GCH3 - SULSO - GREMLIN Contacts

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GCH3 - GTP cyclohydrolase III

UniProt:	Q980B6	Sequences: MKILAIKLLDYREWTERLGYDREWLIQKIQNKFMMKIHEIASQYNTFPLQLRFDNFLMIADGITTTQLAYMINDMQENLPVRIKSCLGYGKTPLEAQWNASICLNNQDDNEIKEYTDEKIAALHFDINFNTETLKYTSVYDSFIEITNIYVNLSRFLYKIGGILQYLGGDNYLGFISTESVNKVIEEFSDDNKIKVGIGIGKNARTAIRLATTSLEKIRNNREKTWHMEEE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	231 (222)
Sequences:	110 (73)
Seq/√Len:	4.9

HALSA - GCH31 GCH32
SULSO - GCH3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
128_N	195_K	9.568	1.00
40_I	71_M	4.727	0.96
40_I	86_C	3.672	0.85
83_I	128_N	3.330	0.78
133_T	146_I	3.173	0.74
4_L	60_A	3.161	0.74
50_Q	53_F	3.117	0.73
129_F	193_K	2.754	0.63
148_N	155_R	2.726	0.62
138_S	141_D	2.724	0.62
201_G	206_T	2.714	0.62
71_M	86_C	2.467	0.54
138_S	158_Y	2.285	0.48
12_R	166_Y	2.252	0.47
13_E	166_Y	2.149	0.44
12_R	26_I	2.095	0.42
26_I	166_Y	2.066	0.41
13_E	26_I	2.018	0.40
90_G	99_N	2.015	0.39
48_P	68_L	2.007	0.39
92_T	200_I	1.991	0.39
39_E	150_Y	1.952	0.38
63_I	183_K	1.942	0.37
161_G	195_K	1.939	0.37
125_F	208_I	1.921	0.37
24_W	86_C	1.854	0.35
218_I	222_R	1.847	0.34
33_F	120_I	1.846	0.34
92_T	162_G	1.821	0.34
24_W	40_I	1.790	0.33
21_D	205_R	1.760	0.32
6_I	220_N	1.718	0.31
3_I	183_K	1.712	0.31
24_W	71_M	1.706	0.30
125_F	196_V	1.676	0.30
122_A	164_L	1.650	0.29
141_D	158_Y	1.637	0.29
16_E	26_I	1.631	0.28
7_K	84_K	1.623	0.28
56_F	214_S	1.622	0.28
34_M	38_H	1.566	0.27
32_K	73_N	1.564	0.27
21_D	222_R	1.557	0.27
91_K	190_D	1.547	0.26
6_I	83_I	1.537	0.26
138_S	164_L	1.514	0.26
193_K	200_I	1.482	0.25
73_N	133_T	1.467	0.24
60_A	68_L	1.462	0.24
63_I	90_G	1.430	0.24
16_E	166_Y	1.425	0.23
75_M	87_L	1.406	0.23
150_Y	185_I	1.397	0.23
68_L	194_I	1.392	0.23
63_I	67_Q	1.389	0.23
180_S	188_F	1.363	0.22
34_M	139_V	1.360	0.22
4_L	58_M	1.353	0.22
115_Y	155_R	1.352	0.22
47_F	208_I	1.351	0.22
69_A	146_I	1.334	0.21
34_M	113_K	1.328	0.21
15_T	52_R	1.327	0.21
50_Q	144_I	1.309	0.21
72_I	194_I	1.287	0.20
39_E	163_I	1.268	0.20
12_R	16_E	1.254	0.20
13_E	16_E	1.252	0.20
83_I	202_K	1.233	0.19
24_W	195_K	1.231	0.19
47_F	173_L	1.229	0.19
53_F	161_G	1.226	0.19
195_K	205_R	1.223	0.19
58_M	165_Q	1.222	0.19
32_K	42_S	1.218	0.19
13_E	49_L	1.214	0.19
4_L	68_L	1.202	0.19
24_W	205_R	1.187	0.18
120_I	139_V	1.178	0.18
10_D	33_F	1.173	0.18
8_L	121_A	1.171	0.18
