Q980J4 - SULSO - GREMLIN Contacts

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Q980J4 - Thiamine biosynthesis protein related protein (ThiF)

UniProt:	Q980J4	Sequences: MSNSSIDIGVPSLPPPFSIGTISIPTFSRQHLFLKIILHYNLVERYSRQLIVLGLGIQQRLNELKILIAGCGALGTAVAELLARLGVKELTIVDADVVDITNLHRVHLFDENDVGKPKAEVCAKKISLINSSIKINYIIDILDEENVERLISDKDYVFDALDSLYYKLLLNDAIVKLGKILIYGGINGEYGSAKLIDPSQTSCLSCFIDYSDQDEIGNSCDVIGTTPLIVELTATLQVNLMLNHLRGNPDYSLFYIDSRELKIERINIEKNSQCKTCVLNEYPFLYQKISKPKCGIFRTNMKIPELDEPKVFKNLGNVTLCYPSIGCFEKRGR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	333 (258)
Sequences:	1718 (1078)
Seq/√Len:	67.1

ECOLI - THIF MOEB TCDA
BACSU - MOEB THIF TCDA
HALSA - Q9HST5
SULSO - Q980J4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
111_E	131_S	3.830	1.00
109_F	121_V	3.687	1.00
68_I	79_A	3.556	1.00
158_F	241_M	3.536	1.00
157_V	174_I	3.465	1.00
89_E	134_K	3.384	1.00
116_K	124_K	3.290	1.00
203_C	206_C	3.205	1.00
123_A	127_S	3.163	1.00
71_C	92_I	3.157	1.00
65_K	89_E	3.083	1.00
42_L	62_N	2.990	1.00
240_L	243_N	2.948	1.00
78_V	158_F	2.945	1.00
203_C	274_C	2.934	1.00
274_C	277_C	2.860	1.00
95_A	141_I	2.814	1.00
76_T	108_L	2.752	1.00
156_Y	241_M	2.726	1.00
113_D	116_K	2.720	1.00
89_E	136_N	2.680	1.00
64_L	245_L	2.635	1.00
91_T	154_K	2.419	1.00
206_C	274_C	2.371	1.00
123_A	137_Y	2.361	1.00
112_N	128_L	2.303	1.00
203_C	277_C	2.281	1.00
53_L	57_I	2.276	1.00
83_A	133_I	2.160	1.00
126_I	135_I	2.147	1.00
184_G	233_T	2.141	1.00
108_L	122_C	2.094	1.00
117_P	139_I	2.021	1.00
252_S	265_R	1.920	1.00
172_D	205_S	1.910	1.00
91_T	138_I	1.876	1.00
138_I	154_K	1.870	1.00
79_A	92_I	1.849	1.00
61_L	242_L	1.845	1.00
53_L	246_R	1.836	1.00
193_A	236_L	1.815	1.00
79_A	126_I	1.774	1.00
156_Y	245_L	1.736	1.00
153_D	179_K	1.719	1.00
49_Q	104_H	1.705	1.00
142_L	147_V	1.680	0.99
110_D	125_K	1.592	0.99
42_L	132_S	1.581	0.99
108_L	126_I	1.580	0.99
195_L	244_H	1.573	0.99
46_Y	130_N	1.560	0.99
65_K	91_T	1.553	0.99
236_L	263_I	1.542	0.99
231_E	235_T	1.536	0.99
59_Q	63_E	1.504	0.99
151_I	174_I	1.480	0.99
163_S	166_Y	1.464	0.98
206_C	277_C	1.462	0.98
231_E	234_A	1.428	0.98
69_A	170_L	1.417	0.98
175_V	276_T	1.414	0.98
161_L	170_L	1.406	0.98
100_I	114_V	1.393	0.98
161_L	166_Y	1.375	0.98
110_D	128_L	1.359	0.98
127_S	133_I	1.356	0.97
47_S	51_I	1.345	0.97
80_E	107_H	1.339	0.97
156_Y	182_I	1.312	0.97
120_E	139_I	1.305	0.97
93_V	142_L	1.301	0.97
151_I	157_V	1.290	0.97
281_E	286_Y	1.288	0.97
157_V	179_K	1.276	0.96
168_L	209_D	1.272	0.96
182_I	241_M	1.261	0.96
148_E	177_L	1.256	0.96
113_D	125_K	1.241	0.96
