Q980H9 - SULSO - GREMLIN Contacts

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Q980H9 - Sugar phosphate nucleotydyl transferase

UniProt:	Q980H9	Sequences: MVSAIVLAGGYATRLRPLSLTKPKALFPILNKPILGYILESLINSDVSDIYLSLRVMADKIIDYLKDTSMLDKVKIEVESEPLGDAGPLKLISQKYNLDDDVLVIYGDIYSEINIKSLLDFYYKKSCDAVVVGTEVEDPRRYGVLYTENDVLVELIEKPKKPISNLINGGVYIFKKDLFKLVETPSSISKDFLPKLLRTKSISVYKYHGIWADIGVPDDYLRLNFEVLVQKYPKGYINSSAKVSEKSTLIPPYYIGSKNVIGEDAYITSNTILGNDVEIGKGTYISESILMNKVQVKEYTYISGSIIADKTKIGRWNHILDGSILGEEVITSDGVLINRRTIILPNKEVKEHVYDKGKIIL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	361 (313)
Sequences:	8807 (5911)
Seq/√Len:	334.1

ECOLI - GLGC GLMU RMLA2 RMLA1 GALF
BACSU - GLMU GLGC GLGD RMLA YNGB RFBF
HALSA - Q9HSZ9 Q9HSZ8 Q9HS61 Q9HQQ4 Q9HSV0
SULSO - Q980H9 Q97ZD1 Q7LXK9 Q980D4 Q7LXE7 Q97XG0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
285_I	288_S	4.013	1.00
135_E	165_N	3.299	1.00
302_I	305_S	3.251	1.00
122_Y	130_V	3.136	1.00
286_S	303_S	3.011	1.00
276_D	293_K	2.807	1.00
287_E	304_G	2.778	1.00
158_K	162_P	2.758	1.00
32_K	40_E	2.631	1.00
148_E	151_V	2.550	1.00
281_K	298_E	2.533	1.00
135_E	206_K	2.434	1.00
93_S	183_E	2.425	1.00
146_Y	164_S	2.369	1.00
184_T	199_T	2.246	1.00
256_G	275_N	2.206	1.00
290_L	296_V	2.200	1.00
120_D	124_K	2.186	1.00
101_D	123_Y	2.181	1.00
280_G	298_E	2.181	1.00
274_G	292_N	2.174	1.00
278_E	295_Q	2.160	1.00
275_N	292_N	2.147	1.00
269_S	286_S	2.130	1.00
154_E	161_K	2.105	1.00
127_C	203_S	2.075	1.00
4_A	47_V	2.049	1.00
257_S	275_N	2.047	1.00
118_L	132_V	1.984	1.00
254_Y	272_I	1.949	1.00
128_D	175_K	1.943	1.00
36_G	64_Y	1.942	1.00
282_G	299_Y	1.938	1.00
102_V	176_K	1.924	1.00
121_F	125_K	1.915	1.00
148_E	153_V	1.870	1.00
22_K	28_P	1.870	1.00
146_Y	154_E	1.846	1.00
21_T	276_D	1.818	1.00
297_K	315_R	1.809	1.00
4_A	42_L	1.802	1.00
133_G	204_V	1.779	1.00
288_S	302_I	1.758	1.00
101_D	175_K	1.749	1.00
152_L	204_V	1.744	1.00
272_I	289_I	1.741	1.00
259_N	277_V	1.727	1.00
293_K	310_K	1.719	1.00
290_L	294_V	1.718	1.00
140_R	158_K	1.710	1.00
39_L	50_I	1.695	1.00
151_V	201_S	1.693	1.00
294_V	311_T	1.686	1.00
118_L	173_I	1.669	1.00
273_L	279_I	1.666	1.00
252_P	270_N	1.662	1.00
264_D	282_G	1.657	1.00
267_I	271_T	1.646	1.00
236_Y	239_S	1.628	1.00
83_L	87_G	1.618	1.00
298_E	315_R	1.614	1.00
214_I	223_L	1.604	1.00
49_D	75_K	1.597	1.00
51_Y	77_E	1.590	1.00
307_I	311_T	1.577	1.00
180_K	184_T	1.575	1.00
260_V	278_E	1.573	1.00
116_K	120_D	1.572	1.00
