Q980D7 - SULSO - GREMLIN Contacts

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Q980D7 - Uncharacterized protein

UniProt:	Q980D7	Sequences: MTVWYTGTGDKGKTKLPSVGEIWKDDDIVNAIGDLDELNASLGVISSLYPQLREIMVRIQSDIFSLSSEIAGFDMNFEEEKVKWIEEEISSFSKGIPELRNFILPGGHVAASFLHLARTICRRSERSVVKILKRSKAKDVHVKYLNRLSSLLFVLALYVNKQEKVQEIIWKR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	172 (167)
Sequences:	2414 (1524)
Seq/√Len:	117.9

BACSU - PDUO
HALSA - Q9HPN7
SULSO - Q980D7 Q7LXT1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
38_L	121_C	4.009	1.00
128_V	145_L	3.664	1.00
25_D	133_K	3.019	1.00
30_N	127_S	2.783	1.00
15_K	21_E	2.687	1.00
5_Y	90_S	2.680	1.00
41_S	116_L	2.588	1.00
46_S	53_R	2.411	1.00
79_E	83_K	2.402	1.00
42_L	56_M	2.388	1.00
25_D	130_K	2.379	1.00
45_I	114_L	2.377	1.00
48_L	109_V	2.319	1.00
41_S	120_I	2.289	1.00
17_P	71_A	2.091	1.00
55_I	88_E	2.056	1.00
29_V	32_I	2.045	1.00
62_D	144_Y	2.016	1.00
55_I	151_L	1.965	1.00
42_L	152_L	1.907	1.00
158_Y	162_Q	1.884	1.00
34_D	127_S	1.880	1.00
23_W	133_K	1.875	1.00
62_D	81_K	1.798	1.00
79_E	140_V	1.795	1.00
8_T	15_K	1.784	1.00
151_L	155_L	1.770	1.00
109_V	113_F	1.743	1.00
120_I	123_R	1.709	1.00
55_I	92_F	1.662	1.00
111_A	160_N	1.653	1.00
30_N	34_D	1.648	1.00
84_W	88_E	1.641	1.00
95_G	162_Q	1.640	1.00
25_D	129_V	1.638	1.00
64_F	67_S	1.556	1.00
88_E	91_S	1.546	1.00
69_E	138_K	1.541	1.00
4_W	154_V	1.518	1.00
92_F	151_L	1.499	1.00
117_A	152_L	1.477	1.00
114_L	159_V	1.470	1.00
127_S	130_K	1.467	1.00
41_S	117_A	1.448	1.00
26_D	135_S	1.412	1.00
83_K	87_E	1.388	1.00
37_E	123_R	1.378	1.00
70_I	128_V	1.368	1.00
82_V	140_V	1.346	1.00
5_Y	86_E	1.329	1.00
14_T	29_V	1.314	1.00
52_L	159_V	1.309	1.00
40_A	119_T	1.276	0.99
39_N	64_F	1.268	0.99
52_L	155_L	1.265	0.99
160_N	167_E	1.259	0.99
93_S	154_V	1.259	0.99
48_L	113_F	1.252	0.99
44_V	116_L	1.212	0.99
22_I	26_D	1.207	0.99
131_I	135_S	1.199	0.99
58_R	84_W	1.184	0.99
44_V	113_F	1.166	0.99
13_K	23_W	1.164	0.99
77_F	81_K	1.156	0.99
96_I	154_V	1.138	0.99
47_S	109_V	1.137	0.99
92_F	158_Y	1.133	0.99
41_S	113_F	1.130	0.99
108_H	160_N	1.130	0.99
113_F	116_L	1.111	0.99
79_E	143_K	1.104	0.99
32_I	70_I	1.102	0.99
51_Q	91_S	1.083	0.98
5_Y	89_I	1.067	0.98
110_A	159_V	1.058	0.98
45_I	117_A	1.051	0.98
23_W	26_D	1.035	0.98
47_S	112_S	1.035	0.98
132_L	142_V	1.028	0.98
45_I	159_V	1.028	0.98
88_E	151_L	1.017	0.97
62_D	84_W	1.016	0.97
69_E	76_N	1.003	0.97
89_I	154_V	1.001	0.97
51_Q	162_Q	1.000	0.97
17_P	72_G	0.997	0.97
31_A	128_V	0.993	0.97
8_T	21_E	0.980	0.97
8_T	13_K	0.960	0.96
41_S	45_I	0.935	0.96
46_S	57_V	0.934	0.96
34_D	123_R	0.932	0.96
140_V	143_K	0.930	0.96
47_S	113_F	0.927	0.96
101_N	169_I	0.920	0.95
97_P	161_K	0.916	0.95
39_N	67_S	0.915	0.95
59_I	144_Y	0.913	0.95
30_N	130_K	0.900	0.95
50_P	54_E	0.885	0.94
66_L	141_H	0.883	0.94
53_R	57_V	0.877	0.94
28_I	135_S	0.863	0.94
102_F	153_F	0.863	0.94
36_D	118_R	0.851	0.93
16_L	22_I	0.846	0.93
39_N	60_Q	0.842	0.93
35_L	63_I	0.841	0.93
130_K	134_R	0.838	0.93
43_G	60_Q	0.836	0.93
111_A	167_E	0.834	0.92
100_R	169_I	0.829	0.92
15_K	19_V	0.826	0.92
61_S	65_S	0.821	0.92
128_V	141_H	0.821	0.92
55_I	91_S	0.820	0.92
34_D	124_S	0.816	0.92
161_K	166_Q	0.810	0.91
92_F	155_L	0.802	0.91
82_V	143_K	0.802	0.91
91_S	95_G	0.798	0.91
27_D	127_S	0.795	0.91
57_V	168_I	0.790	0.90
124_S	145_L	0.788	0.90
