Q980D6 - SULSO - GREMLIN Contacts

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Q980D6 - Ornithine cyclodeaminase related protein (Ocd-like1)

UniProt:	Q980D6	Sequences: MIILTRKDLDELLKAEIAVSSVKEAFKLHYQKKVDQPQRLVMSVKGNWWGLMPSSTDYSFVTKIVNVIPENKERGLPLVQGVVILMSPDTGEILAIIDGTTLTAIRTAAASILSTELAINGRNIGILGIIGAGTEAYYHAKLALEYFKVQKLYISARKSHFELAKRVGGEATDLETLLKNSDTIFATTSSNFPVVLGKYLKDVFHLSSIGAHTPDSRELDDDTIIKVKSYIVDSLEAVSKESGDYIIPKQRGLLENKMIKELGEIIEKGIKIERPSLFKTVGIAVEDNITAHIAYQEALRRGIGFNVSI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	309 (290)
Sequences:	3904 (2810)
Seq/√Len:	165.0

HALSA - Q9HQ24 Q9HN71
SULSO - Q980D6 Q97TY8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
125_G	150_Q	4.339	1.00
23_K	116_E	4.233	1.00
132_A	156_A	3.721	1.00
137_Y	166_R	3.371	1.00
126_I	153_Y	3.182	1.00
175_E	179_K	2.999	1.00
205_H	276_S	2.944	1.00
200_L	223_T	2.904	1.00
117_L	266_I	2.866	1.00
175_E	199_Y	2.863	1.00
5_T	8_D	2.822	1.00
173_D	176_T	2.733	1.00
141_K	170_E	2.568	1.00
17_I	297_E	2.468	1.00
128_G	177_L	2.443	1.00
126_I	151_K	2.429	1.00
129_I	140_A	2.356	1.00
128_G	181_S	2.297	1.00
228_K	274_R	2.222	1.00
203_V	274_R	2.082	1.00
292_H	296_Q	2.079	1.00
140_A	167_V	2.047	1.00
94_L	295_Y	1.998	1.00
219_L	277_L	1.987	1.00
4_L	298_A	1.976	1.00
140_A	152_L	1.967	1.00
61_V	288_N	1.902	1.00
14_K	17_I	1.873	1.00
197_G	226_K	1.871	1.00
196_L	199_Y	1.844	1.00
197_G	220_D	1.842	1.00
115_T	143_A	1.837	1.00
201_K	204_F	1.811	1.00
23_K	117_L	1.798	1.00
85_L	295_Y	1.779	1.00
70_E	73_E	1.767	1.00
224_I	277_L	1.680	1.00
153_Y	180_N	1.679	1.00
127_L	149_V	1.668	1.00
20_S	116_E	1.666	1.00
83_V	291_A	1.664	1.00
23_K	27_K	1.647	1.00
115_T	207_S	1.631	1.00
161_F	165_K	1.613	1.00
25_A	289_I	1.609	1.00
196_L	220_D	1.595	1.00
132_A	154_I	1.581	1.00
87_S	94_L	1.576	1.00
178_L	199_Y	1.571	1.00
9_L	294_A	1.539	1.00
121_G	182_D	1.528	1.00
83_V	102_L	1.518	1.00
127_L	143_A	1.516	1.00
295_Y	299_L	1.511	1.00
227_V	277_L	1.500	1.00
222_D	225_I	1.499	1.00
16_E	145_E	1.474	1.00
212_H	216_S	1.462	1.00
95_A	295_Y	1.451	1.00
217_R	221_D	1.449	1.00
270_I	274_R	1.448	1.00
10_D	101_T	1.447	1.00
116_E	147_F	1.445	1.00
153_Y	171_A	1.443	1.00
83_V	99_G	1.441	1.00
22_V	113_L	1.439	1.00
9_L	97_I	1.438	1.00
