Q980D0 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q980D0 - mRNA 3'-end processing factor, putative

UniProt:	Q980D0	Sequences: MPMTFVFITVGFSITIFFSLVSIITLVAFICSVFIPILSIFFRSEGFIFAITCFIEEEVNLIVCGYDISQMNYFLKILGGGREVGRSAIEVGNSDGSIILDYGVNFDEKDNPNFPLQEMPGKVKGFVVSHAHLDHIGALPIYQIGSLNTKVYGTVATRIITETMLKDFLKLSGAKIPYEWVEVRKTMDNFMAIGYGEEVEIDSLKVSLYNAGHIPGSSIIKVSSEKGVIAFTGDINLTETKLMKPAEIENIGDANVLVMESTYGKFNHPNRKDVENDFYDKVMEVVESGGTVLVPAFSLARSQEVLSVLAERNFPYPVYYDGMSREITEIMLGFKEFLNRPDLLKKAYDNFNYVKGWEDRHRAWKEKGVIVASAGMLKGGPAVYYFKKLSENSKNAVFLVSYQAINTPGRKLLEMGKFDEYSGLLKARLEIFDFSSHAGRRQLLEIVKSVKDLEKVVLVHGSPDNESSLADLIKQEIGVEVITPENGQEISL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	492 (387)
Sequences:	5233 (3231)
Seq/√Len:	164.3

BACSU - RNJ1 RNJ2
HALSA - Q9HS54 Q9HMJ7 RNJ
SULSO - Q980D0 Q7LYL5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
126_F	139_L	4.261	1.00
96_G	124_K	3.779	1.00
127_V	220_I	3.645	1.00
100_L	129_S	3.459	1.00
223_S	228_V	3.455	1.00
112_P	115_P	3.217	1.00
128_V	161_T	3.143	1.00
198_E	205_K	3.139	1.00
74_F	92_G	3.006	1.00
154_T	218_S	2.918	1.00
470_A	474_K	2.854	1.00
153_G	158_R	2.710	1.00
221_K	228_V	2.660	1.00
448_K	476_E	2.602	1.00
127_V	206_V	2.557	1.00
92_G	97_S	2.533	1.00
256_V	457_V	2.517	1.00
76_K	489_E	2.508	1.00
200_E	205_K	2.455	1.00
440_R	472_L	2.444	1.00
205_K	223_S	2.414	1.00
410_R	414_E	2.376	1.00
89_I	459_V	2.261	1.00
198_E	207_S	2.178	1.00
206_V	222_V	2.145	1.00
150_K	191_M	2.141	1.00
259_M	458_L	2.122	1.00
117_Q	145_G	2.091	1.00
91_V	100_L	2.088	1.00
152_Y	193_I	2.087	1.00
356_G	359_D	2.063	1.00
119_M	122_K	2.022	1.00
98_I	125_G	2.020	1.00
159_I	334_F	2.005	1.00
457_V	490_I	1.961	1.00
195_Y	218_S	1.942	1.00
75_L	258_V	1.940	1.00
466_E	483_T	1.924	1.00
97_S	122_K	1.899	1.00
100_L	231_F	1.874	1.00
96_G	203_S	1.855	1.00
286_V	292_V	1.823	1.00
158_R	190_F	1.812	1.00
159_I	333_G	1.800	1.00
194_G	197_E	1.794	1.00
267_N	441_R	1.779	1.00
161_T	190_F	1.776	1.00
196_G	247_E	1.776	1.00
484_P	490_I	1.747	1.00
206_V	220_I	1.736	1.00
193_I	208_L	1.728	1.00
126_F	142_Y	1.725	1.00
285_V	396_A	1.716	1.00
261_S	469_L	1.711	1.00
126_F	149_T	1.708	1.00
91_V	222_V	1.702	1.00
455_K	480_E	1.692	1.00
223_S	252_G	1.688	1.00
208_L	220_I	1.686	1.00
288_S	428_R	1.685	1.00
474_K	478_G	1.678	1.00
207_S	223_S	1.677	1.00
209_Y	219_I	1.674	1.00
162_E	166_K	1.655	1.00
284_E	428_R	1.628	1.00
74_F	489_E	1.619	1.00
396_A	430_E	1.618	1.00
255_N	454_E	1.614	1.00
98_I	204_L	1.587	1.00