56_M	114_L	0.787	0.90
86_E	90_S	0.782	0.90
26_D	134_R	0.781	0.90
78_E	81_K	0.779	0.90
121_C	152_L	0.766	0.89
58_R	62_D	0.764	0.89
14_T	22_I	0.762	0.89
107_G	160_N	0.759	0.88
44_V	109_V	0.758	0.88
3_V	7_G	0.758	0.88
38_L	117_A	0.755	0.88
80_E	83_K	0.748	0.88
28_I	32_I	0.748	0.88
132_L	137_A	0.740	0.87
32_I	119_T	0.740	0.87
86_E	89_I	0.728	0.86
88_E	92_F	0.725	0.86
35_L	66_L	0.723	0.86
8_T	11_K	0.720	0.86
45_I	113_F	0.717	0.85
55_I	84_W	0.713	0.85
34_D	120_I	0.705	0.84
116_L	120_I	0.704	0.84
96_I	99_L	0.700	0.84
44_V	48_L	0.700	0.84
27_D	134_R	0.698	0.84
11_K	15_K	0.695	0.84
108_H	165_V	0.693	0.83
49_Y	162_Q	0.692	0.83
150_S	157_L	0.690	0.83
93_S	96_I	0.687	0.83
68_S	72_G	0.687	0.83
105_P	118_R	0.673	0.82
108_H	111_A	0.671	0.81
7_G	83_K	0.668	0.81
104_L	107_G	0.667	0.81
129_V	132_L	0.663	0.81
11_K	139_D	0.655	0.80
22_I	29_V	0.653	0.80
132_L	136_K	0.651	0.80
106_G	112_S	0.649	0.79
129_V	142_V	0.649	0.79
31_A	127_S	0.646	0.79
59_I	148_L	0.642	0.79
58_R	88_E	0.641	0.78
33_G	36_D	0.641	0.78
31_A	131_I	0.640	0.78
39_N	107_G	0.637	0.78
103_I	153_F	0.633	0.78
52_L	158_Y	0.633	0.78
103_I	156_A	0.632	0.77
3_V	90_S	0.630	0.77
87_E	91_S	0.630	0.77
115_H	156_A	0.627	0.77
128_V	142_V	0.626	0.77
111_A	156_A	0.626	0.77
67_S	107_G	0.624	0.77
95_G	158_Y	0.624	0.77
31_A	35_L	0.623	0.76
37_E	120_I	0.618	0.76
3_V	8_T	0.615	0.76
114_L	155_L	0.613	0.75
52_L	92_F	0.611	0.75
113_F	117_A	0.611	0.75
108_H	167_E	0.606	0.74
49_Y	159_V	0.600	0.74
43_G	67_S	0.596	0.73
65_S	170_W	0.594	0.73
99_L	153_F	0.593	0.73
14_T	28_I	0.591	0.73
35_L	145_L	0.589	0.72
16_L	28_I	0.589	0.72
91_S	94_K	0.587	0.72
161_K	165_V	0.585	0.72
27_D	31_A	0.582	0.72
69_E	75_M	0.581	0.71
110_A	113_F	0.579	0.71
121_C	148_L	0.575	0.71
34_D	126_R	0.573	0.70
23_W	129_V	0.572	0.70
32_I	90_S	0.571	0.70
7_G	143_K	0.570	0.70
40_A	156_A	0.569	0.70
11_K	21_E	0.566	0.69
9_G	12_G	0.564	0.69
27_D	130_K	0.564	0.69
138_K	141_H	0.561	0.69
74_D	136_K	0.560	0.69
15_K	20_G	0.558	0.68
60_Q	67_S	0.557	0.68
35_L	124_S	0.557	0.68
96_I	101_N	0.555	0.68
38_L	41_S	0.552	0.68
57_V	61_S	0.550	0.67
17_P	20_G	0.549	0.67
4_W	150_S	0.548	0.67
4_W	96_I	0.545	0.67
115_H	157_L	0.545	0.67
18_S	73_F	0.542	0.66
78_E	84_W	0.535	0.65
77_F	140_V	0.534	0.65
40_A	44_V	0.534	0.65
84_W	87_E	0.531	0.65
61_S	170_W	0.529	0.64
54_E	94_K	0.525	0.64
39_N	105_P	0.524	0.64
38_L	42_L	0.524	0.64
38_L	45_I	0.523	0.63
109_V	112_S	0.519	0.63
131_I	137_A	0.517	0.63
103_I	157_L	0.516	0.62
61_S	75_M	0.515	0.62
139_D	143_K	0.513	0.62
111_A	114_L	0.513	0.62
58_R	94_K	0.513	0.62
17_P	93_S	0.512	0.62
64_F	170_W	0.511	0.62
124_S	131_I	0.511	0.62
97_P	167_E	0.510	0.61
47_S	108_H	0.509	0.61
58_R	140_V	0.506	0.61
75_M	78_E	0.504	0.61
7_G	79_E	0.504	0.61
92_F	170_W	0.502	0.60
33_G	142_V	0.500	0.60

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2nt8A	3	0.9884	100	0.06	Contact Map
3ci3A	3	0.9942	100	0.064	Contact Map
2idxA	3	0.9884	100	0.064	Contact Map
3ke4A	3	0.9302	100	0.065	Contact Map
2zhyA	3	0.9826	100	0.069	Contact Map
1rtyA	3	0.8953	100	0.071	Contact Map
2ah6A	3	0.8837	100	0.079	Contact Map
2g2dA	3	0.843	100	0.08	Contact Map
1wvtA	3	0.8605	100	0.089	Contact Map
1wy1A	3	0.8314	100	0.092	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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