148_E	173_A	1.227	0.95
140_D	149_R	1.205	0.95
83_A	126_I	1.200	0.95
173_A	177_L	1.196	0.95
119_A	137_Y	1.178	0.94
113_D	124_K	1.168	0.94
262_K	265_R	1.166	0.94
67_L	93_V	1.164	0.94
239_N	256_I	1.162	0.94
119_A	139_I	1.148	0.93
83_A	90_L	1.147	0.93
102_N	118_K	1.136	0.93
81_L	231_E	1.135	0.93
112_N	124_K	1.125	0.93
239_N	258_S	1.119	0.93
232_L	256_I	1.118	0.93
62_N	132_S	1.111	0.92
174_I	181_L	1.107	0.92
232_L	235_T	1.092	0.92
227_P	231_E	1.091	0.92
127_S	134_K	1.089	0.92
191_G	233_T	1.086	0.91
67_L	154_K	1.082	0.91
118_K	162_D	1.070	0.91
96_D	105_R	1.064	0.91
39_H	42_L	1.061	0.90
120_E	124_K	1.048	0.90
289_I	294_C	1.046	0.90
67_L	151_I	1.044	0.90
96_D	118_K	1.040	0.90
148_E	176_K	1.034	0.89
76_T	80_E	1.033	0.89
120_E	137_Y	1.031	0.89
50_L	55_L	1.028	0.89
96_D	162_D	1.026	0.89
288_K	292_P	1.014	0.88
52_V	189_E	1.014	0.88
69_A	147_V	1.012	0.88
79_A	122_C	1.004	0.88
123_A	135_I	1.002	0.88
289_I	293_K	0.986	0.87
102_N	162_D	0.986	0.87
68_I	82_L	0.984	0.87
230_V	234_A	0.983	0.87
151_I	177_L	0.982	0.87
289_I	292_P	0.978	0.86
228_L	232_L	0.974	0.86
234_A	238_V	0.974	0.86
232_L	239_N	0.973	0.86
71_C	90_L	0.971	0.86
281_E	284_F	0.965	0.86
71_C	122_C	0.965	0.86
282_Y	286_Y	0.963	0.86
49_Q	58_Q	0.961	0.86
278_V	281_E	0.957	0.85
72_G	162_D	0.947	0.85
158_F	184_G	0.937	0.84
125_K	128_L	0.934	0.84
110_D	113_D	0.932	0.84
272_S	279_L	0.925	0.83
249_P	259_R	0.913	0.82
46_Y	133_I	0.907	0.82
149_R	152_S	0.899	0.81
231_E	238_V	0.897	0.81
287_Q	290_S	0.895	0.81
254_F	263_I	0.894	0.81
168_L	205_S	0.894	0.81
182_I	244_H	0.893	0.81
77_A	80_E	0.889	0.81
155_D	179_K	0.887	0.81
288_K	291_K	0.884	0.80
69_A	93_V	0.882	0.80
169_L	205_S	0.876	0.80
105_R	162_D	0.871	0.79
184_G	237_Q	0.869	0.79
142_L	177_L	0.869	0.79
286_Y	289_I	0.866	0.79
124_K	128_L	0.863	0.79
108_L	121_V	0.863	0.79
186_I	229_I	0.862	0.79
130_N	133_I	0.862	0.79
78_V	241_M	0.860	0.78
90_L	126_I	0.852	0.78
88_K	130_N	0.850	0.78
109_F	113_D	0.848	0.78
71_C	119_A	0.845	0.77
68_I	92_I	0.844	0.77
152_S	177_L	0.840	0.77
78_V	160_A	0.838	0.77
228_L	235_T	0.834	0.76
96_D	102_N	0.831	0.76
62_N	131_S	0.830	0.76
65_K	136_N	0.829	0.76
43_V	55_L	0.822	0.75
105_R	118_K	0.818	0.75
120_E	123_A	0.810	0.74
227_P	232_L	0.808	0.74
79_A	108_L	0.806	0.74
108_L	125_K	0.804	0.74
229_I	232_L	0.801	0.73
72_G	105_R	0.801	0.73
282_Y	285_L	0.799	0.73
184_G	191_G	0.797	0.73
83_A	135_I	0.796	0.73
218_N	223_I	0.796	0.73
212_D	217_G	0.782	0.72
227_P	234_A	0.781	0.71
163_S	167_K	0.772	0.71
127_S	135_I	0.771	0.71
219_S	222_V	0.764	0.70
