Q980M2 - SULSO - GREMLIN Contacts

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Q980M2 - Multiprotein Bridging Factor (MBP-like), putative (MBP-like)

UniProt:	Q980M2	Sequences: MQANSEEYCELCGSQIRGKGITVSYEGSIITVCNSCYDRIRKHAVIVKADSKKSETRKKATLKPPKMENAELEIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNEESEKEFDDTGLTLGDVVNIKEGKK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	165 (155)
Sequences:	181 (156)
Seq/√Len:	12.5

HALSA - Q9HQS3
SULSO - Q980M2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
79_Y	113_G	3.273	0.98
74_I	134_V	3.149	0.97
101_K	108_K	3.110	0.97
86_R	111_E	2.798	0.94
14_S	35_S	2.630	0.92
82_I	110_F	2.461	0.89
94_Q	104_E	2.451	0.89
44_A	132_K	2.274	0.85
23_V	32_V	2.230	0.84
102_V	107_V	2.128	0.81
125_L	133_L	2.121	0.80
109_R	119_I	1.964	0.75
72_L	134_V	1.943	0.74
91_I	154_L	1.925	0.73
26_E	29_I	1.856	0.70
8_Y	15_Q	1.800	0.68
28_S	80_K	1.795	0.68
28_S	101_K	1.757	0.66
74_I	123_R	1.750	0.66
93_Q	97_A	1.722	0.64
93_Q	107_V	1.716	0.64
7_E	118_T	1.639	0.60
106_I	115_L	1.632	0.60
77_D	81_I	1.587	0.58
15_Q	75_V	1.579	0.58
100_L	118_T	1.564	0.57
21_I	34_N	1.525	0.55
118_T	121_Q	1.517	0.54
11_L	28_S	1.495	0.53
66_K	109_R	1.487	0.53
69_N	77_D	1.474	0.52
106_I	152_L	1.470	0.52
30_I	43_H	1.452	0.51
32_V	125_L	1.440	0.50
32_V	143_S	1.430	0.50
97_A	129_L	1.415	0.49
94_Q	103_S	1.394	0.48
16_I	20_G	1.383	0.48
23_V	78_Y	1.370	0.47
16_I	70_A	1.365	0.47
119_I	122_A	1.353	0.46
38_D	120_S	1.345	0.46
14_S	120_S	1.326	0.45
77_D	131_I	1.325	0.45
51_S	54_S	1.323	0.44
40_I	109_R	1.321	0.44
85_A	127_K	1.308	0.44
66_K	69_N	1.302	0.43
84_T	95_Q	1.285	0.43
11_L	24_S	1.278	0.42
104_E	108_K	1.265	0.42
28_S	157_V	1.262	0.41
26_E	42_K	1.256	0.41
91_I	95_Q	1.233	0.40
102_V	124_Q	1.224	0.40
23_V	120_S	1.216	0.39
25_Y	84_T	1.213	0.39
111_E	129_L	1.202	0.38
40_I	124_Q	1.179	0.37
109_R	114_K	1.178	0.37
66_K	71_E	1.174	0.37
75_V	81_I	1.166	0.37
19_K	25_Y	1.158	0.36
86_R	129_L	1.149	0.36
32_V	152_L	1.142	0.36
96_L	125_L	1.139	0.35
51_S	55_E	1.134	0.35
28_S	116_K	1.127	0.35
41_R	75_V	1.122	0.35
97_A	111_E	1.109	0.34
106_I	121_Q	1.109	0.34
89_L	123_R	1.109	0.34
44_A	94_Q	1.101	0.34
110_F	125_L	1.101	0.34
102_V	133_L	1.094	0.33
115_L	125_L	1.091	0.33
72_L	136_P	1.085	0.33
86_R	97_A	1.053	0.32
100_L	135_T	1.043	0.31
23_V	84_T	1.036	0.31
9_C	13_G	1.027	0.30
9_C	12_C	1.027	0.30
127_K	130_G	1.026	0.30
34_N	77_D	1.024	0.30
74_I	151_G	1.023	0.30
15_Q	161_K	1.022	0.30
66_K	119_I	1.016	0.30
74_I	147_F	1.014	0.30
52_K	55_E	1.013	0.30
24_S	28_S	1.012	0.30
26_E	78_Y	1.003	0.29
86_R	102_V	0.991	0.29
25_Y	30_I	0.978	0.28
110_F	121_Q	0.965	0.28
74_I	119_I	0.947	0.27
23_V	139_N	0.937	0.27
126_E	155_G	0.928	0.26
25_Y	32_V	0.923	0.26
57_R	62_L	0.920	0.26
40_I	94_Q	0.917	0.26
118_T	122_A	0.907	0.25
44_A	92_S	0.900	0.25
101_K	104_E	0.898	0.25
29_I	109_R	0.898	0.25
119_I	134_V	0.897	0.25
94_Q	98_Q	0.885	0.25
88_Q	161_K	0.883	0.25
95_Q	131_I	0.881	0.24
30_I	124_Q	0.879	0.24
83_K	130_G	0.875	0.24
89_L	131_I	0.868	0.24
102_V	111_E	0.864	0.24
30_I	106_I	0.858	0.24
25_Y	40_I	0.849	0.23
109_R	122_A	0.848	0.23
66_K	83_K	0.843	0.23
