Q980H4 - SULSO - GREMLIN Contacts

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Q980H4 - NADH dehydrogenase subunit C (NuoC)

UniProt:	Q980H4	Sequences: MGDEKMSEALKSLVNDLQTKFKCQAKIESDRRITVIVPDKKIIRDVASFLKDFGFDHVKAVTGIDYPEHEKLEVVYHISSYSNLDLAKIILALRTTVSYKDPSLPSLYSIFESAWTGERETYEMLGIRFEGHPDLRRFFLDEDFEGVYPLRKSYKIKLEGVFVDKPTTE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	169 (142)
Sequences:	2719 (1693)
Seq/√Len:	142.0

ECOLI - NUOCD HYCE HYFG
HALSA - Q9HRL9
SULSO - Q980H4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
47_A	107_L	4.587	1.00
44_R	109_S	3.678	1.00
103_S	130_E	3.051	1.00
47_A	93_L	2.854	1.00
105_P	130_E	2.652	1.00
43_I	76_Y	2.612	1.00
47_A	78_I	2.180	1.00
48_S	52_D	2.129	1.00
42_I	45_D	2.080	1.00
44_R	110_I	2.057	1.00
74_V	129_F	2.029	1.00
63_G	125_L	1.986	1.00
115_W	132_H	1.981	1.00
72_L	127_I	1.938	1.00
58_V	114_A	1.928	1.00
47_A	111_F	1.924	1.00
38_P	41_K	1.893	1.00
62_T	75_V	1.844	1.00
107_L	114_A	1.756	1.00
144_F	154_Y	1.703	1.00
124_M	139_F	1.695	1.00
56_D	82_S	1.639	1.00
80_S	83_N	1.635	1.00
83_N	89_I	1.611	1.00
43_I	47_A	1.587	1.00
15_N	19_T	1.583	1.00
56_D	81_Y	1.581	1.00
73_E	96_T	1.576	1.00
141_D	144_F	1.542	1.00
21_F	49_F	1.528	1.00
98_S	101_D	1.486	1.00
79_S	90_I	1.480	1.00
106_S	109_S	1.480	1.00
58_V	61_V	1.476	1.00
112_E	115_W	1.453	1.00
24_Q	42_I	1.450	1.00
21_F	46_V	1.446	1.00
58_V	113_S	1.443	1.00
54_G	82_S	1.441	1.00
105_P	131_G	1.421	1.00
121_T	129_F	1.420	1.00
34_T	77_H	1.410	1.00
78_I	107_L	1.404	1.00
44_R	48_S	1.403	1.00
74_V	104_L	1.385	1.00
76_Y	107_L	1.385	1.00
95_T	104_L	1.374	1.00
49_F	53_F	1.364	1.00
37_V	46_V	1.345	1.00
123_E	137_R	1.329	1.00
14_V	18_Q	1.317	1.00
132_H	135_L	1.311	1.00
77_H	92_A	1.270	1.00
38_P	42_I	1.257	1.00
40_K	101_D	1.233	1.00
15_N	18_Q	1.221	1.00
63_G	127_I	1.179	1.00
74_V	127_I	1.156	0.99
57_H	81_Y	1.155	0.99
103_S	128_R	1.139	0.99
36_I	96_T	1.117	0.99
63_G	121_T	1.113	0.99
32_R	92_A	1.106	0.99
62_T	77_H	1.082	0.99
34_T	92_A	1.077	0.99
124_M	148_Y	1.074	0.99
16_D	53_F	1.055	0.99
50_L	91_L	1.044	0.99
20_K	49_F	1.034	0.99
140_L	144_F	1.031	0.99
61_V	76_Y	1.014	0.99
69_H	73_E	1.014	0.99
44_R	105_P	1.007	0.99
65_D	71_K	0.998	0.98
36_I	94_R	0.987	0.98
123_E	138_F	0.986	0.98
48_S	110_I	0.984	0.98
113_S	117_G	0.983	0.98
54_G	83_N	0.979	0.98
155_K	158_L	0.975	0.98
43_I	93_L	0.960	0.98
64_I	75_V	0.957	0.98
66_Y	73_E	0.953	0.98
124_M	140_L	0.941	0.98
99_Y	102_P	0.940	0.98
45_D	48_S	0.937	0.98
78_I	111_F	0.926	0.98
43_I	105_P	0.920	0.97
43_I	95_T	0.899	0.97
79_S	88_K	0.898	0.97
72_L	99_Y	0.886	0.97
154_Y	160_G	0.882	0.97
61_V	74_V	0.869	0.96
16_D	19_T	0.865	0.96
61_V	121_T	0.859	0.96
14_V	19_T	0.849	0.96
57_H	113_S	0.849	0.96
122_Y	135_L	0.848	0.96
24_Q	45_D	0.841	0.96
44_R	106_S	0.834	0.95
97_V	104_L	0.822	0.95
108_Y	133_P	0.820	0.95
63_G	74_V	0.819	0.95
62_T	121_T	0.814	0.95
40_K	105_P	0.813	0.95
54_G	80_S	0.800	0.94