232_L	236_L	0.763	0.70
43_V	50_L	0.763	0.70
113_D	198_P	0.760	0.69
195_L	243_N	0.757	0.69
279_L	283_P	0.756	0.69
147_V	173_A	0.754	0.69
197_D	201_T	0.751	0.69
97_V	117_P	0.749	0.68
102_N	105_R	0.748	0.68
71_C	79_A	0.746	0.68
117_P	120_E	0.744	0.68
229_I	235_T	0.733	0.67
197_D	200_Q	0.731	0.66
80_E	84_R	0.729	0.66
61_L	88_K	0.724	0.66
276_T	281_E	0.723	0.66
225_T	230_V	0.723	0.66
93_V	147_V	0.721	0.65
104_H	185_G	0.721	0.65
84_R	129_I	0.716	0.65
80_E	110_D	0.714	0.65
160_A	164_L	0.713	0.64
148_E	152_S	0.708	0.64
195_L	240_L	0.708	0.64
74_L	184_G	0.705	0.64
230_V	235_T	0.704	0.63
72_G	96_D	0.701	0.63
38_L	42_L	0.696	0.63
93_V	151_I	0.694	0.62
133_I	247_G	0.693	0.62
270_K	278_V	0.691	0.62
46_Y	58_Q	0.685	0.61
194_K	225_T	0.685	0.61
170_L	181_L	0.685	0.61
101_T	118_K	0.684	0.61
113_D	121_V	0.683	0.61
227_P	230_V	0.682	0.61
159_D	224_G	0.682	0.61
168_L	172_D	0.682	0.61
158_F	182_I	0.681	0.61
280_N	283_P	0.679	0.61
58_Q	61_L	0.675	0.60
290_S	293_K	0.672	0.60
163_S	204_L	0.672	0.60
239_N	242_L	0.670	0.60
68_I	247_G	0.670	0.60
226_T	258_S	0.668	0.59
147_V	230_V	0.668	0.59
227_P	235_T	0.665	0.59
151_I	173_A	0.663	0.59
124_K	127_S	0.663	0.59
171_N	206_C	0.660	0.59
248_N	259_R	0.659	0.58
242_L	246_R	0.658	0.58
69_A	101_T	0.656	0.58
190_Y	194_K	0.655	0.58
77_A	81_L	0.654	0.58
283_P	286_Y	0.644	0.57
91_T	136_N	0.642	0.56
72_G	75_G	0.640	0.56
171_N	203_C	0.639	0.56
284_F	287_Q	0.638	0.56
47_S	50_L	0.635	0.56
164_L	204_L	0.634	0.56
96_D	220_C	0.632	0.55
61_L	246_R	0.632	0.55
142_L	151_I	0.629	0.55
245_L	280_N	0.628	0.55
273_Q	279_L	0.628	0.55
81_L	107_H	0.625	0.54
229_I	234_A	0.625	0.54
157_V	170_L	0.623	0.54
278_V	283_P	0.622	0.54
202_S	206_C	0.621	0.54
98_V	121_V	0.620	0.54
183_Y	193_A	0.619	0.54
60_R	63_E	0.619	0.54
101_T	105_R	0.618	0.54
243_N	249_P	0.617	0.53
287_Q	291_K	0.616	0.53
72_G	102_N	0.615	0.53
106_V	122_C	0.612	0.53
60_R	267_N	0.611	0.53
77_A	107_H	0.611	0.53
81_L	204_L	0.609	0.53
220_C	224_G	0.609	0.53
123_A	280_N	0.607	0.52
184_G	193_A	0.605	0.52
169_L	172_D	0.605	0.52
93_V	169_L	0.605	0.52
72_G	118_K	0.602	0.52
144_E	287_Q	0.602	0.52
283_P	287_Q	0.599	0.51
55_L	223_I	0.598	0.51
40_Y	47_S	0.598	0.51
165_Y	216_I	0.597	0.51
60_R	64_L	0.597	0.51
243_N	246_R	0.597	0.51
159_D	167_K	0.595	0.51
159_D	163_S	0.591	0.50
67_L	91_T	0.591	0.50
274_C	278_V	0.590	0.50
211_S	242_L	0.589	0.50
77_A	234_A	0.587	0.50
121_V	126_I	0.584	0.50
192_S	204_L	0.584	0.50
94_D	119_A	0.584	0.50
160_A	223_I	0.583	0.49
290_S	294_C	0.582	0.49
53_L	189_E	0.581	0.49
49_Q	84_R	0.580	0.49