283_T	300_T	1.565	1.00
121_F	205_Y	1.558	1.00
273_L	277_V	1.541	1.00
270_N	287_E	1.513	1.00
35_L	65_L	1.498	1.00
284_Y	301_Y	1.455	1.00
58_A	62_I	1.451	1.00
125_K	203_S	1.450	1.00
307_I	313_I	1.446	1.00
285_I	290_L	1.413	1.00
36_G	40_E	1.412	1.00
42_L	105_I	1.397	1.00
104_V	174_F	1.392	1.00
295_Q	312_K	1.382	1.00
238_N	241_A	1.361	1.00
87_G	90_K	1.349	1.00
181_L	199_T	1.346	1.00
118_L	130_V	1.345	1.00
181_L	195_K	1.345	1.00
119_L	173_I	1.332	1.00
271_T	285_I	1.323	1.00
87_G	91_L	1.315	1.00
301_Y	318_H	1.298	1.00
262_G	281_K	1.297	1.00
58_A	78_V	1.290	1.00
141_R	158_K	1.285	1.00
151_V	203_S	1.279	1.00
194_P	198_R	1.278	1.00
129_A	196_L	1.276	1.00
277_V	294_V	1.275	1.00
236_Y	255_I	1.270	1.00
128_D	201_S	1.269	1.00
253_Y	267_I	1.265	1.00
216_V	238_N	1.259	1.00
262_G	278_E	1.255	1.00
291_M	309_D	1.246	1.00
228_L	231_K	1.239	1.00
180_K	199_T	1.232	1.00
195_K	199_T	1.221	1.00
280_G	295_Q	1.219	1.00
235_G	238_N	1.218	1.00
54_L	58_A	1.217	1.00
133_G	145_L	1.210	1.00
146_Y	156_I	1.210	1.00
101_D	173_I	1.202	1.00
249_L	253_Y	1.201	1.00
147_T	166_L	1.199	1.00
49_D	73_K	1.193	1.00
34_I	214_I	1.189	1.00
297_K	312_K	1.179	1.00
51_Y	95_K	1.176	1.00
74_V	78_V	1.174	1.00
187_S	190_K	1.171	1.00
36_G	68_T	1.170	1.00
299_Y	316_W	1.168	1.00
218_D	238_N	1.161	1.00
59_D	63_D	1.153	1.00
280_G	297_K	1.152	1.00
26_L	64_Y	1.151	1.00
294_V	307_I	1.150	1.00
303_S	320_L	1.146	1.00
117_S	120_D	1.140	1.00
292_N	309_D	1.137	1.00
274_G	277_V	1.127	1.00
29_I	224_N	1.120	1.00
106_Y	109_I	1.116	1.00
147_T	204_V	1.112	1.00
184_T	195_K	1.110	1.00
236_Y	241_A	1.108	1.00
235_G	239_S	1.107	1.00
103_L	173_I	1.103	1.00
74_V	77_E	1.098	1.00
105_I	115_I	1.094	1.00
23_P	60_K	1.086	1.00
256_G	259_N	1.085	1.00
262_G	265_A	1.084	1.00
66_K	76_I	1.084	1.00
60_K	63_D	1.079	1.00
237_I	241_A	1.073	1.00
168_N	172_Y	1.068	1.00
177_D	180_K	1.061	1.00
268_T	286_S	1.059	1.00
156_I	163_I	1.054	1.00
300_T	315_R	1.049	1.00
259_N	292_N	1.048	1.00
133_G	166_L	1.046	1.00
159_P	187_S	1.045	1.00
228_L	232_Y	1.038	1.00
100_D	176_K	1.035	1.00
99_D	177_D	1.029	1.00
89_L	104_V	1.029	1.00
259_N	275_N	1.028	1.00
112_E	210_I	1.027	1.00
114_N	117_S	1.027	1.00
33_P	36_G	1.026	1.00
55_R	82_P	1.024	1.00
255_I	259_N	1.020	1.00
90_K	93_S	1.017	1.00
290_L	307_I	1.016	1.00
300_T	317_N	1.013	1.00
62_I	78_V	1.010	1.00
25_A	107_G	1.005	1.00
22_K	60_K	1.001	1.00
28_P	33_P	0.999	1.00
210_I	226_E	0.996	1.00
138_D	141_R	0.994	1.00
