Q980G1 - SULSO - GREMLIN Contacts

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Q980G1 - Signal recognition particle receptor FtsY

UniProt:	Q980G1	Sequences: MRYQLLESDVSFEVTEKILEDLKENIIGKKVKRSDDLERIVKDSLKKSITEIITKNNAINVLEEIKKSPKPYIIIFFGINGVGKTTTIAKFAYMLKKNGLSCIISASDTFRAAAQEQLEVHSRNLEIPLIKGRYGGDPASVAFDAIRAAKSRGIDVVLIDTAGRMHTDTDLVNELKRVVNIAKPNLKILVLDSLGGNDALEQAKYFENNVGFDLVILTKVDADVKGGVILSLAYELNKPVGYLGIGQAYDDLIPFNAEWFIQRLFS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	266 (255)
Sequences:	6590 (3277)
Seq/√Len:	205.2

ECOLI - FTSY SRP54
BACSU - FTSY SRP54 FLHF
HALSA - Q9HMN3 SRP54
SULSO - Q980G1 SRP54

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
122_S	129_L	5.401	1.00
148_A	152_R	3.692	1.00
17_K	234_Y	3.171	1.00
105_S	145_A	2.873	1.00
76_F	88_I	2.862	1.00
103_I	154_I	2.806	1.00
95_L	156_V	2.797	1.00
204_K	208_N	2.741	1.00
173_N	176_K	2.674	1.00
119_E	131_K	2.566	1.00
101_S	154_I	2.545	1.00
176_K	209_N	2.408	1.00
46_K	262_Q	2.377	1.00
142_A	159_I	2.299	1.00
21_D	48_S	2.298	1.00
48_S	51_E	2.294	1.00
104_I	122_S	2.216	1.00
119_E	123_R	2.206	1.00
94_M	98_N	2.176	1.00
147_R	151_S	2.169	1.00
186_L	241_G	2.153	1.00
116_E	119_E	2.150	1.00
132_G	144_D	2.132	1.00
246_G	251_D	2.081	1.00
93_Y	97_K	2.041	1.00
88_I	158_L	1.995	1.00
205_Y	208_N	1.988	1.00
125_L	249_Y	1.976	1.00
188_I	216_I	1.969	1.00
207_E	238_K	1.919	1.00
204_K	235_E	1.918	1.00
256_N	259_W	1.890	1.00
87_T	216_I	1.862	1.00
107_S	142_A	1.846	1.00
96_K	126_E	1.831	1.00
105_S	157_V	1.804	1.00
169_T	173_N	1.739	1.00
166_H	198_D	1.738	1.00
94_M	242_Y	1.725	1.00
128_P	154_I	1.659	1.00
188_I	214_L	1.624	1.00
179_V	211_G	1.623	1.00
25_N	48_S	1.615	1.00
76_F	158_L	1.613	1.00
203_A	236_L	1.613	1.00
89_A	121_H	1.595	1.00
120_V	123_R	1.576	1.00
186_L	213_D	1.568	1.00
92_A	104_I	1.558	1.00
173_N	177_R	1.514	1.00
212_F	238_K	1.504	1.00
217_L	229_I	1.492	1.00
17_K	21_D	1.485	1.00
96_K	127_I	1.471	1.00
137_D	177_R	1.470	1.00
104_I	118_L	1.467	1.00
148_A	151_S	1.464	1.00
92_A	127_I	1.456	1.00
137_D	140_S	1.452	1.00
94_M	254_P	1.449	1.00
10_V	230_L	1.447	1.00
119_E	129_L	1.442	1.00
76_F	91_F	1.439	1.00
253_I	259_W	1.437	1.00
130_I	148_A	1.429	1.00
67_K	72_Y	1.413	1.00
25_N	47_K	1.397	1.00
188_I	241_G	1.373	1.00
140_S	144_D	1.373	1.00
147_R	150_K	1.362	1.00
207_E	212_F	1.362	1.00
67_K	70_K	1.343	1.00
100_L	155_D	1.341	1.00
103_I	128_P	1.341	1.00
50_T	258_E	1.322	1.00
89_A	125_L	1.320	1.00
93_Y	250_D	1.316	1.00
148_A	154_I	1.307	1.00
