Q980G2 - SULSO - GREMLIN Contacts

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Q980G2 - Uncharacterized protein

UniProt:	Q980G2	Sequences: MYFTDVFREAYLDYKYFLNRDYSRKVVLDIIAAKYNLSSLERLLLYRCVHSDKEIEIIKGKINNEEREVVLDGYNLALTLISAINNDELYLCDDGFLRDLGLGRHKSSEIISDTLILISEYCEKYRIKCEIILDKQLSKSGEITSKLRKKGIEIRTVNKADKEIIISNKAVYSNDFVILFKSQKISTILNTIFFESTFKILKGPWIANLEEKL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	213 (189)
Sequences:	170 (154)
Seq/√Len:	11.2

SULSO - Q980G2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
29_D	33_A	5.502	1.00
133_L	147_L	4.444	1.00
58_I	180_F	3.740	0.99
144_T	148_R	3.442	0.98
74_Y	80_L	3.146	0.96
78_L	81_I	2.886	0.93
27_V	37_L	2.858	0.93
81_I	111_I	2.853	0.93
42_R	47_R	2.555	0.88
81_I	105_H	2.503	0.87
105_H	111_I	2.449	0.86
78_L	111_I	2.433	0.85
13_D	16_Y	2.397	0.85
76_L	189_L	2.318	0.82
134_D	138_S	2.306	0.82
78_L	105_H	2.258	0.81
19_N	52_D	2.245	0.80
69_V	172_Y	2.073	0.75
103_G	137_L	2.056	0.74
69_V	154_I	2.054	0.74
76_L	187_T	2.048	0.74
41_E	187_T	2.039	0.73
13_D	35_Y	1.994	0.72
68_E	128_K	1.971	0.71
74_Y	165_I	1.948	0.70
16_Y	91_L	1.842	0.65
20_R	35_Y	1.797	0.63
20_R	33_A	1.774	0.62
63_N	86_N	1.769	0.62
133_L	154_I	1.749	0.61
32_A	69_V	1.718	0.60
142_E	185_I	1.683	0.58
186_S	191_T	1.675	0.58
33_A	110_I	1.587	0.53
131_I	171_V	1.569	0.52
30_I	34_K	1.563	0.52
84_I	117_L	1.559	0.52
13_D	19_N	1.556	0.52
144_T	156_T	1.543	0.51
74_Y	100_L	1.511	0.50
16_Y	172_Y	1.496	0.49
74_Y	143_I	1.470	0.48
68_E	130_E	1.449	0.47
59_K	178_I	1.393	0.44
147_L	154_I	1.378	0.43
40_L	142_E	1.378	0.43
59_K	173_S	1.377	0.43
85_N	139_K	1.370	0.43
40_L	185_I	1.365	0.43
33_A	105_H	1.359	0.42
69_V	173_S	1.327	0.41
125_Y	186_S	1.306	0.40
90_Y	101_G	1.287	0.39
157_V	163_E	1.267	0.38
13_D	20_R	1.263	0.38
128_K	153_E	1.256	0.38
27_V	160_A	1.253	0.37
119_S	150_K	1.247	0.37
121_Y	125_Y	1.241	0.37
134_D	174_N	1.239	0.37
56_E	124_K	1.235	0.37
83_A	158_N	1.225	0.36
16_Y	128_K	1.210	0.35
96_F	185_I	1.208	0.35
65_E	126_R	1.203	0.35
32_A	41_E	1.192	0.35
15_K	23_S	1.187	0.34
122_C	129_C	1.185	0.34
24_R	77_A	1.178	0.34
35_Y	159_K	1.175	0.34
34_K	42_R	1.172	0.34
27_V	64_N	1.172	0.34
128_K	144_T	1.140	0.32
36_N	87_D	1.135	0.32
90_Y	172_Y	1.128	0.32
41_E	139_K	1.125	0.32
39_S	182_S	1.116	0.31
40_L	139_K	1.099	0.31
50_H	92_C	1.078	0.30
41_E	108_S	1.076	0.30
9_E	194_F	1.063	0.29
67_R	126_R	1.040	0.28
41_E	104_R	1.032	0.28
124_K	195_E	1.016	0.27
108_S	139_K	1.008	0.27
53_K	124_K	1.007	0.27