230_A	254_A	1.571	1.00
455_K	482_I	1.570	1.00
392_N	395_N	1.561	1.00
257_L	450_V	1.560	1.00
153_G	161_T	1.547	1.00
309_L	318_V	1.529	1.00
73_Y	229_I	1.528	1.00
158_R	192_A	1.519	1.00
309_L	369_V	1.516	1.00
447_V	473_I	1.515	1.00
156_A	337_F	1.512	1.00
97_S	123_V	1.512	1.00
219_I	230_A	1.507	1.00
258_V	459_V	1.505	1.00
294_V	305_V	1.505	1.00
355_K	363_A	1.502	1.00
207_S	221_K	1.495	1.00
363_A	368_G	1.485	1.00
292_V	398_F	1.481	1.00
471_D	474_K	1.472	1.00
293_L	382_A	1.450	1.00
470_A	481_V	1.447	1.00
75_L	91_V	1.428	1.00
320_Y	328_T	1.427	1.00
99_I	123_V	1.425	1.00
76_K	92_G	1.421	1.00
280_D	284_E	1.421	1.00
283_M	311_E	1.416	1.00
75_L	256_V	1.406	1.00
267_N	440_R	1.403	1.00
155_V	194_G	1.396	1.00
482_I	490_I	1.392	1.00
319_Y	360_R	1.387	1.00
458_L	466_E	1.385	1.00
403_Q	409_G	1.384	1.00
90_E	97_S	1.383	1.00
139_L	186_T	1.381	1.00
282_V	309_L	1.372	1.00
125_G	152_Y	1.369	1.00
290_G	396_A	1.367	1.00
468_S	471_D	1.351	1.00
214_I	436_S	1.342	1.00
283_M	287_E	1.338	1.00
284_E	288_S	1.337	1.00
257_L	447_V	1.336	1.00
88_A	99_I	1.329	1.00
299_L	327_I	1.328	1.00
259_M	469_L	1.327	1.00
136_I	161_T	1.321	1.00
251_I	450_V	1.319	1.00
286_V	369_V	1.315	1.00
230_A	450_V	1.312	1.00
193_I	199_V	1.311	1.00
456_V	473_I	1.309	1.00
261_S	461_G	1.305	1.00
200_E	203_S	1.286	1.00
114_F	142_Y	1.283	1.00
456_V	469_L	1.281	1.00
329_E	333_G	1.276	1.00
272_K	439_G	1.272	1.00
129_S	231_F	1.261	1.00
230_A	257_L	1.259	1.00
389_L	395_N	1.245	1.00
135_H	460_H	1.240	1.00
221_K	230_A	1.237	1.00
128_V	153_G	1.231	1.00
259_M	447_V	1.221	1.00
128_V	157_T	1.219	1.00
305_V	369_V	1.218	1.00
235_I	259_M	1.213	1.00
399_L	412_L	1.208	1.00
485_E	488_Q	1.207	1.00
360_R	363_A	1.205	1.00
238_T	445_E	1.204	1.00
127_V	208_L	1.201	1.00
195_Y	217_S	1.198	1.00
141_I	145_G	1.190	1.00
291_T	368_G	1.190	1.00
93_N	203_S	1.181	1.00
277_D	280_D	1.181	1.00
195_Y	210_N	1.175	1.00
125_G	201_I	1.174	1.00
100_L	220_I	1.173	1.00
286_V	316_Y	1.173	1.00
438_A	442_Q	1.171	1.00
440_R	468_S	1.170	1.00
155_V	192_A	1.163	1.00
78_L	90_E	1.163	1.00
93_N	96_G	1.160	1.00
252_G	451_K	1.153	1.00
265_K	464_D	1.150	1.00
473_I	477_I	1.146	1.00
163_T	330_I	1.143	1.00
90_E	99_I	1.140	1.00
441_R	444_L	1.137	1.00
386_F	397_V	1.129	1.00
82_R	463_P	1.126	1.00
133_L	164_M	1.124	1.00
421_Y	485_E	1.119	1.00
359_D	362_R	1.115	1.00
444_L	472_L	1.106	1.00
127_V	222_V	1.106	1.00
209_Y	221_K	1.103	1.00
458_L	481_V	1.097	1.00
474_K	480_E	1.082	1.00
74_F	491_S	1.080	1.00
127_V	201_I	1.072	0.99