93_Y	249_Y	1.271	1.00
21_D	51_E	1.265	1.00
193_S	217_L	1.261	1.00
142_A	182_A	1.256	1.00
100_L	156_V	1.246	1.00
88_I	104_I	1.244	1.00
15_T	19_L	1.243	1.00
201_E	205_Y	1.241	1.00
74_I	156_V	1.237	1.00
220_V	243_L	1.232	1.00
201_E	204_K	1.230	1.00
159_I	182_A	1.228	1.00
121_H	249_Y	1.224	1.00
149_A	157_V	1.220	1.00
133_R	136_G	1.214	1.00
33_R	40_I	1.211	1.00
145_A	157_V	1.209	1.00
139_A	181_I	1.197	1.00
104_I	158_L	1.189	1.00
132_G	136_G	1.183	1.00
46_K	50_T	1.178	1.00
73_I	146_I	1.175	1.00
77_F	187_K	1.164	1.00
93_Y	96_K	1.162	1.00
179_V	187_K	1.161	1.00
245_I	253_I	1.161	1.00
128_P	148_A	1.158	1.00
43_D	47_K	1.156	1.00
130_I	144_D	1.150	1.00
103_I	148_A	1.148	1.00
50_T	261_I	1.132	1.00
214_L	241_G	1.127	1.00
87_T	244_G	1.123	1.00
6_L	15_T	1.121	1.00
49_I	230_L	1.121	1.00
176_K	180_N	1.113	1.00
143_F	147_R	1.111	1.00
73_I	159_I	1.101	1.00
242_Y	254_P	1.099	1.00
109_T	141_V	1.093	1.00
257_A	261_I	1.088	1.00
16_E	20_E	1.085	1.00
195_G	199_A	1.078	1.00
146_I	182_A	1.076	1.00
18_I	22_L	1.066	1.00
20_E	23_K	1.056	1.00
102_C	154_I	1.053	1.00
20_E	24_E	1.052	1.00
76_F	216_I	1.051	1.00
72_Y	185_N	1.049	1.00
177_R	181_I	1.043	1.00
25_N	51_E	1.037	1.00
68_S	72_Y	1.036	1.00
103_I	149_A	1.030	1.00
139_A	177_R	1.022	1.00
132_G	140_S	1.022	1.00
103_I	157_V	1.020	1.00
115_Q	131_K	1.019	1.00
75_I	159_I	1.013	1.00
116_E	134_Y	1.013	1.00
191_L	217_L	1.007	1.00
215_V	232_L	1.001	1.00
144_D	147_R	1.000	1.00
87_T	252_L	0.997	1.00
146_I	157_V	0.991	1.00
21_D	24_E	0.986	1.00
179_V	183_K	0.979	1.00
166_H	201_E	0.962	0.99
82_V	88_I	0.954	0.99
25_N	29_K	0.953	0.99
107_S	159_I	0.951	0.99
73_I	157_V	0.950	0.99
115_Q	132_G	0.949	0.99
69_P	72_Y	0.945	0.99
72_Y	186_L	0.940	0.99
4_Q	7_E	0.940	0.99
16_E	19_L	0.936	0.99
96_K	125_L	0.932	0.99
93_Y	125_L	0.931	0.99
136_G	140_S	0.931	0.99
244_G	252_L	0.926	0.99
105_S	142_A	0.923	0.99
229_I	240_V	0.919	0.99
142_A	178_V	0.913	0.99
51_E	55_K	0.899	0.99
110_F	141_V	0.894	0.99
74_I	158_L	0.893	0.99
140_S	143_F	0.888	0.99
196_G	199_A	0.887	0.99
3_Y	7_E	0.883	0.99
49_I	261_I	0.880	0.99
89_A	249_Y	0.877	0.99
17_K	20_E	0.870	0.99
104_I	129_L	0.866	0.99
106_A	115_Q	0.858	0.99
24_E	28_G	0.855	0.99
57_N	60_N	0.846	0.99
157_V	182_A	0.845	0.99
75_I	178_V	0.841	0.99
105_S	159_I	0.832	0.99
104_I	125_L	0.826	0.98
135_G	140_S	0.824	0.98
44_S	48_S	0.822	0.98
82_V	195_G	0.818	0.98
245_I	252_L	0.817	0.98
121_H	125_L	0.816	0.98
119_E	122_S	0.810	0.98
234_Y	237_N	0.807	0.98
123_R	126_E	0.804	0.98
