GREMLIN Database
Q980K5 - RNase L inhibitor
UniProt: Q980K5 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 600 (504)
Sequences: 659 (373)
Seq/√Len: 16.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
285_Y288_S5.5121.00
280_L284_I5.0111.00
291_Y294_V4.2931.00
281_I284_I4.1751.00
280_L285_Y4.1581.00
280_L283_I4.0151.00
281_I285_Y4.0111.00
346_W351_K3.9131.00
365_A368_G3.8261.00
291_Y298_Y3.7991.00
347_T351_K3.7931.00
286_G292_G3.4130.99
198_E203_T3.3690.99
285_Y289_S3.2740.99
286_G290_V3.2130.99
286_G289_S3.1350.99
285_Y290_V3.0800.99
385_A516_I3.0360.99
354_G363_G2.9500.98
124_I139_V2.8960.98
292_G297_S2.8880.98
287_E290_V2.7470.97
230_E262_K2.7420.97
103_G532_V2.7370.97
284_I287_E2.7070.97
196_V228_L2.7000.97
292_G295_S2.6930.97
287_E291_Y2.6930.97
286_G291_Y2.6730.97
291_Y295_S2.4990.95
346_W349_I2.4920.95
281_I288_S2.4900.95
284_I288_S2.4600.95
288_S291_Y2.4410.95
291_Y296_K2.3930.94
352_K357_Q2.3870.94
170_E173_S2.3500.93
499_A502_I2.3390.93
285_Y291_Y2.3300.93
188_D191_G2.3270.93
280_L288_S2.2550.92
356_F363_G2.2510.92
291_Y297_S2.2500.92
281_I286_G2.2310.91
280_L286_G2.2010.91
407_S473_T2.1660.90
419_G424_Y2.1150.89
284_I289_S2.1040.89
418_D458_N2.0750.88
209_D212_I2.0670.88
172_A222_L2.0460.87
180_V184_L2.0270.87
285_Y292_G2.0010.86
358_L361_D1.9980.86
46_I51_C1.9930.86
292_G299_A1.9880.86
292_G298_Y1.9810.85
294_V300_A1.9810.85
291_Y299_A1.9770.85
283_I286_G1.9750.85
294_V297_S1.9630.85
420_T423_Q1.9570.85
354_G368_G1.9420.84
363_G368_G1.9250.84
153_K159_E1.9230.84
506_T513_T1.9190.84
284_I290_V1.9080.83
292_G296_K1.9010.83
287_E292_G1.8700.82
26_V31_G1.8480.81
503_K526_I1.8310.80
467_K494_E1.8190.80
434_S438_W1.8120.80
290_V298_Y1.8040.79
129_D138_E1.7940.79
173_S177_K1.7930.79
348_K361_D1.7930.79
283_I288_S1.7750.78
48_E51_C1.7740.78
353_L356_F1.7550.77
294_V298_Y1.7500.77
305_N310_G1.7290.76
247_E495_R1.7120.76
295_S298_Y1.6720.74
197_K203_T1.6700.74
440_F444_T1.6570.73
288_S292_G1.6260.72
295_S300_A1.6030.71
290_V299_A1.5860.70
295_S301_R1.5690.69
107_K249_M1.5660.69
349_I353_L1.5590.68
283_I289_S1.5440.68
538_E541_G1.5420.68
309_K533_F1.5300.67
427_N431_D1.5220.66
249_M271_L1.5160.66
48_E53_G1.5140.66
291_Y300_A1.5120.66
54_C57_C1.5000.65
283_I290_V1.4870.65
374_L385_A1.4680.64
486_P490_L1.4600.63
247_E252_A1.4460.62
202_M271_L1.4440.62
495_R503_K1.4410.62
105_L530_I1.4390.62
270_D462_G1.4380.62
294_V299_A1.4340.62
310_G320_R1.4310.62
173_S178_G1.4260.61
324_I340_L1.4190.61
252_A495_R1.4170.61
520_L527_A1.4120.60
104_V284_I1.4100.60
166_I172_A1.4000.60
152_F156_Y1.3960.60
193_K206_W1.3940.59
343_K353_L1.3870.59
537_P541_G1.3700.58
