Q980D9 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q980D9 - XerC/D integrase-recombinase protein (XerC/D)

UniProt:	Q980D9	Sequences: MKLDLGSPPESGDLYNAFINALIIAGAGNGTIKLYSTAVRDFLDFINKDPRKVTSEDLNRWISSLLNREGKVKGDEVEKKRAKSVTIRYYIIAVRRFLKWINVSVRPPIPKVRRKEVKALDEIQIQKVLNACKRTKDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEERIVFFTDETKLLLRKYIKGKKAEDKLFDLKYDTLYRKLKRLGKKVGIDLRPHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKAMSSSSSKTPP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	291 (261)
Sequences:	37355 (30052)
Seq/√Len:	1860.2

ECOLI - XERC INTQ INTF INTR XERD INTZ INTB INTA INTD INTS INTE FIME FIMB
BACSU - YOPP INT XERC XERD YOMM YOEC
HALSA - Q9HR66 Q9HQV5 O54590 Q9HSI7 O52010
SULSO - Q980D9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
238_A	255_L	5.027	1.00
54_T	57_D	3.263	1.00
159_V	196_I	3.256	1.00
180_R	256_G	3.148	1.00
229_R	232_I	2.827	1.00
148_G	237_F	2.782	1.00
144_L	230_P	2.742	1.00
151_A	231_H	2.712	1.00
237_F	254_L	2.573	1.00
65_L	80_K	2.500	1.00
158_L	207_D	2.241	1.00
170_R	181_I	2.175	1.00
235_H	268_H	2.142	1.00
158_L	204_K	2.129	1.00
144_L	154_L	2.125	1.00
257_H	263_T	2.120	1.00
167_N	189_K	2.109	1.00
38_A	79_K	2.024	1.00
139_L	195_Y	2.013	1.00
121_D	124_Q	1.978	1.00
168_M	181_I	1.963	1.00
247_N	250_T	1.927	1.00
146_D	185_T	1.907	1.00
158_L	203_D	1.882	1.00
242_L	251_L	1.881	1.00
62_I	81_R	1.841	1.00
163_D	166_N	1.832	1.00
189_K	193_R	1.828	1.00
41_D	80_K	1.785	1.00
249_I	252_Q	1.783	1.00
38_A	83_K	1.760	1.00
255_L	263_T	1.727	1.00
36_S	40_R	1.718	1.00
153_E	180_R	1.679	1.00
15_Y	39_V	1.665	1.00
58_L	104_S	1.657	1.00
178_E	258_K	1.648	1.00
183_F	254_L	1.641	1.00
19_I	36_S	1.607	1.00
241_S	246_I	1.597	1.00
261_K	264_Q	1.578	1.00
137_D	216_K	1.574	1.00
149_L	154_L	1.547	1.00
237_F	241_S	1.543	1.00
122_E	240_L	1.535	1.00
243_K	273_D	1.525	1.00
138_K	142_R	1.501	1.00
163_D	168_M	1.501	1.00
15_Y	87_I	1.480	1.00
49_D	52_K	1.479	1.00
184_F	189_K	1.478	1.00
90_Y	96_R	1.469	1.00
145_L	240_L	1.469	1.00
31_T	35_Y	1.436	1.00
164_L	193_R	1.436	1.00
158_L	161_D	1.434	1.00
75_D	79_K	1.431	1.00
242_L	267_T	1.428	1.00
87_I	91_I	1.424	1.00
53_V	88_R	1.420	1.00
142_R	191_L	1.395	1.00
151_A	155_L	1.394	1.00
45_F	64_S	1.388	1.00
262_T	265_I	1.382	1.00
120_L	236_T	1.381	1.00
48_K	57_D	1.381	1.00
239_T	268_H	1.379	1.00
241_S	251_L	1.379	1.00
161_D	172_R	1.363	1.00
252_Q	260_I	1.341	1.00
139_L	194_K	1.333	1.00
14_L	91_I	1.333	1.00
140_I	213_L	1.323	1.00
249_I	253_K	1.320	1.00
159_V	205_L	1.317	1.00
133_K	138_K	1.313	1.00
125_I	145_L	1.312	1.00
