GREMLIN Database
Q980F7 - 30S ribosomal protein S19e
UniProt: Q980F7 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 158 (140)
Sequences: 459 (303)
Seq/√Len: 25.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
80_R101_G5.8811.00
63_S83_Y5.5821.00
61_A107_I4.9451.00
13_P17_I3.9991.00
57_W110_Q3.3531.00
45_F85_G2.6170.99
65_L116_L2.5800.99
118_Q126_S2.5590.99
99_A104_N2.5190.99
80_R98_K2.4390.99
52_N59_I2.3090.98
102_H106_L2.3080.98
68_L127_L2.2600.98
9_E70_V2.0120.95
88_R94_E1.9890.95
89_R95_K1.9740.95
106_L109_Q1.9010.94
20_L116_L1.8450.93
16_L20_L1.8350.93
67_K71_N1.7860.91
43_A46_K1.7510.91
86_R94_E1.6360.87
68_L79_T1.6130.87
14_D17_I1.5910.86
25_K55_D1.5730.85
87_K97_V1.5030.82
20_L134_L1.4950.82
117_V127_L1.4670.81
108_F117_V1.4300.79
36_W40_A1.3710.76
19_R141_E1.3430.74
12_P15_L1.3380.74
79_T82_I1.3310.74
68_L117_V1.3130.73
74_I79_T1.2980.72
56_W69_Y1.2820.71
7_T10_M1.2690.70
64_L104_N1.2520.69
57_W106_L1.2460.69
6_I140_L1.2250.67
84_G96_F1.2160.67
134_L138_L1.2100.66
100_P103_V1.1970.66
112_E119_K1.1960.65
105_R125_R1.1750.64
6_I143_F1.1630.63
21_A59_I1.1590.63
8_A16_L1.1560.63
126_S132_R1.0980.59
40_A103_V1.0870.58
118_Q128_S1.0820.58
67_K82_I1.0810.57
6_I128_S1.0810.57
8_A25_K1.0760.57
109_Q112_E1.0640.56
133_S137_K1.0600.56
83_Y117_V1.0560.56
7_T70_V1.0370.54
33_P106_L1.0300.54
67_K81_T1.0200.53
43_A55_D0.9960.51
33_P110_Q0.9940.51
136_D139_A0.9910.51
11_V141_E0.9880.51
20_L65_L0.9630.49
115_G145_E0.9590.49
27_N116_L0.9520.48
64_L79_T0.9500.48
21_A75_G0.9490.48
115_G130_K0.9430.47
128_S146_L0.9420.47
98_K101_G0.9260.46
42_T50_P0.9210.46
69_Y136_D0.9150.45
89_R92_R0.9110.45
85_G111_L0.9060.45
23_Y27_N0.9050.45
68_L74_I0.9010.44
43_A84_G0.8950.44
66_R125_R0.8940.44
135_L138_L0.8810.43
16_L51_D0.8780.43
72_S99_A0.8780.43
45_F97_V0.8730.42
21_A136_D0.8680.42
132_R136_D0.8530.41
19_R22_I0.8450.40
25_K52_N0.8420.40
61_A114_A0.8360.40
63_S68_L0.8320.39
18_K52_N0.8280.39
70_V114_A0.8210.39
56_W90_G0.8190.39
71_N81_T0.8150.38
51_D71_N0.8060.38
124_G131_G0.8050.38
31_V113_K0.8020.37
27_N114_A0.7990.37
115_G137_K0.7910.37
38_L46_K0.7890.36
120_I123_K0.7810.36
110_Q115_G0.7720.35
74_I81_T0.7640.35
31_V79_T0.7640.35
44_S87_K0.7620.35
42_T46_K0.7510.34
12_P120_I0.7490.34
101_G122_N0.7480.34
101_G107_I0.7470.34
32_D35_E0.7340.33
45_F72_S0.7260.32
88_R91_T0.7250.32
37_A114_A0.7220.32