374_L523_H1.3700.58
290_V294_V1.3590.57
156_Y159_E1.3550.57
196_V227_L1.3550.57
223_V236_F1.3480.57
305_N316_N1.3380.56
272_I523_H1.3330.56
165_K169_V1.3300.56
284_I291_Y1.3180.55
361_D365_A1.3080.54
250_N253_K1.3040.54
292_G300_A1.3010.54
154_E480_L1.3000.54
351_K363_G1.2960.54
353_L386_R1.2710.52
247_E503_K1.2690.52
297_S300_A1.2630.52
147_E150_N1.2570.51
197_K206_W1.2510.51
310_G316_N1.2510.51
280_L290_V1.2510.51
107_K271_L1.2480.51
273_V294_V1.2480.51
306_N313_P1.2440.51
392_I448_N1.2430.51
89_K382_T1.2410.51
57_C61_C1.2410.51
320_R326_F1.2360.50
346_W353_L1.2350.50
346_W363_G1.2340.50
252_A503_K1.2330.50
295_S299_A1.2320.50
193_K197_K1.2270.50
200_L227_L1.2200.49
226_S506_T1.2140.49
495_R526_I1.2110.49
141_K212_I1.2050.48
335_D340_L1.2050.48
107_K110_V1.2040.48
165_K170_E1.2030.48
296_K299_A1.1990.48
486_P491_D1.1980.48
224_A228_L1.1880.47
226_S255_I1.1850.47
220_R247_E1.1810.47
58_V408_Y1.1780.47
280_L287_E1.1760.47
351_K395_D1.1730.47
332_S335_D1.1680.46
484_D491_D1.1670.46
511_A531_I1.1640.46
100_T417_Y1.1620.46
280_L289_S1.1610.46
346_W356_F1.1600.46
360_V363_G1.1600.46
153_K156_Y1.1570.46
392_I479_D1.1570.46
498_V501_A1.1560.46
502_I516_I1.1550.45
363_G367_E1.1530.45
174_K264_V1.1510.45
290_V297_S1.1490.45
134_V138_E1.1490.45
303_G310_G1.1460.45
148_I175_F1.1440.45
414_F480_L1.1360.44
117_K134_V1.1330.44
184_L188_D1.1290.44
122_E376_P1.1290.44
27_D44_P1.1190.43
283_I287_E1.1150.43
143_F454_E1.1130.43
344_M351_K1.1030.42
155_L159_E1.1020.42
54_C61_C1.0970.42
354_G365_A1.0970.42
227_L236_F1.0950.42
300_A303_G1.0930.42
192_K228_L1.0920.42
168_Y489_Y1.0860.41
306_N309_K1.0810.41
240_S453_L1.0810.41
324_I329_K1.0750.41
200_L222_L1.0740.41
61_C65_A1.0720.41
252_A308_L1.0640.40
73_D496_Y1.0640.40
286_G295_S1.0630.40
181_N185_T1.0610.40
442_E508_E1.0610.40
357_Q363_G1.0510.39
127_F133_K1.0510.39
51_C61_C1.0500.39
358_L363_G1.0470.39
288_S297_S1.0340.39
310_G315_E1.0330.38
51_C54_C1.0300.38
120_A536_E1.0270.38
485_E491_D1.0260.38
477_E532_V1.0230.38
498_V512_V1.0230.38
517_D522_I1.0210.38
183_I225_A1.0160.38
344_M420_T1.0100.37
196_V249_M1.0060.37
120_A361_D1.0050.37
413_I470_I1.0050.37
430_K437_S0.9970.36
47_Y50_T0.9970.36
28_R166_I0.9950.36
103_G112_K0.9940.36
379_I511_A0.9940.36
120_A235_I0.9930.36
152_F159_E0.9910.36
349_I352_K0.9910.36
491_D518_H0.9900.36
307_F315_E0.9860.36
84_K488_S0.9820.36
347_T356_F0.9810.36
196_V471_A0.9810.36
82_R89_K0.9800.36
182_E185_T0.9750.35
385_A406_L0.9730.35
426_E444_T0.9720.35
320_R324_I0.9710.35
159_E223_V0.9680.35
110_V283_I0.9670.35
144_R522_I0.9620.35
353_L363_G0.9610.35
484_D490_L0.9600.34
77_G428_A0.9570.34
336_L339_D0.9550.34