62_L	148_D	0.840	0.23
122_A	134_V	0.838	0.23
86_R	153_T	0.818	0.22
72_L	140_N	0.816	0.22
63_K	83_K	0.806	0.22
26_E	98_Q	0.806	0.22
55_E	59_K	0.804	0.22
28_S	73_E	0.800	0.22
30_I	121_Q	0.798	0.21
56_T	60_A	0.791	0.21
102_V	121_Q	0.789	0.21
57_R	63_K	0.788	0.21
11_L	160_I	0.787	0.21
99_K	137_L	0.786	0.21
25_Y	159_N	0.785	0.21
83_K	87_E	0.784	0.21
43_H	69_N	0.779	0.21
22_T	31_T	0.766	0.20
32_V	144_E	0.754	0.20
147_F	158_V	0.750	0.20
36_C	117_P	0.747	0.20
33_C	36_C	0.747	0.20
33_C	117_P	0.747	0.20
11_L	23_V	0.745	0.20
130_G	152_L	0.743	0.20
48_K	108_K	0.735	0.19
30_I	41_R	0.732	0.19
8_Y	109_R	0.731	0.19
37_Y	40_I	0.724	0.19
32_V	142_E	0.720	0.19
79_Y	103_S	0.719	0.19
88_Q	128_I	0.716	0.19
69_N	119_I	0.716	0.19
108_K	120_S	0.709	0.19
26_E	103_S	0.708	0.18
16_I	157_V	0.704	0.18
144_E	147_F	0.699	0.18
11_L	27_G	0.699	0.18
49_A	55_E	0.697	0.18
83_K	90_G	0.690	0.18
131_I	139_N	0.689	0.18
59_K	62_L	0.689	0.18
22_T	87_E	0.687	0.18
93_Q	113_G	0.687	0.18
123_R	140_N	0.684	0.18
79_Y	105_N	0.679	0.18
138_E	143_S	0.676	0.18
53_K	74_I	0.675	0.17
89_L	128_I	0.674	0.17
14_S	25_Y	0.673	0.17
111_E	153_T	0.672	0.17
101_K	116_K	0.670	0.17
75_V	140_N	0.666	0.17
11_L	39_R	0.664	0.17
16_I	143_S	0.656	0.17
101_K	118_T	0.655	0.17
135_T	161_K	0.652	0.17
114_K	129_L	0.651	0.17
74_I	122_A	0.650	0.17
74_I	88_Q	0.646	0.17
20_G	73_E	0.633	0.16
121_Q	154_L	0.633	0.16
11_L	139_N	0.633	0.16
82_I	126_E	0.631	0.16
60_A	78_Y	0.626	0.16
124_Q	136_P	0.626	0.16
11_L	150_T	0.625	0.16
34_N	41_R	0.620	0.16
120_S	135_T	0.619	0.16
79_Y	158_V	0.618	0.16
107_V	113_G	0.617	0.16
53_K	57_R	0.615	0.16
46_I	49_A	0.612	0.16
152_L	161_K	0.611	0.16
42_K	66_K	0.607	0.16
67_M	77_D	0.606	0.16
93_Q	118_T	0.606	0.16
68_E	123_R	0.602	0.15
23_V	90_G	0.597	0.15
58_K	81_I	0.594	0.15
82_I	111_E	0.592	0.15
30_I	95_Q	0.591	0.15
30_I	78_Y	0.590	0.15
83_K	86_R	0.584	0.15
10_E	13_G	0.584	0.15
134_V	140_N	0.583	0.15
131_I	146_E	0.578	0.15
54_S	59_K	0.576	0.15
23_V	152_L	0.575	0.15
58_K	131_I	0.574	0.15
106_I	127_K	0.568	0.15
157_V	160_I	0.558	0.14
8_Y	122_A	0.557	0.14
63_K	107_V	0.556	0.14
40_I	103_S	0.549	0.14
80_K	127_K	0.548	0.14
148_D	162_E	0.536	0.14
122_A	152_L	0.535	0.14
91_I	99_K	0.534	0.14
101_K	121_Q	0.531	0.14
8_Y	130_G	0.530	0.14
34_N	113_G	0.525	0.13
106_I	118_T	0.525	0.13
142_E	152_L	0.519	0.13
26_E	93_Q	0.518	0.13
82_I	97_A	0.516	0.13
25_Y	42_K	0.516	0.13
30_I	45_V	0.512	0.13
82_I	86_R	0.512	0.13
10_E	126_E	0.512	0.13
83_K	111_E	0.508	0.13
8_Y	121_Q	0.508	0.13
91_I	162_E	0.507	0.13
53_K	80_K	0.507	0.13
77_D	85_A	0.506	0.13
95_Q	149_D	0.500	0.13

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3o9xA	2	0.7273	99.4	0.735	Contact Map
2mezA	1	0.5939	99.3	0.758	Contact Map
2jvlA	1	0.6364	98.6	0.811	Contact Map
1x57A	1	0.5515	98.6	0.813	Contact Map
3fymA	1	0.4545	98.6	0.814	Contact Map
4i6rA	2	0.4667	98.5	0.817	Contact Map
2wusR	1	0.4909	98.5	0.817	Contact Map
1y9qA	1	0.5818	98.5	0.817	Contact Map
2b5aA	2	0.4667	98.5	0.818	Contact Map
3g5gA	2	0.4788	98.5	0.819	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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