27_K	266_I	1.434	1.00
180_N	201_K	1.421	1.00
149_V	183_T	1.420	1.00
71_N	76_L	1.418	1.00
271_K	274_R	1.416	1.00
255_E	258_M	1.397	1.00
202_D	273_E	1.376	1.00
235_L	264_E	1.368	1.00
18_A	290_T	1.360	1.00
208_S	219_L	1.355	1.00
46_G	70_E	1.331	1.00
121_G	124_I	1.323	1.00
74_R	89_D	1.320	1.00
154_I	163_L	1.314	1.00
87_S	90_T	1.313	1.00
21_S	293_I	1.313	1.00
8_D	11_E	1.312	1.00
125_G	182_D	1.311	1.00
111_S	139_H	1.297	1.00
115_T	205_H	1.296	1.00
158_K	161_F	1.295	1.00
269_G	274_R	1.292	1.00
122_R	272_I	1.289	1.00
85_L	291_A	1.278	1.00
231_I	265_I	1.276	1.00
110_A	286_E	1.273	1.00
59_S	296_Q	1.258	1.00
226_K	275_P	1.253	1.00
6_R	98_D	1.250	1.00
163_L	167_V	1.249	1.00
178_L	184_I	1.249	1.00
130_I	174_L	1.245	1.00
164_A	168_G	1.241	1.00
127_L	152_L	1.227	1.00
177_L	181_S	1.221	1.00
130_I	195_V	1.221	1.00
19_V	146_Y	1.212	1.00
118_A	231_I	1.209	1.00
4_L	8_D	1.205	1.00
87_S	92_E	1.204	1.00
12_L	298_A	1.204	1.00
130_I	155_S	1.200	1.00
151_K	180_N	1.196	1.00
124_I	183_T	1.181	1.00
182_D	201_K	1.180	1.00
119_I	124_I	1.173	1.00
124_I	147_F	1.162	1.00
249_K	254_L	1.158	1.00
235_L	261_E	1.155	1.00
230_Y	254_L	1.152	1.00
128_G	153_Y	1.151	1.00
113_L	117_L	1.139	1.00
162_E	166_R	1.136	1.00
115_T	183_T	1.119	1.00
26_F	286_E	1.110	1.00
81_G	99_G	1.106	1.00
112_I	146_Y	1.101	1.00
186_A	208_S	1.094	1.00
293_I	297_E	1.093	1.00
234_S	237_A	1.085	1.00
61_V	85_L	1.085	1.00
165_K	168_G	1.076	1.00
33_K	57_D	1.075	0.99
65_V	81_G	1.070	0.99
156_A	159_S	1.069	0.99
108_A	139_H	1.065	0.99
220_D	223_T	1.063	0.99
235_L	256_N	1.053	0.99
6_R	10_D	1.051	0.99
124_I	182_D	1.051	0.99
140_A	163_L	1.050	0.99
15_A	142_L	1.049	0.99
24_E	27_K	1.047	0.99
161_F	164_A	1.046	0.99
28_L	33_K	1.043	0.99
24_E	28_L	1.040	0.99
64_I	84_I	1.039	0.99
185_F	207_S	1.037	0.99
126_I	180_N	1.029	0.99
165_K	169_G	1.025	0.99
16_E	20_S	1.023	0.99
231_I	260_K	1.022	0.99
28_L	58_Y	1.018	0.99
65_V	79_V	1.015	0.99
76_L	90_T	1.008	0.99
132_A	163_L	1.005	0.99
112_I	143_A	0.993	0.99
203_V	269_G	0.990	0.99
135_E	139_H	0.989	0.99
175_E	196_L	0.987	0.99
244_D	279_K	0.986	0.99
136_A	156_A	0.979	0.99
27_K	31_Q	0.979	0.99
200_L	204_F	0.977	0.99
76_L	92_E	0.975	0.99
19_V	112_I	0.969	0.99
260_K	264_E	0.966	0.99
254_L	258_M	0.959	0.99