151_A	210_Y	1.310	1.00
210_Y	214_Y	1.307	1.00
146_D	188_T	1.296	1.00
29_N	33_K	1.295	1.00
30_G	33_K	1.292	1.00
149_L	171_V	1.289	1.00
124_Q	127_K	1.288	1.00
132_C	220_L	1.278	1.00
152_N	156_S	1.261	1.00
61_W	65_L	1.247	1.00
172_R	179_E	1.245	1.00
120_L	228_L	1.239	1.00
139_L	191_L	1.235	1.00
23_I	32_I	1.232	1.00
129_L	142_R	1.229	1.00
140_I	154_L	1.216	1.00
66_L	77_V	1.215	1.00
61_W	80_K	1.213	1.00
252_Q	263_T	1.207	1.00
209_K	212_T	1.205	1.00
236_T	240_L	1.205	1.00
125_I	240_L	1.202	1.00
42_F	45_F	1.191	1.00
89_Y	105_V	1.190	1.00
19_I	32_I	1.181	1.00
62_I	66_L	1.178	1.00
126_Q	130_N	1.155	1.00
167_N	186_D	1.154	1.00
17_A	21_A	1.148	1.00
211_D	214_Y	1.148	1.00
145_L	233_L	1.147	1.00
18_F	86_T	1.144	1.00
81_R	85_V	1.141	1.00
243_K	270_V	1.139	1.00
160_K	203_D	1.129	1.00
33_K	37_T	1.123	1.00
76_E	80_K	1.119	1.00
73_K	76_E	1.117	1.00
157_V	169_I	1.116	1.00
150_R	231_H	1.110	1.00
119_A	236_T	1.107	1.00
14_L	90_Y	1.106	1.00
122_E	244_R	1.104	1.00
238_A	251_L	1.102	1.00
151_A	214_Y	1.102	1.00
259_D	264_Q	1.098	1.00
160_K	202_E	1.096	1.00
78_E	110_P	1.092	1.00
204_K	207_D	1.078	1.00
217_L	221_G	1.076	1.00
216_K	219_R	1.074	1.00
32_I	36_S	1.070	1.00
170_R	179_E	1.067	1.00
212_T	215_R	1.066	1.00
59_N	63_S	1.062	1.00
145_L	236_T	1.059	1.00
221_G	228_L	1.055	1.00
127_K	131_A	1.047	1.00
237_F	255_L	1.046	1.00
185_T	188_T	1.044	1.00
38_A	80_K	1.042	1.00
120_L	128_V	1.038	1.00
159_V	199_K	1.029	1.00
34_L	37_T	1.027	1.00
72_V	80_K	1.026	1.00
238_A	267_T	1.026	1.00
131_A	224_V	1.025	1.00
140_I	206_F	1.020	1.00
35_Y	83_K	1.012	1.00
34_L	38_A	1.012	1.00
14_L	50_P	1.006	1.00
186_D	190_L	0.999	1.00
131_A	223_K	0.998	1.00
146_D	187_E	0.998	1.00
195_Y	199_K	0.996	1.00
239_T	267_T	0.989	1.00
97_F	101_I	0.984	1.00
275_R	279_L	0.984	1.00
214_Y	218_K	0.981	1.00
143_L	169_I	0.979	1.00
259_D	262_T	0.975	1.00
142_R	187_E	0.972	1.00
122_E	126_Q	0.971	1.00
120_L	124_Q	0.963	1.00
273_D	276_N	0.959	1.00
138_K	191_L	0.948	1.00
88_R	99_K	0.946	1.00
240_L	243_K	0.943	1.00
27_A	32_I	0.937	1.00
45_F	60_R	0.937	1.00
45_F	61_W	0.930	1.00
66_L	74_G	0.928	1.00
30_G	34_L	0.925	1.00
28_G	31_T	0.916	1.00
55_S	59_N	0.909	1.00
250_T	277_E	0.901	1.00
219_R	223_K	0.894	1.00
132_C	141_I	0.891	1.00
187_E	190_L	0.884	1.00
16_N	20_N	0.880	1.00
164_L	189_K	0.869	1.00
95_R	108_P	0.866	1.00
94_V	99_K	0.861	1.00
119_A	268_H	0.859	1.00
220_L	223_K	0.858	1.00
122_E	243_K	0.857	1.00
22_L	27_A	0.857	1.00
37_T	41_D	0.852	1.00
65_L	72_V	0.850	1.00
246_I	250_T	0.850	1.00
72_V	77_V	0.848	1.00
253_K	274_L	0.846	1.00