5_A	75_M	1.171	0.18
2_K	61_D	1.167	0.18
147_T	151_V	1.156	0.18
6_I	58_M	1.153	0.18
58_M	68_L	1.148	0.18
145_E	201_G	1.141	0.17
18_L	212_T	1.140	0.17
72_I	166_Y	1.134	0.17
65_T	186_E	1.132	0.17
10_D	216_E	1.130	0.17
31_N	61_D	1.127	0.17
2_K	165_Q	1.126	0.17
116_T	136_Y	1.125	0.17
24_W	162_G	1.117	0.17
149_I	175_F	1.112	0.17
164_L	172_Y	1.102	0.17
31_N	57_L	1.086	0.16
146_I	151_V	1.085	0.16
10_D	74_D	1.084	0.16
114_E	202_K	1.078	0.16
112_I	117_D	1.070	0.16
20_Y	58_M	1.065	0.16
101_S	105_N	1.058	0.16
75_M	157_L	1.054	0.16
60_A	194_I	1.051	0.16
69_A	116_T	1.040	0.16
86_C	223_E	1.033	0.16
10_D	101_S	1.033	0.16
38_H	136_Y	1.027	0.15
66_T	155_R	1.024	0.15
3_I	92_T	1.020	0.15
36_K	135_K	1.010	0.15
37_I	58_M	1.002	0.15
66_T	210_L	1.000	0.15
118_E	179_E	0.998	0.15
15_T	219_R	0.991	0.15
52_R	219_R	0.991	0.15
52_R	215_L	0.991	0.15
15_T	215_L	0.991	0.15
37_I	101_S	0.985	0.15
215_L	219_R	0.983	0.15
66_T	104_L	0.978	0.15
41_A	173_L	0.974	0.15
67_Q	95_E	0.973	0.15
37_I	75_M	0.966	0.14
6_I	185_I	0.956	0.14
46_T	63_I	0.950	0.14
71_M	162_G	0.949	0.14
155_R	186_E	0.946	0.14
152_N	162_G	0.943	0.14
118_E	146_I	0.939	0.14
205_R	222_R	0.938	0.14
21_D	42_S	0.927	0.14
53_F	121_A	0.922	0.14
2_K	5_A	0.918	0.14
88_G	114_E	0.918	0.14
212_T	216_E	0.917	0.14
19_G	205_R	0.915	0.14
140_Y	144_I	0.911	0.14
86_C	146_I	0.902	0.13
112_I	220_N	0.895	0.13
88_G	191_D	0.894	0.13
29_I	121_A	0.893	0.13
24_W	38_H	0.882	0.13
87_L	113_K	0.881	0.13
41_A	58_M	0.874	0.13
217_K	220_N	0.873	0.13
9_L	77_E	0.860	0.13
37_I	48_P	0.855	0.13
162_G	176_I	0.854	0.13
95_E	103_C	0.851	0.13
17_R	74_D	0.850	0.13
24_W	34_M	0.847	0.13
70_Y	144_I	0.846	0.13
118_E	136_Y	0.845	0.13
125_F	150_Y	0.842	0.13
49_L	72_I	0.841	0.13
155_R	164_L	0.827	0.12
106_N	183_K	0.824	0.12
46_T	203_N	0.824	0.12
2_K	17_R	0.823	0.12
2_K	68_L	0.820	0.12
5_A	180_S	0.818	0.12
12_R	72_I	0.814	0.12
92_T	117_D	0.814	0.12
42_S	123_L	0.807	0.12
144_I	154_S	0.805	0.12
3_I	71_M	0.804	0.12
174_G	221_N	0.799	0.12
110_N	114_E	0.794	0.12
8_L	29_I	0.780	0.12
120_I	162_G	0.779	0.12
110_N	179_E	0.779	0.12
142_S	148_N	0.778	0.12
148_N	185_I	0.773	0.12
29_I	166_Y	0.767	0.12
125_F	185_I	0.765	0.12
40_I	205_R	0.748	0.11
2_K	58_M	0.745	0.11
101_S	182_N	0.743	0.11
4_L	165_Q	0.740	0.11
47_F	212_T	0.737	0.11
61_D	165_Q	0.735	0.11
6_I	156_F	0.731	0.11
41_A	142_S	0.722	0.11