13_E	235_E	0.802	0.98
95_L	158_L	0.799	0.98
113_A	166_H	0.796	0.98
48_S	52_I	0.793	0.98
139_A	178_V	0.793	0.98
198_D	202_Q	0.788	0.98
102_C	128_P	0.788	0.98
220_V	260_F	0.787	0.98
164_R	174_E	0.786	0.98
207_E	211_G	0.786	0.98
76_F	87_T	0.784	0.98
122_S	125_L	0.773	0.98
25_N	30_K	0.769	0.98
75_I	179_V	0.768	0.98
146_I	150_K	0.768	0.98
170_D	173_N	0.759	0.97
12_F	16_E	0.759	0.97
75_I	187_K	0.758	0.97
106_A	132_G	0.753	0.97
94_M	97_K	0.747	0.97
10_V	18_I	0.744	0.97
143_F	181_I	0.743	0.97
189_L	215_V	0.742	0.97
28_G	31_V	0.741	0.97
73_I	185_N	0.735	0.97
193_S	220_V	0.734	0.97
93_Y	252_L	0.726	0.97
233_A	237_N	0.723	0.96
42_K	46_K	0.721	0.96
166_H	202_Q	0.721	0.96
14_V	234_Y	0.720	0.96
107_S	178_V	0.715	0.96
22_L	48_S	0.715	0.96
57_N	256_N	0.715	0.96
158_L	252_L	0.713	0.96
115_Q	134_Y	0.712	0.96
128_P	152_R	0.711	0.96
173_N	180_N	0.711	0.96
191_L	232_L	0.710	0.96
26_I	34_S	0.702	0.96
54_T	257_A	0.702	0.96
40_I	43_D	0.695	0.96
200_L	231_S	0.690	0.95
187_K	210_V	0.687	0.95
57_N	254_P	0.686	0.95
205_Y	209_N	0.686	0.95
207_E	210_V	0.682	0.95
144_D	148_A	0.679	0.95
101_S	153_G	0.679	0.95
177_R	180_N	0.676	0.95
198_D	201_E	0.676	0.95
5_L	15_T	0.675	0.95
101_S	155_D	0.675	0.95
74_I	242_Y	0.673	0.95
121_H	124_N	0.672	0.95
187_K	213_D	0.672	0.95
76_F	188_I	0.670	0.95
176_K	210_V	0.667	0.94
105_S	130_I	0.662	0.94
71_P	157_V	0.658	0.94
3_Y	6_L	0.655	0.94
113_A	162_A	0.654	0.94
25_N	44_S	0.654	0.94
216_I	242_Y	0.653	0.94
57_N	61_V	0.651	0.94
102_C	155_D	0.651	0.94
122_S	128_P	0.650	0.94
97_K	250_D	0.650	0.94
54_T	57_N	0.650	0.94
150_K	153_G	0.650	0.94
13_E	16_E	0.647	0.94
199_A	223_D	0.647	0.94
186_L	214_L	0.646	0.94
200_L	235_E	0.646	0.94
132_G	141_V	0.645	0.93
228_V	231_S	0.644	0.93
255_F	260_F	0.643	0.93
101_S	128_P	0.642	0.93
136_G	144_D	0.640	0.93
56_N	59_I	0.640	0.93
86_T	244_G	0.640	0.93
146_I	181_I	0.639	0.93
15_T	18_I	0.638	0.93
71_P	149_A	0.637	0.93
107_S	141_V	0.635	0.93
82_V	193_S	0.635	0.93
106_A	131_K	0.634	0.93
187_K	211_G	0.632	0.93
169_T	209_N	0.631	0.93
178_V	182_A	0.630	0.93
139_A	180_N	0.625	0.92
50_T	53_I	0.625	0.92
29_K	40_I	0.624	0.92
77_F	210_V	0.623	0.92
258_E	262_Q	0.617	0.92
26_I	44_S	0.617	0.92
200_L	236_L	0.616	0.92
194_L	223_D	0.616	0.92
211_G	238_K	0.614	0.92
46_K	113_A	0.613	0.92
47_K	50_T	0.612	0.92
166_H	205_Y	0.610	0.91
21_D	234_Y	0.609	0.91
171_L	175_L	0.608	0.91
103_I	152_R	0.606	0.91
49_I	265_F	0.604	0.91
104_I	127_I	0.600	0.91
142_A	181_I	0.598	0.91
79_I	167_T	0.597	0.91