185_T193_K0.9550.34
500_K526_I0.9530.34
227_L254_A0.9500.34
76_E384_F0.9500.34
176_L233_V0.9470.34
443_V475_A0.9470.34
116_L220_R0.9470.34
198_E420_T0.9460.34
297_S301_R0.9440.34
421_V457_V0.9400.33
288_S294_V0.9390.33
385_A408_Y0.9390.33
160_L163_V0.9380.33
512_V522_I0.9370.33
38_E49_E0.9320.33
304_I310_G0.9290.33
58_V63_Y0.9280.33
445_K450_H0.9220.32
317_M323_E0.9200.32
245_V533_F0.9170.32
326_F329_K0.9150.32
95_T228_L0.9120.32
448_N451_R0.9110.32
47_Y51_C0.9100.32
196_V230_E0.9100.32
352_K356_F0.9100.32
158_N531_I0.9080.32
314_A317_M0.9040.32
340_L349_I0.9030.31
164_H167_Q0.9030.31
181_N193_K0.9010.31
303_G493_E0.8990.31
281_I287_E0.8950.31
349_I399_V0.8930.31
179_T185_T0.8890.31
28_R515_I0.8880.31
308_L315_E0.8850.31
271_L495_R0.8840.31
271_L503_K0.8830.30
54_C65_A0.8810.30
316_N320_R0.8800.30
116_L235_I0.8750.30
46_I53_G0.8730.30
111_G114_T0.8710.30
44_P47_Y0.8680.30
222_L467_K0.8640.30
342_T353_L0.8640.30
394_A397_G0.8640.30
386_R469_Y0.8630.29
171_Y406_L0.8630.29
309_K323_E0.8610.29
54_C62_P0.8580.29
38_E45_V0.8570.29
361_D368_G0.8570.29
348_K362_N0.8560.29
119_L504_R0.8560.29
350_I360_V0.8560.29
347_T353_L0.8550.29
174_K177_K0.8510.29
282_H298_Y0.8500.29
103_G108_N0.8500.29
288_S295_S0.8500.29
31_G52_I0.8490.29
452_L455_S0.8480.29
222_L343_K0.8480.29
312_L317_M0.8470.29
399_V499_A0.8460.29
233_V473_T0.8450.29
352_K395_D0.8450.29
373_I428_A0.8420.28
292_G301_R0.8420.28
126_N147_E0.8400.28
247_E526_I0.8400.28
288_S298_Y0.8390.28
57_C62_P0.8380.28
447_L470_I0.8380.28
51_C62_P0.8350.28
199_L250_N0.8350.28
402_E470_I0.8340.28
537_P540_A0.8340.28
140_L149_Y0.8290.28
349_I361_D0.8290.28
178_G188_D0.8280.28
120_A273_V0.8270.28
184_L224_A0.8270.28
99_N353_L0.8250.28
304_I308_L0.8180.27
86_N109_G0.8150.27
112_K499_A0.8150.27
79_V470_I0.8150.27
150_N509_R0.8140.27
182_E261_N0.8140.27
27_D50_T0.8130.27
304_I316_N0.8120.27
435_T459_D0.8110.27
485_E490_L0.8090.27
57_C63_Y0.8080.27
307_F310_G0.8080.27
374_L530_I0.8080.27
282_H285_Y0.8060.27
484_D518_H0.8060.27
199_L257_E0.8050.27
252_A526_I0.8030.27
483_L488_S0.8030.27
282_H291_Y0.8030.27
73_D408_Y0.7930.26
56_I61_C0.7920.26
136_K156_Y0.7920.26
234_Y264_V0.7910.26
27_D56_I0.7900.26
419_G427_N0.7900.26
334_L417_Y0.7900.26
150_N159_E0.7890.26
51_C57_C0.7850.26
240_S487_S0.7850.26
334_L337_S0.7850.26
374_L436_S0.7850.26
391_E408_Y0.7840.26
343_K348_K0.7840.26
536_E539_K0.7840.26
241_S489_Y0.7820.26
150_N153_K0.7800.26
505_V534_K0.7780.25
310_G313_P0.7750.25
164_H175_F0.7750.25
428_A431_D0.7740.25
266_V516_I0.7740.25
281_I289_S0.7690.25
26_V52_I0.7690.25
73_D311_Y0.7680.25
113_T266_V0.7670.25
202_M220_R0.7670.25
107_K376_P0.7650.25