44_R	107_L	0.782	0.94
18_Q	22_K	0.773	0.93
143_D	154_Y	0.761	0.93
99_Y	155_K	0.757	0.92
25_A	38_P	0.755	0.92
107_L	111_F	0.752	0.92
115_W	133_P	0.751	0.92
62_T	92_A	0.745	0.92
60_A	77_H	0.742	0.92
35_V	46_V	0.742	0.92
40_K	95_T	0.737	0.91
73_E	94_R	0.732	0.91
46_V	49_F	0.729	0.91
47_A	76_Y	0.723	0.91
17_L	27_I	0.723	0.91
26_K	38_P	0.722	0.91
60_A	117_G	0.721	0.91
122_Y	132_H	0.719	0.90
18_Q	23_C	0.718	0.90
37_V	42_I	0.716	0.90
59_K	79_S	0.709	0.90
76_Y	133_P	0.702	0.89
26_K	36_I	0.702	0.89
75_V	92_A	0.692	0.89
53_F	89_I	0.692	0.89
108_Y	114_A	0.691	0.89
48_S	109_S	0.685	0.88
125_L	150_L	0.685	0.88
22_K	25_A	0.683	0.88
13_L	17_L	0.682	0.88
35_V	93_L	0.682	0.88
34_T	94_R	0.682	0.88
14_V	17_L	0.681	0.88
30_D	34_T	0.672	0.87
16_D	20_K	0.671	0.87
80_S	88_K	0.662	0.86
24_Q	27_I	0.657	0.86
122_Y	148_Y	0.656	0.86
116_T	132_H	0.656	0.86
141_D	160_G	0.656	0.86
80_S	89_I	0.652	0.86
14_V	27_I	0.650	0.85
137_R	144_F	0.639	0.84
122_Y	128_R	0.638	0.84
20_K	45_D	0.637	0.84
14_V	20_K	0.635	0.84
19_T	23_C	0.630	0.84
124_M	150_L	0.630	0.84
16_D	49_F	0.616	0.82
117_G	139_F	0.614	0.82
144_F	159_E	0.614	0.82
19_T	22_K	0.611	0.82
67_P	127_I	0.607	0.81
108_Y	132_H	0.607	0.81
76_Y	95_T	0.605	0.81
123_E	148_Y	0.602	0.81
126_G	149_P	0.598	0.80
99_Y	153_S	0.591	0.80
69_H	96_T	0.588	0.79
60_A	90_I	0.585	0.79
17_L	22_K	0.582	0.78
116_T	138_F	0.580	0.78
61_V	113_S	0.579	0.78
15_N	26_K	0.578	0.78
78_I	110_I	0.578	0.78
36_I	73_E	0.574	0.78
140_L	154_Y	0.571	0.77
79_S	142_E	0.568	0.77
141_D	158_L	0.567	0.77
121_T	127_I	0.563	0.76
24_Q	38_P	0.560	0.76
117_G	121_T	0.560	0.76
107_L	110_I	0.559	0.76
60_A	121_T	0.559	0.76
108_Y	115_W	0.558	0.76
62_T	117_G	0.557	0.75
71_K	153_S	0.555	0.75
46_V	93_L	0.551	0.75
94_R	150_L	0.549	0.74
17_L	25_A	0.542	0.73
68_E	98_S	0.540	0.73
137_R	140_L	0.538	0.73
19_T	70_E	0.537	0.73
128_R	131_G	0.536	0.73
115_W	138_F	0.535	0.72
135_L	138_F	0.534	0.72
18_Q	25_A	0.533	0.72
40_K	96_T	0.532	0.72
18_Q	27_I	0.532	0.72
60_A	155_K	0.531	0.72
97_V	102_P	0.528	0.72
13_L	16_D	0.528	0.72
101_D	128_R	0.515	0.70
56_D	80_S	0.515	0.70
61_V	129_F	0.515	0.70
50_L	55_F	0.513	0.69
44_R	131_G	0.512	0.69
141_D	154_Y	0.512	0.69
28_E	36_I	0.509	0.69
40_K	98_S	0.509	0.69
140_L	149_P	0.508	0.69
146_G	160_G	0.507	0.68
116_T	121_T	0.505	0.68
104_L	129_F	0.505	0.68
54_G	89_I	0.505	0.68
58_V	123_E	0.500	0.67
48_S	51_K	0.500	0.67

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3i9v5	1	0.9349	100	0.266	Contact Map
3mcrA	2	0.7751	100	0.401	Contact Map
3onhA	1	0.6036	14.3	0.95	Contact Map
1wthA	3	0.8462	14	0.95	Contact Map
1d1rA	1	0.355	12.9	0.951	Contact Map
4f3qA	1	0.6272	8.4	0.955	Contact Map
2if1A	1	0.3787	7.2	0.957	Contact Map
2wa0A	1	0.9172	6.7	0.957	Contact Map
2yvqA	2	0.7396	6.6	0.957	Contact Map
2bcqA	1	0.7515	6.4	0.958	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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