17_I24_L0.7200.32
58_Y106_L0.7180.32
33_P102_H0.7080.31
132_R142_I0.7040.31
20_L107_I0.7030.31
79_T104_N0.7010.31
7_T142_I0.6970.30
23_Y28_V0.6970.30
56_W89_R0.6910.30
85_G96_F0.6880.30
31_V130_K0.6870.30
9_E35_E0.6860.30
141_E146_L0.6810.29
129_P133_S0.6800.29
134_L137_K0.6790.29
109_Q139_A0.6790.29
18_K91_T0.6730.29
27_N32_D0.6730.29
112_E125_R0.6630.28
76_I108_F0.6600.28
67_K83_Y0.6570.28
27_N134_L0.6560.28
67_K74_I0.6560.28
31_V110_Q0.6500.28
63_S140_L0.6430.27
33_P57_W0.6430.27
59_I116_L0.6380.27
40_A50_P0.6340.27
68_L90_G0.6310.26
25_K58_Y0.6210.26
6_I71_N0.6200.26
40_A94_E0.6190.26
37_A142_I0.6160.26
31_V37_A0.6150.26
23_Y138_L0.6060.25
130_K135_L0.6050.25
72_S127_L0.6040.25
15_L48_R0.6010.25
133_S138_L0.6000.25
99_A147_A0.5950.24
74_I110_Q0.5930.24
35_E129_P0.5890.24
54_E59_I0.5870.24
105_R139_A0.5860.24
40_A69_Y0.5860.24
48_R137_K0.5840.24
64_L107_I0.5840.24
7_T132_R0.5810.24
110_Q114_A0.5800.24
64_L120_I0.5760.23
15_L65_L0.5750.23
44_S97_V0.5740.23
27_N70_V0.5730.23
118_Q129_P0.5730.23
64_L78_K0.5730.23
68_L113_K0.5700.23
105_R112_E0.5700.23
10_M139_A0.5660.23
71_N116_L0.5640.23
99_A102_H0.5630.23
9_E72_S0.5630.23
77_E98_K0.5590.23
80_R99_A0.5570.22
37_A110_Q0.5560.22
11_V24_L0.5560.22
54_E63_S0.5540.22
33_P38_L0.5540.22
46_K65_L0.5540.22
6_I9_E0.5520.22
85_G136_D0.5500.22
7_T72_S0.5500.22
115_G144_K0.5500.22
41_K66_R0.5490.22
18_K54_E0.5420.22
33_P37_A0.5400.22
35_E130_K0.5370.21
101_G112_E0.5350.21
115_G138_L0.5330.21
47_E68_L0.5300.21
10_M136_D0.5290.21
69_Y125_R0.5280.21
38_L48_R0.5270.21
39_L57_W0.5260.21
87_K126_S0.5240.21
7_T42_T0.5170.21
20_L123_K0.5150.20
16_L122_N0.5150.20
32_D115_G0.5140.20
26_E32_D0.5140.20
104_N129_P0.5130.20
48_R94_E0.5100.20
18_K113_K0.5100.20
34_P105_R0.5050.20
128_S147_A0.5050.20
8_A134_L0.5020.20
27_N95_K0.5010.20
36_W45_F0.5000.20
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3j38T 1 0.9747 100 0.092 Contact Map
4w23T 1 0.8924 100 0.094 Contact Map
4bpeT 1 0.9304 100 0.094 Contact Map
3j7aY 1 0.9241 100 0.096 Contact Map
3zeyO 1 0.943 100 0.105 Contact Map
3j60T 1 0.9177 100 0.106 Contact Map
4ujpU 1 0.8987 100 0.112 Contact Map
2v7fA 1 0.8797 100 0.409 Contact Map
2o0mA 1 0.1013 95.5 0.903 Contact Map
1bjaA 1 0.5949 94.4 0.909 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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