435_T468_L0.7650.25
373_I531_I0.7650.25
299_A302_V0.7650.25
147_E495_R0.7640.25
424_Y428_A0.7630.25
240_S307_F0.7620.25
186_K260_K0.7580.25
495_R506_T0.7550.24
281_I347_T0.7550.24
448_N497_I0.7550.24
290_V300_A0.7550.24
62_P65_A0.7540.24
199_L203_T0.7540.24
46_I66_I0.7530.24
95_T262_K0.7520.24
172_A178_G0.7520.24
200_L224_A0.7490.24
255_I264_V0.7480.24
486_P518_H0.7450.24
328_L333_D0.7450.24
247_E346_W0.7440.24
166_I170_E0.7430.24
124_I136_K0.7430.24
490_L518_H0.7420.24
372_G524_D0.7420.24
343_K349_I0.7420.24
29_S196_V0.7400.24
278_T521_S0.7400.24
429_S475_A0.7390.24
55_G62_P0.7380.24
62_P66_I0.7380.24
342_T402_E0.7360.24
55_G61_C0.7360.24
220_R505_V0.7350.24
280_L291_Y0.7350.24
173_S176_L0.7340.24
298_Y327_M0.7340.24
347_T352_K0.7330.24
242_Y487_S0.7330.24
140_L155_L0.7320.23
321_P534_K0.7310.23
326_F330_E0.7300.23
247_E446_R0.7270.23
56_I71_L0.7260.23
319_I324_I0.7260.23
196_V254_A0.7240.23
426_E430_K0.7230.23
456_N459_D0.7230.23
160_L386_R0.7230.23
179_T202_M0.7200.23
150_N249_M0.7200.23
386_R414_F0.7190.23
30_G58_V0.7190.23
138_E445_K0.7180.23
61_C66_I0.7160.23
506_T526_I0.7130.23
510_K514_F0.7130.23
252_A271_L0.7110.23
51_C55_G0.7100.23
196_V224_A0.7100.23
65_A68_I0.7100.23
273_V277_L0.7090.23
51_C65_A0.7080.22
59_K62_P0.7050.22
378_G512_V0.7050.22
363_G366_K0.7040.22
417_Y424_Y0.7040.22
181_N393_T0.7040.22
53_G63_Y0.7030.22
500_K503_K0.7010.22
308_L320_R0.6970.22
61_C71_L0.6960.22
239_P382_T0.6960.22
291_Y301_R0.6960.22
169_V173_S0.6960.22
287_E296_K0.6910.22
70_N144_R0.6910.22
302_V311_Y0.6880.22
161_K164_H0.6880.22
83_Y330_E0.6870.22
44_P423_Q0.6860.22
354_G413_I0.6850.22
249_M252_A0.6840.22
51_C59_K0.6830.21
468_L472_A0.6830.21
210_A346_W0.6830.21
137_D225_A0.6830.21
137_D448_N0.6820.21
255_I513_T0.6810.21
339_D342_T0.6790.21
31_G314_A0.6790.21
344_M349_I0.6770.21
188_D192_K0.6770.21
174_K178_G0.6760.21
227_L471_A0.6760.21
27_D531_I0.6750.21
334_L340_L0.6730.21
305_N326_F0.6710.21
426_E434_S0.6700.21
128_G133_K0.6700.21
359_V388_L0.6690.21
448_N467_K0.6690.21
62_P68_I0.6680.21
346_W352_K0.6670.21
478_A481_Y0.6660.21
535_G541_G0.6660.21
168_Y173_S0.6640.21
81_H326_F0.6640.21
304_I320_R0.6640.21
385_A482_V0.6640.21
298_Y301_R0.6630.21
329_K335_D0.6630.21
135_G154_E0.6630.21
210_A344_M0.6620.21
226_S253_K0.6610.21
447_L500_K0.6580.20
77_G265_I0.6580.20
130_P134_V0.6580.20
354_G360_V0.6570.20
247_E271_L0.6570.20
263_Y506_T0.6560.20
103_G126_N0.6540.20
346_W368_G0.6510.20
377_N463_G0.6500.20
137_D327_M0.6500.20
117_K235_I0.6500.20
73_D309_K0.6490.20
138_E200_L0.6480.20
133_K136_K0.6470.20
467_K501_A0.6460.20
81_H90_L0.6450.20
307_F320_R0.6450.20
102_L256_R0.6430.20