64_I	86_M	0.959	0.99
221_D	248_P	0.956	0.99
184_I	200_L	0.954	0.99
59_S	94_L	0.953	0.99
4_L	97_I	0.948	0.99
160_H	164_A	0.946	0.99
203_V	275_P	0.942	0.99
139_H	187_T	0.939	0.99
174_L	178_L	0.938	0.99
176_T	180_N	0.938	0.99
143_A	185_F	0.936	0.99
31_Q	267_E	0.933	0.99
84_I	93_I	0.931	0.99
132_A	136_A	0.925	0.98
97_I	294_A	0.920	0.98
119_I	147_F	0.917	0.98
26_F	110_A	0.916	0.98
54_S	284_A	0.916	0.98
81_G	100_T	0.915	0.98
115_T	147_F	0.910	0.98
232_V	238_V	0.908	0.98
39_R	52_M	0.906	0.98
269_G	272_I	0.906	0.98
114_S	280_T	0.905	0.98
127_L	185_F	0.905	0.98
116_E	146_Y	0.900	0.98
84_I	96_I	0.897	0.98
110_A	278_F	0.896	0.98
228_K	231_I	0.894	0.98
27_K	267_E	0.887	0.98
136_A	163_L	0.886	0.98
80_Q	92_E	0.875	0.98
128_G	184_I	0.873	0.98
191_N	215_D	0.868	0.98
138_Y	141_K	0.868	0.98
217_R	247_I	0.866	0.98
139_H	209_I	0.865	0.98
20_S	24_E	0.864	0.98
197_G	223_T	0.859	0.98
128_G	174_L	0.857	0.98
68_I	91_G	0.856	0.97
115_T	185_F	0.854	0.97
126_I	182_D	0.853	0.97
59_S	292_H	0.850	0.97
63_K	287_D	0.850	0.97
232_V	245_Y	0.849	0.97
144_L	149_V	0.845	0.97
50_G	65_V	0.845	0.97
207_S	276_S	0.842	0.97
216_S	279_K	0.834	0.97
102_L	294_A	0.831	0.97
52_M	65_V	0.828	0.97
112_I	145_E	0.827	0.97
179_K	199_Y	0.825	0.97
156_A	160_H	0.825	0.97
234_S	261_E	0.823	0.97
104_A	134_T	0.819	0.97
249_K	256_N	0.816	0.97
17_I	20_S	0.816	0.97
172_T	176_T	0.815	0.97
162_E	165_K	0.812	0.97
50_G	212_H	0.810	0.97
37_P	42_M	0.810	0.97
29_H	234_S	0.809	0.96
256_N	259_I	0.806	0.96
97_I	291_A	0.802	0.96
39_R	241_E	0.800	0.96
61_V	83_V	0.800	0.96
132_A	159_S	0.798	0.96
21_S	25_A	0.798	0.96
198_K	222_D	0.797	0.96
23_K	113_L	0.796	0.96
18_A	105_I	0.796	0.96
117_L	265_I	0.794	0.96
128_G	173_D	0.789	0.96
71_N	74_R	0.785	0.96
7_K	11_E	0.784	0.96
71_N	75_G	0.784	0.96
155_S	195_V	0.783	0.96
12_L	297_E	0.776	0.96
159_S	162_E	0.775	0.96
121_G	272_I	0.772	0.95
198_K	226_K	0.770	0.95
15_A	112_I	0.769	0.95
204_F	275_P	0.766	0.95
130_I	194_V	0.765	0.95
85_L	288_N	0.762	0.95
114_S	207_S	0.759	0.95
186_A	195_V	0.756	0.95
52_M	241_E	0.756	0.95
7_K	10_D	0.754	0.95
50_G	79_V	0.753	0.95
67_V	79_V	0.751	0.95
101_T	105_I	0.748	0.95
115_T	119_I	0.746	0.94
79_V	103_T	0.743	0.94
237_A	281_V	0.734	0.94
212_H	237_A	0.733	0.94