302_S	320_Y	1.070	0.99
81_G	484_P	1.063	0.99
310_A	340_R	1.059	0.99
92_G	122_K	1.058	0.99
154_T	157_T	1.056	0.99
75_L	89_I	1.038	0.99
393_S	426_K	1.037	0.99
100_L	258_V	1.037	0.99
467_S	470_A	1.033	0.99
154_T	208_L	1.031	0.99
82_R	485_E	1.030	0.99
472_L	476_E	1.029	0.99
98_I	127_V	1.026	0.99
465_N	469_L	1.025	0.99
143_Q	186_T	1.025	0.99
94_S	203_S	1.021	0.99
196_G	209_Y	1.019	0.99
132_H	437_H	1.016	0.99
98_I	124_K	1.015	0.99
444_L	476_E	1.009	0.99
262_T	460_H	1.008	0.99
424_L	427_A	1.007	0.99
128_V	139_L	1.006	0.99
125_G	150_K	1.004	0.99
93_N	204_L	1.002	0.99
296_A	302_S	1.002	0.99
296_A	371_V	0.994	0.99
235_I	443_L	0.993	0.99
211_A	217_S	0.992	0.99
354_V	363_A	0.992	0.99
291_T	389_L	0.992	0.99
115_P	118_E	0.984	0.99
232_T	446_I	0.979	0.99
120_P	147_L	0.978	0.99
129_S	258_V	0.976	0.99
254_A	257_L	0.971	0.99
293_L	372_A	0.970	0.99
113_N	116_L	0.967	0.99
265_K	468_S	0.966	0.99
160_I	327_I	0.964	0.99
281_K	430_E	0.963	0.99
259_M	456_V	0.958	0.99
471_D	475_Q	0.955	0.99
135_H	234_D	0.954	0.99
97_S	116_L	0.952	0.99
397_V	427_A	0.951	0.99
224_S	227_G	0.951	0.99
447_V	456_V	0.949	0.99
412_L	425_L	0.949	0.99
237_L	246_A	0.948	0.99
91_V	98_I	0.943	0.99
425_L	429_L	0.938	0.99
303_Q	307_S	0.938	0.99
482_I	488_Q	0.935	0.99
306_L	318_V	0.934	0.99
463_P	467_S	0.932	0.99
81_G	486_N	0.929	0.99
232_T	259_M	0.928	0.98
91_V	231_F	0.926	0.98
339_N	354_V	0.924	0.98
131_A	214_I	0.923	0.98
164_M	323_M	0.921	0.98
93_N	225_E	0.916	0.98
404_A	407_T	0.914	0.98
117_Q	120_P	0.913	0.98
276_N	280_D	0.913	0.98
234_D	460_H	0.910	0.98
443_L	472_L	0.910	0.98
84_V	262_T	0.903	0.98
129_S	220_I	0.902	0.98
308_V	434_F	0.896	0.98
132_H	213_H	0.893	0.98
390_S	397_V	0.891	0.98
130_H	213_H	0.887	0.98
228_V	252_G	0.887	0.98
243_M	300_A	0.883	0.98
354_V	359_D	0.881	0.98
317_P	367_K	0.879	0.98
285_V	398_F	0.878	0.98
143_Q	151_V	0.877	0.98
143_Q	189_N	0.875	0.98
259_M	443_L	0.873	0.98
445_E	448_K	0.871	0.98
130_H	135_H	0.870	0.98
307_S	338_L	0.870	0.98
116_L	120_P	0.867	0.98
273_D	276_N	0.866	0.98
134_D	437_H	0.866	0.98
153_G	190_F	0.861	0.98
306_L	371_V	0.859	0.98
257_L	456_V	0.859	0.98
76_K	90_E	0.859	0.98
99_I	116_L	0.858	0.97
232_T	257_L	0.857	0.97
398_F	430_E	0.857	0.97
114_F	117_Q	0.854	0.97
199_V	206_V	0.854	0.97
275_E	311_E	0.853	0.97
267_N	439_G	0.850	0.97
207_S	250_N	0.841	0.97
159_I	330_I	0.841	0.97
237_L	442_Q	0.838	0.97
387_K	391_E	0.838	0.97
440_R	443_L	0.837	0.97
261_S	466_E	0.836	0.97
130_H	437_H	0.833	0.97