65_K	125_K	0.579	0.49
189_E	228_L	0.577	0.49
57_I	246_R	0.576	0.49
44_E	47_S	0.575	0.49
276_T	283_P	0.574	0.48
256_I	261_L	0.571	0.48
159_D	183_Y	0.570	0.48
116_K	121_V	0.570	0.48
39_H	255_Y	0.569	0.48
193_A	233_T	0.568	0.48
198_P	201_T	0.567	0.48
109_F	264_E	0.566	0.47
281_E	285_L	0.565	0.47
96_D	101_T	0.565	0.47
276_T	285_L	0.564	0.47
101_T	162_D	0.564	0.47
67_L	74_L	0.564	0.47
197_D	244_H	0.562	0.47
104_H	237_Q	0.562	0.47
78_V	193_A	0.560	0.47
84_R	104_H	0.559	0.47
49_Q	229_I	0.556	0.46
244_H	251_Y	0.555	0.46
76_T	121_V	0.555	0.46
81_L	238_V	0.554	0.46
40_Y	139_I	0.553	0.46
103_L	106_V	0.551	0.46
128_L	165_Y	0.550	0.46
132_S	152_S	0.549	0.45
77_A	84_R	0.549	0.45
182_I	195_L	0.549	0.45
194_K	202_S	0.548	0.45
94_D	118_K	0.547	0.45
64_L	247_G	0.546	0.45
99_D	102_N	0.545	0.45
236_L	239_N	0.544	0.45
228_L	234_A	0.543	0.45
73_A	115_G	0.542	0.45
213_Q	223_I	0.542	0.45
171_N	225_T	0.540	0.44
271_N	279_L	0.540	0.44
39_H	132_S	0.540	0.44
77_A	231_E	0.540	0.44
156_Y	244_H	0.539	0.44
285_L	289_I	0.534	0.44
69_A	142_L	0.534	0.44
248_N	251_Y	0.534	0.44
55_L	59_Q	0.532	0.43
171_N	276_T	0.532	0.43
287_Q	292_P	0.532	0.43
147_V	150_L	0.531	0.43
114_V	214_D	0.530	0.43
164_L	212_D	0.530	0.43
38_L	43_V	0.529	0.43
165_Y	188_G	0.527	0.43
159_D	170_L	0.526	0.43
291_K	294_C	0.526	0.43
235_T	239_N	0.526	0.43
44_E	188_G	0.526	0.43
63_E	134_K	0.525	0.43
288_K	293_K	0.525	0.43
94_D	109_F	0.522	0.42
43_V	47_S	0.521	0.42
65_K	154_K	0.520	0.42
58_Q	85_L	0.518	0.42
194_K	268_I	0.516	0.42
221_D	226_T	0.515	0.41
162_D	167_K	0.515	0.41
171_N	181_L	0.514	0.41
89_E	153_D	0.514	0.41
239_N	243_N	0.513	0.41
52_V	254_F	0.512	0.41
125_K	183_Y	0.511	0.41
73_A	104_H	0.511	0.41
131_S	135_I	0.510	0.41
143_D	146_N	0.510	0.41
91_T	179_K	0.507	0.41
49_Q	85_L	0.506	0.40
145_E	165_Y	0.506	0.40
124_K	152_S	0.506	0.40
171_N	277_C	0.506	0.40
282_Y	289_I	0.504	0.40
250_D	260_E	0.504	0.40
124_K	275_K	0.502	0.40
284_F	293_K	0.501	0.40
228_L	239_N	0.501	0.40
236_L	261_L	0.500	0.40
286_Y	293_K	0.500	0.40

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1tt5B	1	0.9099	100	0.343	Contact Map
1zud1	2	0.7057	100	0.345	Contact Map
2nvuB	1	0.997	100	0.353	Contact Map
1jw9B	2	0.7027	100	0.357	Contact Map
4gslA	2	0.9099	100	0.367	Contact Map
3ruiA	2	0.8258	100	0.375	Contact Map
3h8vA	2	0.6366	100	0.378	Contact Map
3h5nA	3	0.8138	100	0.398	Contact Map
4nnjA	2	0.973	100	0.404	Contact Map
4ii2A	1	0.988	100	0.405	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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