128_G	155_S	0.732	0.94
221_D	225_I	0.725	0.94
206_L	223_T	0.725	0.94
26_F	29_H	0.723	0.94
50_G	216_S	0.722	0.93
111_S	207_S	0.721	0.93
104_A	138_Y	0.719	0.93
128_G	171_A	0.708	0.93
112_I	147_F	0.707	0.93
171_A	177_L	0.703	0.93
50_G	67_V	0.702	0.93
30_Y	264_E	0.701	0.92
153_Y	177_L	0.698	0.92
223_T	277_L	0.697	0.92
149_V	152_L	0.695	0.92
112_I	127_L	0.695	0.92
212_H	279_K	0.695	0.92
86_M	93_I	0.694	0.92
177_L	180_N	0.692	0.92
15_A	108_A	0.689	0.92
115_T	276_S	0.689	0.92
261_E	264_E	0.688	0.92
9_L	13_L	0.687	0.92
264_E	268_K	0.684	0.92
245_Y	259_I	0.683	0.91
203_V	271_K	0.681	0.91
108_A	138_Y	0.678	0.91
39_R	281_V	0.674	0.91
41_V	48_W	0.674	0.91
141_K	167_V	0.674	0.91
175_E	198_K	0.673	0.91
155_S	174_L	0.673	0.91
195_V	206_L	0.671	0.91
136_A	187_T	0.671	0.91
68_I	87_S	0.667	0.90
126_I	181_S	0.667	0.90
237_A	279_K	0.667	0.90
82_V	96_I	0.666	0.90
147_F	183_T	0.666	0.90
265_I	268_K	0.665	0.90
63_K	103_T	0.659	0.90
210_G	218_E	0.657	0.90
137_Y	167_V	0.654	0.90
230_Y	257_K	0.653	0.90
78_L	103_T	0.652	0.89
15_A	145_E	0.650	0.89
111_S	209_I	0.649	0.89
30_Y	261_E	0.649	0.89
195_V	220_D	0.647	0.89
119_I	205_H	0.647	0.89
49_W	66_N	0.641	0.89
154_I	164_A	0.641	0.89
94_L	299_L	0.640	0.89
123_N	272_I	0.638	0.88
232_V	235_L	0.634	0.88
167_V	170_E	0.633	0.88
171_A	176_T	0.633	0.88
213_T	216_S	0.632	0.88
122_R	147_F	0.630	0.88
119_I	183_T	0.628	0.88
21_S	289_I	0.627	0.88
200_L	206_L	0.623	0.87
202_D	275_P	0.623	0.87
59_S	295_Y	0.622	0.87
93_I	96_I	0.620	0.87
230_Y	245_Y	0.617	0.87
81_G	103_T	0.617	0.87
48_W	213_T	0.614	0.87
163_L	166_R	0.612	0.86
197_G	222_D	0.610	0.86
174_L	177_L	0.608	0.86
60_F	68_I	0.608	0.86
200_L	275_P	0.607	0.86
209_I	280_T	0.602	0.85
41_V	284_A	0.600	0.85
21_S	290_T	0.600	0.85
51_L	64_I	0.599	0.85
206_L	219_L	0.597	0.85
67_V	81_G	0.597	0.85
179_K	201_K	0.593	0.85
242_S	279_K	0.593	0.85
6_R	99_G	0.593	0.85
48_W	212_H	0.592	0.84
126_I	150_Q	0.592	0.84
249_K	255_E	0.592	0.84
38_Q	237_A	0.588	0.84
293_I	296_Q	0.588	0.84
114_S	262_L	0.584	0.84
234_S	283_I	0.583	0.84
203_V	272_I	0.581	0.83
22_V	109_A	0.580	0.83
82_V	93_I	0.579	0.83
4_L	294_A	0.578	0.83
33_K	58_Y	0.574	0.83
166_R	169_G	0.570	0.82
52_M	281_V	0.570	0.82
114_S	278_F	0.570	0.82