134_D	460_H	0.833	0.97
248_I	251_I	0.827	0.97
143_Q	148_N	0.823	0.97
136_I	164_M	0.823	0.97
294_V	400_V	0.823	0.97
288_S	396_A	0.821	0.97
98_I	201_I	0.819	0.97
292_V	396_A	0.819	0.97
163_T	326_E	0.818	0.97
120_P	123_V	0.816	0.97
97_S	124_K	0.816	0.97
144_I	168_F	0.814	0.97
217_S	233_G	0.814	0.97
441_R	445_E	0.811	0.96
100_L	222_V	0.811	0.96
264_G	443_L	0.811	0.96
95_D	122_K	0.810	0.96
198_E	223_S	0.809	0.96
320_Y	354_V	0.801	0.96
418_F	424_L	0.800	0.96
193_I	206_V	0.794	0.96
219_I	251_I	0.793	0.96
230_A	251_I	0.791	0.96
328_T	371_V	0.787	0.96
96_G	202_D	0.784	0.96
313_N	367_K	0.782	0.96
219_I	235_I	0.781	0.96
384_Y	387_K	0.780	0.96
211_A	219_I	0.779	0.96
89_I	100_L	0.777	0.96
116_L	123_V	0.776	0.95
390_S	425_L	0.772	0.95
474_K	481_V	0.769	0.95
308_V	311_E	0.768	0.95
293_L	389_L	0.762	0.95
98_I	222_V	0.758	0.95
291_T	367_K	0.758	0.95
318_V	369_V	0.757	0.95
136_I	160_I	0.754	0.95
470_A	483_T	0.752	0.95
326_E	329_E	0.752	0.95
270_N	273_D	0.750	0.95
390_S	418_F	0.746	0.94
402_Y	412_L	0.746	0.94
132_H	460_H	0.745	0.94
264_G	468_S	0.744	0.94
399_L	413_L	0.744	0.94
209_Y	230_A	0.743	0.94
329_E	332_L	0.742	0.94
364_W	367_K	0.742	0.94
281_K	398_F	0.740	0.94
448_K	477_I	0.739	0.94
239_E	448_K	0.738	0.94
274_V	434_F	0.738	0.94
262_T	297_F	0.738	0.94
157_T	303_Q	0.736	0.94
269_P	277_D	0.736	0.94
291_T	395_N	0.735	0.94
282_V	286_V	0.735	0.94
96_G	122_K	0.734	0.94
282_V	292_V	0.734	0.94
112_P	116_L	0.733	0.94
279_Y	313_N	0.731	0.94
164_M	299_L	0.730	0.94
134_D	262_T	0.729	0.94
159_I	162_E	0.724	0.93
158_R	162_E	0.723	0.93
254_A	450_V	0.722	0.93
293_L	395_N	0.720	0.93
204_L	224_S	0.719	0.93
113_N	117_Q	0.718	0.93
297_F	460_H	0.716	0.93
92_G	95_D	0.714	0.93
166_K	169_L	0.711	0.93
152_Y	191_M	0.707	0.93
271_R	445_E	0.705	0.93
100_L	459_V	0.704	0.93
403_Q	412_L	0.702	0.92
323_M	379_G	0.698	0.92
91_V	229_I	0.695	0.92
444_L	473_I	0.693	0.92
447_V	479_V	0.693	0.92
241_K	275_E	0.692	0.92
88_A	102_Y	0.690	0.92
447_V	469_L	0.689	0.92
132_H	135_H	0.689	0.92
139_L	149_T	0.687	0.92
210_N	216_G	0.686	0.92
320_Y	325_R	0.685	0.91
130_H	134_D	0.681	0.91
168_F	171_L	0.681	0.91
284_E	287_E	0.681	0.91
297_F	401_S	0.681	0.91
134_D	213_H	0.679	0.91
82_R	466_E	0.678	0.91
81_G	459_V	0.677	0.91
283_M	308_V	0.676	0.91
73_Y	226_K	0.675	0.91
370_I	385_Y	0.675	0.91
279_Y	308_V	0.673	0.91
211_A	246_A	0.672	0.91
256_V	454_E	0.671	0.91
458_L	483_T	0.670	0.91
294_V	369_V	0.669	0.91
238_T	442_Q	0.665	0.90
276_N	313_N	0.665	0.90