85_V	89_Y	0.843	1.00
79_K	82_A	0.842	1.00
143_L	188_T	0.839	1.00
27_A	35_Y	0.837	1.00
238_A	242_L	0.837	1.00
29_N	32_I	0.829	1.00
88_R	103_V	0.828	1.00
72_V	76_E	0.828	1.00
89_Y	102_N	0.828	1.00
235_H	265_I	0.825	1.00
252_Q	264_Q	0.821	1.00
248_V	264_Q	0.819	1.00
34_L	79_K	0.815	1.00
57_D	60_R	0.811	1.00
218_K	222_K	0.810	1.00
55_S	95_R	0.808	1.00
151_A	213_L	0.805	1.00
184_F	188_T	0.803	1.00
88_R	104_S	0.802	1.00
42_F	88_R	0.799	1.00
148_G	255_L	0.798	1.00
118_K	232_I	0.797	1.00
155_L	210_Y	0.794	1.00
163_D	167_N	0.793	1.00
17_A	98_L	0.793	1.00
172_R	177_G	0.793	1.00
65_L	77_V	0.791	1.00
214_Y	230_P	0.791	1.00
147_T	182_V	0.781	1.00
157_V	162_I	0.778	1.00
238_A	263_T	0.778	1.00
16_N	36_S	0.778	1.00
23_I	36_S	0.777	1.00
188_T	191_L	0.772	1.00
272_D	276_N	0.767	1.00
155_L	213_L	0.763	1.00
151_A	230_P	0.760	1.00
91_I	98_L	0.759	1.00
60_R	64_S	0.757	1.00
143_L	206_F	0.756	1.00
159_V	200_K	0.755	1.00
59_N	96_R	0.754	1.00
212_T	216_K	0.753	1.00
248_V	260_I	0.750	1.00
194_K	198_G	0.749	1.00
91_I	99_K	0.747	1.00
163_D	170_R	0.745	1.00
97_F	106_R	0.736	1.00
75_D	78_E	0.731	1.00
243_K	272_D	0.731	1.00
143_L	154_L	0.730	1.00
139_L	206_F	0.729	1.00
18_F	22_L	0.725	1.00
217_L	230_P	0.720	1.00
157_V	205_L	0.719	1.00
137_D	220_L	0.716	1.00
150_R	173_N	0.714	1.00
215_R	219_R	0.711	1.00
196_I	200_K	0.710	1.00
81_R	104_S	0.709	1.00
193_R	196_I	0.708	1.00
131_A	220_L	0.702	1.00
216_K	220_L	0.702	1.00
228_L	232_I	0.700	1.00
15_Y	19_I	0.697	1.00
144_L	151_A	0.696	1.00
128_V	141_I	0.694	1.00
22_L	25_A	0.693	1.00
193_R	197_K	0.692	1.00
87_I	90_Y	0.691	1.00
14_L	87_I	0.691	1.00
120_L	232_I	0.691	1.00
63_S	66_L	0.690	1.00
20_N	23_I	0.690	1.00
254_L	274_L	0.689	1.00
95_R	106_R	0.689	1.00
136_K	195_Y	0.688	1.00
242_L	270_V	0.687	1.00
128_V	221_G	0.684	1.00
218_K	221_G	0.681	1.00
22_L	86_T	0.678	1.00
196_I	199_K	0.677	1.00
149_L	169_I	0.677	1.00
102_N	105_V	0.676	1.00
132_C	138_K	0.675	1.00
53_V	58_L	0.674	1.00
56_E	96_R	0.674	1.00
238_A	257_H	0.674	1.00
17_A	96_R	0.668	1.00
14_L	96_R	0.666	1.00
37_T	40_R	0.665	1.00
56_E	60_R	0.664	1.00
58_L	84_S	0.663	1.00
59_N	62_I	0.662	1.00
260_I	264_Q	0.662	1.00
231_H	235_H	0.661	1.00
42_F	61_W	0.661	1.00
143_L	149_L	0.658	1.00
40_R	44_D	0.658	1.00
142_R	188_T	0.657	1.00
61_W	64_S	0.657	1.00
276_N	279_L	0.656	1.00
250_T	254_L	0.653	1.00
127_K	130_N	0.652	1.00
19_I	23_I	0.652	1.00
246_I	277_E	0.648	1.00
141_I	233_L	0.647	1.00
211_D	218_K	0.644	1.00
190_L	194_K	0.644	1.00
139_L	143_L	0.644	1.00
78_E	82_A	0.643	1.00
42_F	84_S	0.642	1.00