155_L206_W0.6430.20
351_K354_G0.6420.20
182_E195_E0.6410.20
353_L361_D0.6410.20
187_I298_Y0.6410.20
193_K441_E0.6400.20
441_E509_R0.6400.20
45_V58_V0.6400.20
502_I524_D0.6400.20
333_D337_S0.6390.20
186_K398_S0.6390.20
253_K325_K0.6390.20
397_G406_L0.6380.20
45_V201_N0.6380.20
339_D398_S0.6380.20
113_T220_R0.6370.20
523_H530_I0.6350.20
301_R449_L0.6350.20
184_L353_L0.6330.20
155_L226_S0.6330.20
485_E518_H0.6320.20
349_I354_G0.6320.20
112_K377_N0.6320.20
113_T260_K0.6300.19
103_G258_L0.6280.19
477_E510_K0.6280.19
117_K122_E0.6270.19
439_F443_V0.6270.19
126_N532_V0.6270.19
470_I476_K0.6250.19
102_L239_P0.6240.19
54_C63_Y0.6240.19
119_L148_I0.6240.19
371_I382_T0.6210.19
301_R304_I0.6200.19
152_F496_Y0.6200.19
54_C66_I0.6200.19
308_L312_L0.6190.19
259_L264_V0.6190.19
120_A164_H0.6180.19
129_D139_V0.6180.19
256_R265_I0.6160.19
48_E57_C0.6150.19
108_N112_K0.6150.19
348_K401_P0.6150.19
280_L418_D0.6150.19
349_I387_I0.6150.19
284_I294_V0.6140.19
225_A471_A0.6140.19
521_S525_Y0.6140.19
370_I483_L0.6140.19
194_D260_K0.6130.19
74_E146_K0.6130.19
304_I319_I0.6120.19
391_E397_G0.6110.19
30_G34_I0.6100.19
54_C71_L0.6100.19
127_F130_P0.6090.19
311_Y374_L0.6090.19
354_G367_E0.6090.19
330_E335_D0.6060.19
354_G361_D0.6060.19
310_G318_K0.6060.19
156_Y391_E0.6050.19
496_Y512_V0.6040.18
113_T453_L0.6040.18
147_E503_K0.6040.18
397_G471_A0.6030.18
235_I242_Y0.6020.18
103_G414_F0.6000.18
53_G57_C0.5990.18
57_C65_A0.5980.18
308_L318_K0.5980.18
286_G294_V0.5980.18
344_M347_T0.5980.18
274_L390_G0.5960.18
130_P133_K0.5950.18
27_D47_Y0.5940.18
85_V253_K0.5940.18
120_A436_S0.5940.18
48_E62_P0.5940.18
193_K228_L0.5930.18
232_D405_I0.5910.18
489_Y525_Y0.5910.18
342_T345_K0.5910.18
147_E247_E0.5910.18
138_E502_I0.5900.18
352_K360_V0.5890.18
94_P97_K0.5890.18
116_L265_I0.5890.18
191_G264_V0.5880.18
340_L351_K0.5860.18
310_G314_A0.5850.18
61_C68_I0.5850.18
457_V468_L0.5840.18
265_I319_I0.5840.18
116_L298_Y0.5830.18
131_N309_K0.5820.18
376_P495_R0.5800.18
269_H377_N0.5790.18
166_I222_L0.5790.18
267_V503_K0.5770.18
131_N387_I0.5770.18
477_E523_H0.5760.18
422_Q454_E0.5760.18
115_V124_I0.5760.18
513_T530_I0.5730.17
73_D84_K0.5720.17
273_V508_E0.5720.17
152_F236_F0.5710.17
306_N314_A0.5700.17
116_L371_I0.5690.17
298_Y314_A0.5690.17
348_K512_V0.5680.17
426_E437_S0.5680.17
282_H290_V0.5680.17
73_D533_F0.5680.17
505_V511_A0.5680.17
331_V339_D0.5670.17
141_K209_D0.5660.17
117_K447_L0.5660.17
234_Y274_L0.5650.17
424_Y427_N0.5620.17
350_I357_Q0.5610.17
113_T527_A0.5590.17
222_L520_L0.5590.17
129_D132_S0.5590.17
434_S440_F0.5580.17
106_G111_G0.5580.17
341_K355_D0.5570.17
308_L316_N0.5550.17
80_I221_L0.5540.17