151_V	186_T	0.662	0.90
77_I	484_P	0.662	0.90
128_V	136_I	0.662	0.90
301_R	435_S	0.660	0.90
352_N	359_D	0.659	0.90
417_K	426_K	0.659	0.90
211_A	446_I	0.657	0.90
213_H	437_H	0.656	0.90
123_V	126_F	0.651	0.89
166_K	187_M	0.651	0.89
239_E	445_E	0.651	0.89
469_L	472_L	0.649	0.89
478_G	481_V	0.648	0.89
91_V	204_L	0.647	0.89
310_A	353_Y	0.646	0.89
445_E	449_S	0.645	0.89
147_L	150_K	0.645	0.89
210_N	244_K	0.645	0.89
283_M	312_R	0.644	0.89
212_G	300_A	0.644	0.89
280_D	283_M	0.643	0.89
196_G	207_S	0.643	0.89
99_I	142_Y	0.643	0.89
73_Y	93_N	0.641	0.89
405_I	410_R	0.640	0.88
108_E	405_I	0.638	0.88
154_T	216_G	0.636	0.88
332_L	341_P	0.635	0.88
424_L	429_L	0.635	0.88
281_K	285_V	0.634	0.88
308_V	312_R	0.634	0.88
100_L	229_I	0.634	0.88
99_I	126_F	0.632	0.88
310_A	318_V	0.631	0.88
265_K	465_N	0.631	0.88
81_G	89_I	0.629	0.88
253_D	450_V	0.629	0.88
463_P	483_T	0.629	0.88
264_G	472_L	0.627	0.87
155_V	334_F	0.625	0.87
281_K	431_I	0.623	0.87
237_L	446_I	0.623	0.87
437_H	460_H	0.623	0.87
411_K	416_G	0.621	0.87
278_F	434_F	0.619	0.87
139_L	151_V	0.618	0.87
247_E	250_N	0.618	0.87
270_N	441_R	0.617	0.87
201_I	287_E	0.617	0.87
325_R	354_V	0.615	0.86
229_I	256_V	0.614	0.86
211_A	251_I	0.613	0.86
156_A	215_P	0.612	0.86
96_G	125_G	0.611	0.86
246_A	251_I	0.610	0.86
302_S	328_T	0.610	0.86
289_G	366_E	0.610	0.86
240_T	243_M	0.608	0.86
204_L	222_V	0.607	0.86
135_H	213_H	0.607	0.86
266_F	439_G	0.606	0.86
467_S	471_D	0.605	0.86
469_L	473_I	0.604	0.85
305_V	371_V	0.603	0.85
373_S	378_K	0.603	0.85
143_Q	165_L	0.602	0.85
235_I	438_A	0.600	0.85
132_H	260_E	0.600	0.85
359_D	363_A	0.597	0.85
131_A	136_I	0.597	0.85
75_L	457_V	0.597	0.85
77_I	81_G	0.595	0.85
91_V	258_V	0.592	0.84
126_F	151_V	0.592	0.84
456_V	479_V	0.591	0.84
360_R	368_G	0.591	0.84
424_L	428_R	0.590	0.84
379_G	407_T	0.590	0.84
229_I	258_V	0.587	0.84
321_D	357_W	0.586	0.84
156_A	334_F	0.585	0.84
261_S	458_L	0.585	0.84
365_K	368_G	0.585	0.84
389_L	394_K	0.584	0.84
231_F	258_V	0.583	0.83
213_H	460_H	0.583	0.83
136_I	299_L	0.583	0.83
97_S	119_M	0.582	0.83
333_G	336_E	0.582	0.83
130_H	460_H	0.580	0.83
135_H	262_T	0.579	0.83
77_I	89_I	0.578	0.83
443_L	469_L	0.578	0.83
325_R	356_G	0.577	0.83
201_I	206_V	0.575	0.83
426_K	429_L	0.575	0.83
210_N	217_S	0.575	0.83
139_L	152_Y	0.575	0.83
202_D	225_E	0.575	0.83
307_S	310_A	0.575	0.83
132_H	234_D	0.573	0.82
126_F	147_L	0.573	0.82
162_E	188_D	0.572	0.82
279_Y	283_M	0.572	0.82
83_E	105_N	0.572	0.82
325_R	353_Y	0.570	0.82
277_D	430_E	0.568	0.82