70_V	181_K	1.007	0.27
41_E	142_E	1.006	0.27
47_R	79_T	0.998	0.27
73_G	133_L	0.984	0.26
115_L	131_I	0.983	0.26
104_R	139_K	0.983	0.26
87_D	101_G	0.967	0.26
44_L	185_I	0.963	0.25
154_I	163_E	0.962	0.25
55_I	92_C	0.951	0.25
104_R	142_E	0.950	0.25
156_T	160_A	0.945	0.25
182_S	185_I	0.944	0.25
188_I	193_F	0.944	0.25
54_E	144_T	0.935	0.24
40_L	114_T	0.932	0.24
66_E	122_C	0.931	0.24
91_L	127_I	0.917	0.24
50_H	127_I	0.909	0.23
32_A	185_I	0.905	0.23
11_Y	37_L	0.901	0.23
131_I	152_I	0.900	0.23
74_Y	140_S	0.899	0.23
16_Y	76_L	0.886	0.23
53_K	56_E	0.873	0.22
66_E	195_E	0.866	0.22
43_L	122_C	0.862	0.22
25_K	28_L	0.861	0.22
103_G	144_T	0.852	0.22
133_L	177_V	0.849	0.21
40_L	85_N	0.846	0.21
40_L	136_Q	0.838	0.21
139_K	142_E	0.823	0.21
9_E	86_N	0.815	0.20
10_A	17_F	0.812	0.20
11_Y	15_K	0.811	0.20
53_K	135_K	0.810	0.20
56_E	60_G	0.810	0.20
153_E	190_N	0.810	0.20
57_I	69_V	0.808	0.20
85_N	127_I	0.797	0.20
36_N	82_S	0.793	0.20
13_D	77_A	0.792	0.20
54_E	97_L	0.787	0.19
116_I	178_I	0.787	0.19
63_N	66_E	0.785	0.19
59_K	181_K	0.785	0.19
43_L	152_I	0.785	0.19
56_E	66_E	0.784	0.19
29_D	76_L	0.782	0.19
125_Y	191_T	0.782	0.19
56_E	59_K	0.781	0.19
61_K	140_S	0.777	0.19
74_Y	176_F	0.776	0.19
15_K	93_D	0.775	0.19
64_N	167_S	0.775	0.19
63_N	143_I	0.774	0.19
49_V	150_K	0.771	0.19
7_F	122_C	0.766	0.19
6_V	107_S	0.764	0.19
79_T	133_L	0.761	0.19
14_Y	127_I	0.760	0.19
59_K	193_F	0.750	0.18
12_L	31_I	0.735	0.18
31_I	112_S	0.732	0.18
19_N	157_V	0.732	0.18
39_S	160_A	0.728	0.18
58_I	134_D	0.725	0.18
74_Y	161_D	0.724	0.18
54_E	134_D	0.722	0.18
135_K	194_F	0.722	0.18
18_L	45_L	0.721	0.18
112_S	146_K	0.721	0.18
38_S	131_I	0.718	0.17
44_L	102_L	0.717	0.17
12_L	63_N	0.710	0.17
26_V	160_A	0.710	0.17
89_L	168_N	0.705	0.17
47_R	101_G	0.705	0.17
172_Y	183_Q	0.703	0.17
154_I	192_I	0.700	0.17
14_Y	27_V	0.700	0.17
33_A	57_I	0.696	0.17
102_L	108_S	0.694	0.17
40_L	44_L	0.693	0.17
106_K	162_K	0.692	0.17
7_F	84_I	0.689	0.17
148_R	154_I	0.687	0.17
33_A	50_H	0.686	0.17
7_F	188_I	0.685	0.17
6_V	16_Y	0.685	0.17
93_D	142_E	0.684	0.17
42_R	143_I	0.683	0.17
10_A	103_G	0.678	0.16
38_S	133_L	0.674	0.16
30_I	87_D	0.672	0.16
80_L	100_L	0.669	0.16
32_A	89_L	0.667	0.16
31_I	55_I	0.666	0.16
10_A	35_Y	0.660	0.16
30_I	165_I	0.657	0.16
42_R	171_V	0.653	0.16
73_G	154_I	0.651	0.16
58_I	103_G	0.649	0.16
54_E	118_I	0.642	0.15
97_L	123_E	0.641	0.15
20_R	57_I	0.638	0.15
34_K	186_S	0.636	0.15
31_I	54_E	0.632	0.15
11_Y	82_S	0.631	0.15
75_N	98_R	0.630	0.15