91_F102_L0.5540.17
172_A176_L0.5540.17
113_T132_S0.5530.17
503_K514_F0.5520.17
390_G479_D0.5520.17
267_V502_I0.5520.17
249_M253_K0.5510.17
113_T450_H0.5490.17
34_I63_Y0.5490.17
44_P56_I0.5480.17
327_M451_R0.5480.17
58_V70_N0.5480.17
142_R200_L0.5480.17
378_G522_I0.5470.17
253_K450_H0.5470.17
324_I454_E0.5470.17
386_R391_E0.5440.16
207_N228_L0.5440.16
370_I502_I0.5420.16
57_C66_I0.5420.16
179_T222_L0.5410.16
69_V110_V0.5410.16
514_F520_L0.5400.16
233_V353_L0.5400.16
354_G358_L0.5400.16
51_C68_I0.5390.16
375_G381_K0.5390.16
202_M495_R0.5390.16
480_L499_A0.5380.16
208_K212_I0.5380.16
264_V513_T0.5370.16
193_K223_V0.5370.16
308_L326_F0.5360.16
407_S476_K0.5360.16
177_K402_E0.5350.16
449_L500_K0.5350.16
103_G526_I0.5350.16
26_V29_S0.5310.16
196_V277_L0.5310.16
142_R227_L0.5310.16
455_S515_I0.5300.16
143_F483_L0.5300.16
345_K451_R0.5300.16
316_N324_I0.5290.16
103_G502_I0.5290.16
69_V522_I0.5290.16
48_E54_C0.5270.16
54_C68_I0.5260.16
48_E55_G0.5250.16
57_C68_I0.5250.16
189_E399_V0.5250.16
343_K351_K0.5240.16
463_G519_D0.5240.16
190_R230_E0.5230.16
310_G319_I0.5220.16
496_Y533_F0.5210.16
498_V522_I0.5210.16
304_I307_F0.5210.16
224_A444_T0.5210.16
90_L304_I0.5210.16
124_I127_F0.5210.16
377_N461_S0.5200.16
152_F474_L0.5200.16
520_L524_D0.5200.16
197_K250_N0.5200.16
355_D360_V0.5190.16
468_L473_T0.5190.16
204_N449_L0.5180.16
202_M247_E0.5180.16
95_T249_M0.5180.16
369_E529_R0.5170.16
324_I330_E0.5160.16
264_V376_P0.5160.16
409_K466_Q0.5150.16
180_V213_L0.5150.16
315_E318_K0.5140.15
351_K387_I0.5140.15
135_G226_S0.5130.15
192_K195_E0.5130.15
81_H94_P0.5120.15
332_S340_L0.5120.15
113_T384_F0.5110.15
109_G116_L0.5100.15
224_A425_L0.5100.15
51_C66_I0.5080.15
267_V308_L0.5080.15
536_E540_A0.5080.15
444_T453_L0.5080.15
137_D206_W0.5070.15
315_E331_V0.5070.15
355_D393_T0.5070.15
249_M258_L0.5060.15
495_R500_K0.5050.15
220_R467_K0.5050.15
83_Y326_F0.5040.15
105_L327_M0.5040.15
305_N324_I0.5030.15
446_R467_K0.5030.15
284_I382_T0.5020.15
180_V187_I0.5020.15
468_L475_A0.5020.15
302_V306_N0.5010.15
246_R525_Y0.5010.15
168_Y172_A0.5010.15
124_I135_G0.5000.15
290_V295_S0.5000.15
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3bk7A 1 0.9783 100 0.36 Contact Map
3j16B 1 0.9817 100 0.372 Contact Map
3ozxA 1 0.8583 100 0.534 Contact Map
1yqtA 1 0.8567 100 0.545 Contact Map
4finA 2 0.8083 100 0.645 Contact Map
2iw3A 2 0.82 100 0.649 Contact Map
4q9hA 1 0.8767 100 0.683 Contact Map
3ux8A 2 0.6983 100 0.688 Contact Map
4f4cA 1 0.8533 100 0.689 Contact Map
2vf7A 2 0.8533 100 0.735 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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