63_S	67_N	0.639	1.00
129_L	138_K	0.635	1.00
123_I	127_K	0.631	1.00
41_D	61_W	0.630	1.00
133_K	142_R	0.629	1.00
191_L	194_K	0.629	1.00
242_L	249_I	0.629	1.00
271_L	274_L	0.627	1.00
17_A	20_N	0.624	1.00
85_V	104_S	0.624	1.00
62_I	77_V	0.623	1.00
260_I	263_T	0.621	1.00
186_D	279_L	0.618	1.00
246_I	251_L	0.614	1.00
119_A	239_T	0.609	1.00
232_I	235_H	0.608	1.00
78_E	112_V	0.608	1.00
213_L	230_P	0.608	1.00
39_V	83_K	0.608	1.00
190_L	193_R	0.607	1.00
249_I	264_Q	0.605	1.00
55_S	97_F	0.605	1.00
242_L	247_N	0.604	1.00
147_T	185_T	0.603	1.00
139_L	188_T	0.602	1.00
104_S	107_P	0.601	1.00
134_R	138_K	0.598	1.00
125_I	129_L	0.598	1.00
84_S	104_S	0.597	1.00
131_A	134_R	0.596	1.00
94_V	106_R	0.592	1.00
13_D	17_A	0.590	1.00
74_G	78_E	0.589	1.00
208_L	212_T	0.583	1.00
42_F	46_I	0.583	1.00
149_L	153_E	0.581	1.00
22_L	35_Y	0.580	1.00
136_K	139_L	0.580	1.00
272_D	275_R	0.576	1.00
94_V	102_N	0.574	1.00
88_R	102_N	0.574	1.00
251_L	267_T	0.568	1.00
125_I	236_T	0.568	1.00
270_V	273_D	0.566	1.00
156_S	207_D	0.566	1.00
17_A	90_Y	0.565	1.00
122_E	236_T	0.564	1.00
153_E	171_V	0.564	1.00
22_L	26_G	0.564	1.00
242_L	248_V	0.563	1.00
258_K	262_T	0.563	1.00
259_D	263_T	0.561	1.00
45_F	48_K	0.559	1.00
142_R	146_D	0.556	1.00
217_L	233_L	0.554	1.00
149_L	157_V	0.553	1.00
61_W	84_S	0.552	1.00
139_L	192_L	0.552	1.00
120_L	125_I	0.551	1.00
117_V	229_R	0.551	1.00
195_Y	198_G	0.548	1.00
123_I	126_Q	0.547	1.00
252_Q	262_T	0.543	1.00
164_L	184_F	0.540	1.00
39_V	44_D	0.539	1.00
159_V	192_L	0.539	1.00
248_V	263_T	0.538	1.00
135_T	138_K	0.536	1.00
39_V	87_I	0.536	1.00
136_K	216_K	0.533	1.00
39_V	43_L	0.529	1.00
55_S	106_R	0.529	1.00
162_I	192_L	0.527	1.00
85_V	109_I	0.523	1.00
242_L	269_L	0.523	1.00
86_T	89_Y	0.521	1.00
81_R	107_P	0.520	1.00
144_L	233_L	0.520	1.00
252_Q	255_L	0.520	1.00
171_V	174_T	0.516	1.00
143_L	192_L	0.515	1.00
153_E	256_G	0.512	1.00
23_I	29_N	0.511	1.00
183_F	275_R	0.511	1.00
161_D	173_N	0.510	1.00
85_V	105_V	0.510	1.00
220_L	224_V	0.510	1.00
21_A	90_Y	0.509	1.00
164_L	167_N	0.508	1.00
75_D	112_V	0.508	1.00
158_L	202_E	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1a0pA	1	0.8454	100	0.216	Contact Map
2a3vA	3	0.921	100	0.231	Contact Map
1z1bA	3	0.9313	100	0.24	Contact Map
1z19A	3	0.9038	100	0.248	Contact Map
4a8eA	2	0.8797	100	0.251	Contact Map
1xo0A	3	0.921	100	0.269	Contact Map
3nkhA	2	0.5979	100	0.426	Contact Map
1ae9A	4	0.5223	100	0.495	Contact Map
1aihA	2	0.5601	100	0.507	Contact Map
4e0gA	2	0.8763	99.9	0.578	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.01 seconds.