276_D	292_N	0.992	1.00
300_T	313_I	0.980	1.00
216_V	219_D	0.977	1.00
240_S	244_S	0.971	1.00
227_V	231_K	0.965	1.00
137_E	165_N	0.965	1.00
250_I	253_Y	0.959	1.00
138_D	158_K	0.957	1.00
121_F	203_S	0.955	1.00
245_E	248_T	0.947	1.00
218_D	222_R	0.946	1.00
277_V	290_L	0.939	1.00
21_T	257_S	0.937	1.00
103_L	119_L	0.926	1.00
244_S	260_V	0.917	1.00
90_K	183_E	0.917	1.00
82_P	87_G	0.913	1.00
57_M	60_K	0.910	1.00
129_A	174_F	0.908	1.00
212_A	222_R	0.905	1.00
131_V	145_L	0.905	1.00
255_I	261_I	0.904	1.00
33_P	64_Y	0.903	1.00
280_G	283_T	0.898	1.00
235_G	241_A	0.896	1.00
136_V	167_I	0.895	1.00
65_L	74_V	0.895	1.00
6_V	42_L	0.893	1.00
174_F	192_F	0.889	1.00
250_I	268_T	0.885	1.00
237_I	240_S	0.884	1.00
143_G	157_E	0.878	1.00
12_A	24_K	0.878	1.00
192_F	195_K	0.877	1.00
268_T	284_Y	0.871	1.00
229_V	232_Y	0.870	1.00
239_S	242_K	0.862	1.00
43_I	68_T	0.858	1.00
282_G	298_E	0.857	1.00
35_L	52_L	0.857	1.00
26_L	60_K	0.856	1.00
121_F	124_K	0.850	1.00
131_V	152_L	0.848	1.00
100_D	175_K	0.848	1.00
119_L	123_Y	0.846	1.00
145_L	152_L	0.846	1.00
117_S	121_F	0.843	1.00
55_R	87_G	0.843	1.00
191_D	195_K	0.843	1.00
287_E	303_S	0.841	1.00
241_A	244_S	0.841	1.00
229_V	233_P	0.841	1.00
144_V	167_I	0.840	1.00
23_P	57_M	0.839	1.00
302_I	307_I	0.839	1.00
284_Y	298_E	0.839	1.00
35_L	61_I	0.833	1.00
197_L	202_I	0.829	1.00
195_K	198_R	0.823	1.00
134_T	167_I	0.822	1.00
103_L	115_I	0.821	1.00
289_I	306_I	0.820	1.00
212_A	226_E	0.819	1.00
54_L	62_I	0.818	1.00
265_A	281_K	0.813	1.00
52_L	65_L	0.812	1.00
246_K	250_I	0.811	1.00
5_I	102_V	0.811	1.00
235_G	240_S	0.809	1.00
294_V	313_I	0.808	1.00
42_L	47_V	0.798	1.00
24_K	108_D	0.797	1.00
43_I	69_S	0.796	1.00
156_I	161_K	0.792	1.00
294_V	308_A	0.792	1.00
261_I	265_A	0.791	1.00
277_V	291_M	0.791	1.00
299_Y	315_R	0.791	1.00
226_E	229_V	0.788	1.00
54_L	76_I	0.787	1.00
59_D	62_I	0.786	1.00
180_K	183_E	0.786	1.00
136_V	165_N	0.784	1.00
191_D	194_P	0.784	1.00
225_F	245_E	0.783	1.00
244_S	263_E	0.780	1.00
236_Y	240_S	0.772	1.00
222_R	225_F	0.771	1.00
5_I	51_Y	0.770	1.00
166_L	206_K	0.769	1.00
41_S	113_I	0.769	1.00
237_I	242_K	0.767	1.00
256_G	292_N	0.766	1.00
268_T	271_T	0.763	1.00
30_L	227_V	0.762	1.00
267_I	273_L	0.761	1.00
297_K	314_G	0.758	1.00
5_I	89_L	0.756	1.00
146_Y	153_V	0.756	1.00
291_M	294_V	0.754	1.00
300_T	314_G	0.754	1.00
256_G	274_G	0.749	0.99
234_K	238_N	0.748	0.99
38_I	105_I	0.747	0.99
152_L	202_I	0.747	0.99
185_P	191_D	0.747	0.99
