26_M	115_D	2.494	1.00
61_G	84_T	2.421	1.00
7_K	10_V	2.287	1.00
165_K	173_D	2.141	0.99
22_L	120_V	2.030	0.99
134_I	149_T	1.972	0.99
83_I	94_L	1.955	0.99
35_E	107_K	1.888	0.98
129_G	167_Y	1.873	0.98
124_L	130_Q	1.831	0.98
68_G	78_R	1.829	0.98
3_E	9_V	1.823	0.98
64_L	95_L	1.822	0.98
83_I	86_N	1.794	0.97
81_I	90_K	1.768	0.97
34_Q	110_R	1.734	0.97
8_I	153_I	1.718	0.97
2_I	7_K	1.677	0.96
78_R	166_S	1.669	0.96
41_Y	100_F	1.627	0.95
120_V	134_I	1.604	0.95
52_A	168_L	1.601	0.95
40_N	46_F	1.597	0.95
52_A	78_R	1.578	0.95
153_I	158_I	1.557	0.94
55_I	85_V	1.528	0.94
33_K	107_K	1.498	0.93
120_V	132_I	1.484	0.93
34_Q	58_N	1.475	0.92
15_L	122_L	1.466	0.92
50_D	70_K	1.432	0.91
128_L	171_L	1.409	0.91
34_Q	123_D	1.404	0.90
52_A	68_G	1.393	0.90
3_E	10_V	1.353	0.89
40_N	158_I	1.352	0.89
54_R	135_E	1.344	0.88
123_D	166_S	1.329	0.88
18_L	132_I	1.328	0.88
22_L	26_M	1.327	0.88
87_D	90_K	1.325	0.88
125_V	128_L	1.320	0.87
108_K	167_Y	1.305	0.87
38_Y	128_L	1.275	0.85
76_K	123_D	1.269	0.85
54_R	80_E	1.269	0.85
85_V	91_T	1.257	0.85
20_E	24_K	1.257	0.85
31_V	111_I	1.256	0.85
83_I	90_K	1.248	0.84
36_D	108_K	1.246	0.84
54_R	65_T	1.240	0.84
44_R	103_V	1.235	0.84
40_N	45_N	1.234	0.84
134_I	153_I	1.232	0.83
53_V	98_I	1.229	0.83
36_D	125_V	1.226	0.83
36_D	106_I	1.221	0.83
8_I	162_L	1.218	0.83
54_R	82_S	1.203	0.82
118_F	152_F	1.199	0.82
36_D	128_L	1.184	0.81
46_F	49_T	1.180	0.81
65_T	99_G	1.172	0.80
54_R	67_K	1.159	0.79
38_Y	168_L	1.097	0.76
67_K	80_E	1.097	0.76
92_I	96_R	1.093	0.75
76_K	166_S	1.082	0.75
52_A	70_K	1.076	0.74
106_I	171_L	1.069	0.74
15_L	170_L	1.064	0.73
106_I	110_R	1.060	0.73
108_K	129_G	1.055	0.73
36_D	167_Y	1.055	0.73
34_Q	106_I	1.048	0.72
36_D	129_G	1.033	0.71
65_T	82_S	1.032	0.71
17_E	21_S	1.026	0.71
42_V	101_Y	1.022	0.70
38_Y	125_V	1.008	0.69
52_A	76_K	1.007	0.69
78_R	168_L	0.990	0.68
48_I	101_Y	0.990	0.68
50_D	78_R	0.980	0.67
136_A	145_I	0.978	0.67
16_E	151_N	0.970	0.66
55_I	91_T	0.970	0.66
78_R	110_R	0.962	0.66
78_R	123_D	0.947	0.64
63_E	82_S	0.933	0.63
4_K	138_N	0.931	0.63
25_D	107_K	0.929	0.63
13_P	161_K	0.919	0.62
125_V	167_Y	0.912	0.61
142_D	147_N	0.909	0.61
51_E	66_Y	0.907	0.61
64_L	91_T	0.894	0.60
91_T	94_L	0.886	0.59
31_V	109_T	0.881	0.59
30_D	64_L	0.874	0.58
21_S	143_Q	0.863	0.57
128_L	131_F	0.861	0.57
68_G	168_L	0.857	0.57
5_E	67_K	0.854	0.56
79_E	97_K	0.853	0.56
149_T	153_I	0.850	0.56
34_Q	153_I	0.848	0.56
41_Y	46_F	0.834	0.54
94_L	118_F	0.829	0.54
123_D	133_E	0.829	0.54
50_D	68_G	0.828	0.54
3_E	8_I	0.825	0.54
19_R	23_G	0.822	0.53
118_F	148_Y	0.814	0.53
92_I	102_P	0.812	0.52
52_A	166_S	0.803	0.52
19_R	122_L	0.803	0.52
65_T	80_E	0.802	0.52
6_V	9_V	0.800	0.51
9_V	131_F	0.800	0.51
37_V	92_I	0.798	0.51
19_R	26_M	0.793	0.51
142_D	145_I	0.784	0.50
150_S	154_R	0.784	0.50
38_Y	50_D	0.782	0.50
138_N	145_I	0.781	0.50
34_Q	78_R	0.777	0.49
76_K	110_R	0.774	0.49
38_Y	66_Y	0.772	0.49
52_A	123_D	0.768	0.48
35_E	105_T	0.766	0.48
37_V	102_P	0.763	0.48
43_Y	100_F	0.759	0.48
110_R	166_S	0.754	0.47
125_V	129_G	0.752	0.47
27_K	114_L	0.752	0.47