96_G	204_L	0.568	0.82
138_A	141_I	0.567	0.82
279_Y	304_E	0.567	0.82
262_T	437_H	0.564	0.81
458_L	470_A	0.560	0.81
102_Y	126_F	0.560	0.81
187_M	190_F	0.559	0.81
391_E	424_L	0.557	0.81
301_R	436_S	0.557	0.81
127_V	202_D	0.556	0.80
98_I	206_V	0.556	0.80
285_V	292_V	0.556	0.80
133_L	323_M	0.556	0.80
484_P	488_Q	0.555	0.80
440_R	444_L	0.554	0.80
291_T	365_K	0.553	0.80
274_V	308_V	0.553	0.80
253_D	454_E	0.553	0.80
86_R	403_Q	0.551	0.80
253_D	452_D	0.551	0.80
358_E	361_H	0.550	0.80
271_R	441_R	0.550	0.80
139_L	165_L	0.549	0.80
89_I	231_F	0.549	0.80
305_V	309_L	0.549	0.80
426_K	430_E	0.548	0.80
228_V	253_D	0.547	0.79
233_G	262_T	0.547	0.79
281_K	284_E	0.547	0.79
283_M	313_N	0.547	0.79
163_T	166_K	0.546	0.79
232_T	262_T	0.546	0.79
442_Q	445_E	0.545	0.79
319_Y	368_G	0.545	0.79
300_A	331_M	0.544	0.79
466_E	469_L	0.544	0.79
387_K	422_S	0.544	0.79
381_P	385_Y	0.540	0.79
260_E	437_H	0.539	0.78
378_K	407_T	0.538	0.78
86_R	402_Y	0.538	0.78
289_G	292_V	0.537	0.78
135_H	437_H	0.537	0.78
341_P	353_Y	0.536	0.78
115_P	119_M	0.536	0.78
285_V	290_G	0.536	0.78
272_K	434_F	0.536	0.78
189_N	192_A	0.535	0.78
360_R	385_Y	0.535	0.78
132_H	262_T	0.534	0.78
454_E	480_E	0.534	0.78
234_D	437_H	0.533	0.78
457_V	484_P	0.532	0.78
332_L	352_N	0.530	0.77
341_P	352_N	0.530	0.77
135_H	297_F	0.528	0.77
390_S	395_N	0.528	0.77
328_T	332_L	0.528	0.77
209_Y	251_I	0.527	0.77
219_I	257_L	0.525	0.77
221_K	252_G	0.524	0.76
387_K	419_D	0.523	0.76
364_W	368_G	0.522	0.76
306_L	310_A	0.520	0.76
141_I	144_I	0.517	0.76
171_L	188_D	0.517	0.76
99_I	102_Y	0.517	0.76
77_I	457_V	0.517	0.76
201_I	204_L	0.516	0.75
321_D	370_I	0.516	0.75
143_Q	147_L	0.515	0.75
193_I	218_S	0.515	0.75
88_A	138_A	0.512	0.75
155_V	159_I	0.511	0.75
213_H	301_R	0.510	0.75
379_G	383_V	0.509	0.74
153_G	157_T	0.507	0.74
207_S	252_G	0.506	0.74
373_S	381_P	0.506	0.74
427_A	430_E	0.505	0.74
78_L	117_Q	0.503	0.74
150_K	189_N	0.503	0.74
386_F	390_S	0.502	0.73
157_T	193_I	0.502	0.73
132_H	233_G	0.500	0.73

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ycbA	2	0.9959	100	0.326	Contact Map
3af5A	1	0.9959	100	0.335	Contact Map
2xr1A	2	0.9858	100	0.337	Contact Map
2i7tA	1	0.7744	100	0.365	Contact Map
3iekA	3	0.8394	100	0.37	Contact Map
3bk2A	2	0.7927	100	0.417	Contact Map
3zq4A	3	0.7907	100	0.421	Contact Map
2i7xA	1	0.8354	100	0.449	Contact Map
2az4A	1	0.7724	100	0.515	Contact Map
5ahoA	1	0.6179	100	0.589	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0122 seconds.