72_D	75_N	0.630	0.15
99_D	175_D	0.630	0.15
75_N	99_D	0.630	0.15
72_D	175_D	0.630	0.15
72_D	99_D	0.630	0.15
72_D	98_R	0.630	0.15
75_N	175_D	0.630	0.15
98_R	175_D	0.630	0.15
112_S	135_K	0.629	0.15
30_I	132_I	0.626	0.15
85_N	101_G	0.626	0.15
16_Y	55_I	0.624	0.15
118_I	194_F	0.623	0.15
173_S	178_I	0.622	0.15
159_K	162_K	0.621	0.15
83_A	101_G	0.621	0.15
63_N	74_Y	0.620	0.15
62_I	104_R	0.620	0.15
44_L	104_R	0.619	0.15
12_L	167_S	0.618	0.15
28_L	46_Y	0.616	0.15
6_V	120_E	0.614	0.15
25_K	29_D	0.612	0.15
69_V	115_L	0.609	0.15
11_Y	165_I	0.601	0.14
179_L	188_I	0.598	0.14
42_R	79_T	0.595	0.14
26_V	29_D	0.593	0.14
43_L	115_L	0.591	0.14
80_L	165_I	0.586	0.14
21_D	173_S	0.585	0.14
53_K	71_L	0.580	0.14
135_K	195_E	0.580	0.14
41_E	85_N	0.579	0.14
39_S	69_V	0.576	0.14
20_R	67_R	0.576	0.14
77_A	152_I	0.575	0.14
84_I	131_I	0.575	0.14
30_I	162_K	0.575	0.14
49_V	145_S	0.575	0.14
26_V	32_A	0.574	0.14
119_S	131_I	0.569	0.14
34_K	87_D	0.568	0.14
37_L	120_E	0.568	0.14
33_A	111_I	0.564	0.14
124_K	130_E	0.563	0.14
6_V	25_K	0.562	0.14
92_C	173_S	0.562	0.14
7_F	18_L	0.562	0.14
58_I	104_R	0.561	0.13
27_V	69_V	0.559	0.13
32_A	179_L	0.559	0.13
48_C	172_Y	0.556	0.13
120_E	194_F	0.554	0.13
118_I	131_I	0.552	0.13
8_R	106_K	0.547	0.13
58_I	138_S	0.547	0.13
57_I	61_K	0.546	0.13
136_Q	150_K	0.544	0.13
132_I	146_K	0.543	0.13
127_I	174_N	0.542	0.13
12_L	83_A	0.542	0.13
27_V	66_E	0.541	0.13
120_E	167_S	0.541	0.13
186_S	192_I	0.541	0.13
97_L	149_K	0.539	0.13
69_V	183_Q	0.538	0.13
28_L	37_L	0.534	0.13
34_K	173_S	0.534	0.13
61_K	194_F	0.532	0.13
172_Y	187_T	0.531	0.13
14_Y	30_I	0.529	0.13
136_Q	174_N	0.528	0.13
65_E	116_I	0.527	0.13
39_S	71_L	0.521	0.13
48_C	55_I	0.521	0.13
9_E	12_L	0.514	0.12
42_R	133_L	0.514	0.12
127_I	180_F	0.513	0.12
81_I	101_G	0.511	0.12
12_L	71_L	0.509	0.12
85_N	110_I	0.509	0.12
56_E	125_Y	0.505	0.12
65_E	123_E	0.502	0.12
40_L	104_R	0.501	0.12
56_E	195_E	0.501	0.12
65_E	127_I	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3fniA	1	0.385	39.3	0.957	Contact Map
3ha2A	2	0.385	37.1	0.958	Contact Map
4q0wA	1	0.6009	29.8	0.96	Contact Map
3hlyA	1	0.3662	23.7	0.962	Contact Map
4ptzC	4	0.385	23.7	0.962	Contact Map
3zhoA	4	0.3944	22.2	0.962	Contact Map
1exnA	1	0.5822	21.4	0.963	Contact Map
1ydgA	4	0.4178	20.8	0.963	Contact Map
2arkA	4	0.3944	19.8	0.963	Contact Map
4lafA	4	0.4085	18.2	0.964	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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