239_S	244_S	0.745	0.99
161_K	164_S	0.744	0.99
283_T	315_R	0.744	0.99
93_S	179_F	0.742	0.99
283_T	298_E	0.738	0.99
14_R	24_K	0.737	0.99
37_Y	227_V	0.736	0.99
137_E	208_H	0.736	0.99
262_G	268_T	0.734	0.99
181_L	184_T	0.733	0.99
43_I	50_I	0.730	0.99
62_I	76_I	0.728	0.99
75_K	78_V	0.727	0.99
6_V	39_L	0.721	0.99
291_M	306_I	0.721	0.99
314_G	317_N	0.719	0.99
33_P	37_Y	0.717	0.99
151_V	197_L	0.715	0.99
181_L	196_L	0.715	0.99
302_I	319_I	0.712	0.99
30_L	224_N	0.711	0.99
45_S	115_I	0.710	0.99
186_S	190_K	0.710	0.99
186_S	189_S	0.709	0.99
263_E	281_K	0.707	0.99
51_Y	92_I	0.702	0.99
79_E	82_P	0.700	0.99
136_V	208_H	0.699	0.99
258_K	275_N	0.695	0.99
21_T	275_N	0.694	0.99
127_C	201_S	0.692	0.99
36_G	65_L	0.691	0.99
266_Y	284_Y	0.689	0.99
259_N	265_A	0.688	0.99
133_G	152_L	0.685	0.99
10_G	24_K	0.680	0.99
111_S	171_V	0.677	0.99
262_G	283_T	0.675	0.99
283_T	296_V	0.670	0.99
126_S	175_K	0.667	0.99
277_V	292_N	0.663	0.99
31_N	254_Y	0.662	0.99
134_T	211_W	0.662	0.99
194_P	197_L	0.656	0.99
53_S	88_P	0.656	0.99
7_L	106_Y	0.655	0.99
37_Y	40_E	0.652	0.99
129_A	202_I	0.651	0.99
40_E	44_N	0.650	0.99
186_S	191_D	0.650	0.99
181_L	192_F	0.649	0.99
225_F	228_L	0.644	0.98
248_T	266_Y	0.644	0.98
34_I	38_I	0.643	0.98
244_S	247_S	0.642	0.98
96_Y	100_D	0.642	0.98
106_Y	170_G	0.641	0.98
29_I	34_I	0.641	0.98
236_Y	242_K	0.640	0.98
79_E	87_G	0.639	0.98
261_I	267_I	0.637	0.98
153_V	197_L	0.637	0.98
49_D	97_N	0.635	0.98
256_G	272_I	0.634	0.98
208_H	211_W	0.633	0.98
220_Y	291_M	0.631	0.98
77_E	92_I	0.631	0.98
122_Y	175_K	0.627	0.98
262_G	280_G	0.626	0.98
212_A	223_L	0.625	0.98
238_N	242_K	0.625	0.98
255_I	273_L	0.623	0.98
301_Y	316_W	0.623	0.98
291_M	308_A	0.620	0.98
81_E	87_G	0.620	0.98
25_A	61_I	0.619	0.98
127_C	130_V	0.619	0.98
283_T	299_Y	0.618	0.98
32_K	37_Y	0.616	0.98
47_V	119_L	0.613	0.98
236_Y	244_S	0.612	0.98
185_P	188_I	0.612	0.98
6_V	38_I	0.612	0.98
274_G	289_I	0.612	0.98
237_I	244_S	0.612	0.98
265_A	283_T	0.609	0.98
41_S	44_N	0.609	0.98
226_E	230_Q	0.606	0.98
63_D	66_K	0.606	0.98
229_V	270_N	0.602	0.98
90_K	182_V	0.602	0.98
10_G	14_R	0.600	0.98
54_L	61_I	0.600	0.98
100_D	177_D	0.599	0.98
41_S	115_I	0.598	0.98
66_K	69_S	0.598	0.98
132_V	171_V	0.597	0.98
296_V	302_I	0.596	0.97
75_K	95_K	0.595	0.97
117_S	205_Y	0.594	0.97
39_L	65_L	0.594	0.97
44_N	113_I	0.592	0.97
193_L	196_L	0.592	0.97
16_R	20_L	0.591	0.97
40_E	43_I	0.589	0.97
169_G	211_W	0.588	0.97
65_L	76_I	0.586	0.97