142_A	146_I	0.595	0.90
132_G	148_A	0.593	0.90
79_I	82_V	0.592	0.90
70_K	150_K	0.592	0.90
191_L	199_A	0.592	0.90
19_L	23_K	0.592	0.90
124_N	251_D	0.591	0.90
179_V	210_V	0.589	0.90
222_A	247_Q	0.588	0.90
120_V	124_N	0.587	0.90
116_E	133_R	0.587	0.90
5_L	10_V	0.584	0.90
54_T	258_E	0.583	0.90
9_D	224_V	0.583	0.90
109_T	138_P	0.581	0.89
218_T	222_A	0.581	0.89
11_S	231_S	0.581	0.89
95_L	98_N	0.580	0.89
12_F	15_T	0.575	0.89
71_P	155_D	0.571	0.89
47_K	51_E	0.571	0.89
29_K	44_S	0.568	0.88
196_G	225_K	0.565	0.88
115_Q	133_R	0.565	0.88
59_I	98_N	0.563	0.88
32_K	35_D	0.563	0.88
196_G	223_D	0.561	0.88
18_I	48_S	0.556	0.87
13_E	17_K	0.555	0.87
13_E	234_Y	0.553	0.87
92_A	125_L	0.552	0.87
25_N	28_G	0.551	0.87
176_K	208_N	0.547	0.86
154_I	157_V	0.546	0.86
70_K	153_G	0.546	0.86
45_L	53_I	0.546	0.86
125_L	128_P	0.545	0.86
166_H	172_V	0.542	0.86
112_A	121_H	0.539	0.86
61_V	67_K	0.539	0.86
199_A	228_V	0.538	0.85
14_V	18_I	0.538	0.85
122_S	131_K	0.538	0.85
143_F	150_K	0.538	0.85
225_K	264_L	0.537	0.85
80_N	247_Q	0.535	0.85
55_K	58_A	0.534	0.85
110_F	138_P	0.534	0.85
124_N	249_Y	0.532	0.85
108_D	117_Q	0.532	0.85
50_T	257_A	0.529	0.84
35_D	40_I	0.529	0.84
23_K	27_I	0.528	0.84
20_E	69_P	0.527	0.84
14_V	17_K	0.526	0.84
220_V	245_I	0.526	0.84
67_K	71_P	0.526	0.84
200_L	228_V	0.525	0.84
22_L	25_N	0.523	0.84
55_K	237_N	0.523	0.84
165_M	222_A	0.520	0.83
167_T	173_N	0.520	0.83
138_P	178_V	0.519	0.83
187_K	212_F	0.519	0.83
87_T	245_I	0.518	0.83
115_Q	119_E	0.518	0.83
50_T	54_T	0.517	0.83
96_K	101_S	0.514	0.83
124_N	248_A	0.514	0.83
132_G	151_S	0.514	0.83
215_V	238_K	0.513	0.83
119_E	133_R	0.512	0.83
233_A	241_G	0.511	0.82
116_E	123_R	0.511	0.82
82_V	247_Q	0.511	0.82
243_L	255_F	0.508	0.82
88_I	107_S	0.507	0.82
142_A	179_V	0.507	0.82
131_K	134_Y	0.506	0.82
199_A	203_A	0.505	0.82
142_A	157_V	0.504	0.82
80_N	110_F	0.504	0.82
55_K	257_A	0.504	0.82
172_V	198_D	0.502	0.81
2_R	19_L	0.502	0.81
115_Q	141_V	0.500	0.81

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2og2A	1	0.9662	100	0.365	Contact Map
1vmaA	1	0.9361	100	0.37	Contact Map
2yhsA	1	0.9699	100	0.378	Contact Map
4c7oA	1	0.985	100	0.383	Contact Map
2v3cC	1	0.9774	100	0.389	Contact Map
2px0A	4	0.9398	100	0.39	Contact Map
3b9qA	1	0.9624	100	0.4	Contact Map
2j37W	1	0.9774	100	0.402	Contact Map
2xxaA	1	0.985	100	0.407	Contact Map
1ls1A	1	0.9549	100	0.41	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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