188_T	218_E	0.570	0.82
184_I	206_L	0.569	0.82
156_A	280_T	0.567	0.82
34_V	56_T	0.567	0.82
3_I	96_I	0.566	0.82
37_P	53_P	0.566	0.82
175_E	178_L	0.563	0.81
190_S	193_P	0.561	0.81
13_L	294_A	0.561	0.81
41_V	65_V	0.561	0.81
110_A	283_I	0.559	0.81
67_V	212_H	0.557	0.81
22_V	286_E	0.557	0.81
245_Y	254_L	0.556	0.81
28_L	31_Q	0.555	0.81
263_G	266_I	0.553	0.80
17_I	293_I	0.552	0.80
187_T	209_I	0.548	0.80
65_V	103_T	0.547	0.80
184_I	204_F	0.546	0.79
196_L	222_D	0.545	0.79
12_L	294_A	0.545	0.79
62_T	84_I	0.544	0.79
129_I	154_I	0.542	0.79
108_A	142_L	0.541	0.79
212_H	281_V	0.541	0.79
53_P	65_V	0.540	0.79
296_Q	299_L	0.540	0.79
230_Y	258_M	0.540	0.79
241_E	246_I	0.539	0.79
111_S	143_A	0.538	0.78
184_I	195_V	0.538	0.78
242_S	281_V	0.537	0.78
246_I	279_K	0.537	0.78
20_S	23_K	0.536	0.78
118_A	276_S	0.535	0.78
18_A	22_V	0.535	0.78
19_V	145_E	0.534	0.78
49_W	60_F	0.533	0.78
135_E	185_F	0.532	0.78
255_E	259_I	0.531	0.78
41_V	50_G	0.531	0.78
50_G	237_A	0.530	0.77
126_I	201_K	0.529	0.77
161_F	168_G	0.528	0.77
127_L	140_A	0.528	0.77
52_M	67_V	0.525	0.77
59_S	288_N	0.523	0.76
18_A	142_L	0.522	0.76
30_Y	267_E	0.521	0.76
99_G	102_L	0.520	0.76
70_E	74_R	0.519	0.76
106_R	281_V	0.519	0.76
228_K	276_S	0.517	0.76
157_R	280_T	0.516	0.76
19_V	109_A	0.516	0.76
128_G	178_L	0.515	0.75
197_G	275_P	0.514	0.75
22_V	290_T	0.514	0.75
29_H	285_V	0.513	0.75
238_V	245_Y	0.513	0.75
195_V	223_T	0.512	0.75
56_T	289_I	0.511	0.75
8_D	12_L	0.509	0.75
60_F	88_P	0.509	0.75
48_W	216_S	0.509	0.75
125_G	151_K	0.507	0.74
153_Y	181_S	0.505	0.74
173_D	177_L	0.505	0.74
150_Q	158_K	0.504	0.74
37_P	44_V	0.504	0.74
14_K	297_E	0.501	0.73
238_V	281_V	0.501	0.73
218_E	280_T	0.500	0.73
55_S	60_F	0.500	0.73

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1omoA	2	0.9871	100	0.274	Contact Map
4mp8A	2	0.9806	100	0.295	Contact Map
3hdjA	2	0.9612	100	0.297	Contact Map
4bvaA	2	0.9256	100	0.31	Contact Map
1x7dA	2	0.9676	100	0.375	Contact Map
3oj0A	1	0.4304	99.2	0.847	Contact Map
4ppmA	2	0	99.1	0.857	Contact Map
3pwzA	1	0.7994	98.5	0.883	Contact Map
3obbA	4	0.5728	98.4	0.888	Contact Map
3g0oA	3	0.5793	98.3	0.889	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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