294_V	309_D	0.585	0.97
41_S	45_S	0.583	0.97
98_L	101_D	0.583	0.97
145_L	166_L	0.580	0.97
108_D	213_D	0.578	0.97
296_V	300_T	0.577	0.97
185_P	190_K	0.573	0.97
129_A	193_L	0.572	0.97
120_D	123_Y	0.571	0.97
7_L	53_S	0.569	0.97
259_N	262_G	0.569	0.97
105_I	171_V	0.568	0.97
230_Q	233_P	0.568	0.97
285_I	302_I	0.567	0.97
242_K	260_V	0.566	0.97
9_G	53_S	0.565	0.97
241_A	261_I	0.565	0.97
130_V	205_Y	0.565	0.97
166_L	204_V	0.563	0.96
30_L	37_Y	0.555	0.96
264_D	267_I	0.554	0.96
207_Y	211_W	0.554	0.96
245_E	250_I	0.553	0.96
259_N	274_G	0.551	0.96
68_T	72_D	0.550	0.96
266_Y	271_T	0.549	0.96
312_K	315_R	0.548	0.96
154_E	194_P	0.548	0.96
308_A	311_T	0.548	0.96
258_K	276_D	0.547	0.96
246_K	263_E	0.547	0.96
243_V	247_S	0.546	0.96
115_I	118_L	0.545	0.96
252_P	269_S	0.545	0.96
174_F	178_L	0.543	0.96
128_D	178_L	0.543	0.96
26_L	35_L	0.542	0.96
141_R	219_D	0.540	0.96
70_M	74_V	0.539	0.95
236_Y	243_V	0.537	0.95
106_Y	172_Y	0.535	0.95
134_T	169_G	0.534	0.95
259_N	273_L	0.533	0.95
136_V	139_P	0.530	0.95
140_R	160_K	0.530	0.95
139_P	142_Y	0.528	0.95
246_K	264_D	0.527	0.95
54_L	78_V	0.527	0.95
8_A	52_L	0.525	0.95
65_L	68_T	0.525	0.95
228_L	233_P	0.524	0.95
157_E	168_N	0.523	0.95
4_A	45_S	0.523	0.95
301_Y	304_G	0.522	0.95
153_V	156_I	0.519	0.94
250_I	269_S	0.518	0.94
185_P	189_S	0.518	0.94
222_R	226_E	0.518	0.94
286_S	301_Y	0.517	0.94
219_D	222_R	0.517	0.94
139_P	144_V	0.515	0.94
14_R	25_A	0.515	0.94
305_S	319_I	0.515	0.94
85_D	108_D	0.515	0.94
152_L	155_L	0.514	0.94
212_A	219_D	0.514	0.94
284_Y	297_K	0.513	0.94
249_L	261_I	0.512	0.94
243_V	261_I	0.512	0.94
98_L	177_D	0.512	0.94
29_I	223_L	0.509	0.94
98_L	176_K	0.509	0.94
209_G	212_A	0.508	0.94
305_S	308_A	0.506	0.94
62_I	66_K	0.506	0.94
149_N	153_V	0.506	0.94
40_E	68_T	0.505	0.94
53_S	79_E	0.504	0.94
235_G	244_S	0.504	0.94
253_Y	271_T	0.504	0.94
4_A	46_D	0.501	0.93
295_Q	298_E	0.501	0.93
7_L	88_P	0.500	0.93

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ggoA	3	0.9584	100	0.367	Contact Map
3brkX	2	0.9363	100	0.375	Contact Map
1yp2A	4	0.9529	100	0.38	Contact Map
4g3qA	3	0.9889	100	0.42	Contact Map
1hm9A	3	0.9751	100	0.423	Contact Map
2v0hA	3	0.9723	100	0.434	Contact Map
4fceA	3	0.9584	100	0.442	Contact Map
2icyA	1	0.8338	100	0.531	Contact Map
2i5kA	5	0.8393	100	0.56	Contact Map
3jukA	3	0.6343	100	0.57	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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