55_I	145_I	0.752	0.47
66_Y	97_K	0.751	0.47
114_L	117_S	0.749	0.47
95_L	139_E	0.733	0.45
52_A	110_R	0.733	0.45
5_E	80_E	0.733	0.45
81_I	97_K	0.728	0.45
41_Y	45_N	0.727	0.45
136_A	148_Y	0.727	0.45
70_K	166_S	0.727	0.45
35_E	57_I	0.720	0.44
62_I	88_L	0.717	0.44
38_Y	167_Y	0.715	0.44
57_I	88_L	0.715	0.44
28_L	31_V	0.713	0.44
6_V	120_V	0.698	0.42
25_D	110_R	0.695	0.42
14_S	25_D	0.690	0.42
136_A	149_T	0.689	0.41
82_S	135_E	0.687	0.41
114_L	147_N	0.687	0.41
72_H	75_L	0.678	0.40
38_Y	106_I	0.676	0.40
38_Y	52_A	0.676	0.40
16_E	20_E	0.673	0.40
46_F	51_E	0.672	0.40
122_L	130_Q	0.670	0.40
64_L	111_I	0.669	0.40
47_K	172_I	0.669	0.40
53_V	106_I	0.669	0.40
91_T	113_Y	0.665	0.39
80_E	135_E	0.664	0.39
120_V	139_E	0.660	0.39
34_Q	112_N	0.654	0.38
37_V	57_I	0.650	0.38
93_E	140_I	0.650	0.38
20_E	113_Y	0.649	0.38
32_E	58_N	0.647	0.38
145_I	156_Y	0.644	0.38
24_K	140_I	0.638	0.37
126_K	173_D	0.637	0.37
106_I	125_V	0.636	0.37
112_N	121_S	0.635	0.37
65_T	135_E	0.634	0.37
26_M	134_I	0.629	0.36
68_G	79_E	0.628	0.36
117_S	148_Y	0.627	0.36
59_N	137_I	0.622	0.36
114_L	119_I	0.620	0.36
106_I	170_L	0.618	0.35
67_K	149_T	0.618	0.35
131_F	163_T	0.616	0.35
14_S	19_R	0.616	0.35
163_T	170_L	0.613	0.35
76_K	106_I	0.609	0.35
60_K	140_I	0.608	0.35
106_I	123_D	0.607	0.34
61_G	155_K	0.604	0.34
69_P	78_R	0.600	0.34
18_L	152_F	0.597	0.34
17_E	24_K	0.595	0.33
81_I	84_T	0.594	0.33
36_D	131_F	0.593	0.33
55_I	88_L	0.591	0.33
144_E	147_N	0.587	0.33
16_E	154_R	0.586	0.33
33_K	85_V	0.584	0.33
4_K	10_V	0.582	0.32
67_K	82_S	0.581	0.32
36_D	52_A	0.580	0.32
51_E	125_V	0.571	0.32
146_Q	158_I	0.570	0.32
36_D	127_D	0.569	0.31
48_I	151_N	0.568	0.31
123_D	168_L	0.568	0.31
25_D	115_D	0.567	0.31
40_N	83_I	0.567	0.31
46_F	66_Y	0.566	0.31
106_I	166_S	0.564	0.31
64_L	94_L	0.563	0.31
58_N	163_T	0.563	0.31
20_E	23_G	0.561	0.31
32_E	112_N	0.556	0.30
122_L	131_F	0.554	0.30
66_Y	125_V	0.552	0.30
30_D	119_I	0.551	0.30
62_I	85_V	0.551	0.30
128_L	170_L	0.549	0.30
82_S	132_I	0.549	0.30
58_N	112_N	0.542	0.29
101_Y	159_K	0.542	0.29
6_V	39_F	0.540	0.29
96_R	155_K	0.539	0.29
37_V	88_L	0.535	0.29
16_E	61_G	0.533	0.29
21_S	157_K	0.527	0.28
44_R	51_E	0.523	0.28
24_K	89_N	0.522	0.28
10_V	122_L	0.519	0.28
142_D	170_L	0.515	0.27
22_L	63_E	0.514	0.27
93_E	96_R	0.512	0.27
27_K	151_N	0.510	0.27
89_N	137_I	0.506	0.27
5_E	133_E	0.506	0.27
102_P	105_T	0.505	0.27
76_K	168_L	0.505	0.27
37_V	105_T	0.504	0.27
70_K	78_R	0.504	0.27
118_F	149_T	0.503	0.27
90_K	132_I	0.500	0.26
48_I	157_K	0.500	0.26

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2eenA	2	0.9301	100	0.372	Contact Map
3n10A	2	0.8871	100	0.395	Contact Map
2acaA	2	0.8871	100	0.401	Contact Map
1yemA	2	0.871	100	0.404	Contact Map
2dc4A	2	0.8602	100	0.431	Contact Map
3bhdA	1	0.9624	99.9	0.496	Contact Map
5a67A	1	0.9247	99.9	0.551	Contact Map
5a61A	1	0.9946	99.9	0.574	Contact Map
3tj7A	2	0.828	99.8	0.592	Contact Map
2gfgA	2	0.8925	99.8	0.601	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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