2_K	60_A	0.718	0.11
98_W	179_E	0.716	0.11
65_T	91_K	0.713	0.11
136_Y	182_N	0.707	0.11
191_D	204_A	0.707	0.11
106_N	180_S	0.701	0.11
6_I	140_Y	0.701	0.11
110_N	222_R	0.698	0.11
13_E	29_I	0.696	0.11
31_N	128_N	0.695	0.11
162_G	195_K	0.695	0.11
88_G	106_N	0.692	0.11
115_Y	151_V	0.692	0.11
88_G	220_N	0.681	0.10
41_A	200_I	0.680	0.10
43_Q	145_E	0.680	0.10
55_N	123_L	0.677	0.10
210_L	218_I	0.676	0.10
38_H	191_D	0.675	0.10
163_I	185_I	0.674	0.10
97_Q	218_I	0.672	0.10
65_T	180_S	0.668	0.10
156_F	159_K	0.668	0.10
71_M	183_K	0.667	0.10
55_N	216_E	0.666	0.10
132_E	139_V	0.664	0.10
31_N	122_A	0.660	0.10
24_W	161_G	0.658	0.10
117_D	202_K	0.645	0.10
110_N	190_D	0.645	0.10
13_E	79_L	0.644	0.10
90_G	102_I	0.640	0.10
29_I	49_L	0.637	0.10
18_L	21_D	0.637	0.10
47_F	188_F	0.637	0.10
121_A	163_I	0.634	0.10
66_T	132_E	0.631	0.10
18_L	82_R	0.624	0.10
63_I	181_V	0.622	0.10
108_D	216_E	0.620	0.10
49_L	166_Y	0.619	0.10
141_D	144_I	0.614	0.10
106_N	190_D	0.613	0.10
57_L	129_F	0.612	0.10
72_I	216_E	0.611	0.10
9_L	55_N	0.609	0.10
83_I	161_G	0.604	0.10
12_R	49_L	0.594	0.09
17_R	59_I	0.585	0.09
96_A	199_G	0.584	0.09
28_K	144_I	0.583	0.09
25_L	77_E	0.582	0.09
91_K	198_I	0.577	0.09
2_K	166_Y	0.576	0.09
28_K	140_Y	0.575	0.09
74_D	121_A	0.572	0.09
195_K	218_I	0.569	0.09
55_N	153_L	0.566	0.09
144_I	164_L	0.565	0.09
26_I	49_L	0.563	0.09
12_R	93_P	0.557	0.09
13_E	72_I	0.554	0.09
79_L	216_E	0.550	0.09
2_K	48_P	0.546	0.09
105_N	139_V	0.546	0.09
46_T	93_P	0.542	0.09
48_P	194_I	0.542	0.09
152_N	161_G	0.539	0.09
18_L	216_E	0.539	0.09
180_S	201_G	0.537	0.09
38_H	71_M	0.537	0.09
122_A	145_E	0.537	0.09
112_I	118_E	0.536	0.09
111_E	122_A	0.535	0.09
62_G	205_R	0.534	0.09
208_I	218_I	0.534	0.09
8_L	194_I	0.531	0.09
12_R	29_I	0.530	0.09
31_N	34_M	0.527	0.09
103_C	158_Y	0.525	0.09
63_I	92_T	0.525	0.09
42_S	62_G	0.525	0.09
104_L	202_K	0.522	0.09
37_I	41_A	0.520	0.09
184_V	188_F	0.517	0.09
92_T	159_K	0.512	0.09
115_Y	185_I	0.510	0.09
60_A	201_G	0.510	0.09
129_F	156_F	0.505	0.09
42_S	213_T	0.502	0.09
126_D	197_G	0.500	0.09
54_D	169_G	0.500	0.09
54_D	170_D	0.500	0.09
30_Q	54_D	0.500	0.09
54_D	171_N	0.500	0.09
54_D	197_G	0.500	0.09
54_D	211_A	0.500	0.09
30_Q	168_G	0.500	0.09
30_Q	126_D	0.500	0.09
30_Q	124_H	0.500	0.09
11_Y	27_Q	0.500	0.09
30_Q	169_G	0.500	0.09
197_G	211_A	0.500	0.09
30_Q	211_A	0.500	0.09
30_Q	197_G	0.500	0.09
30_Q	171_N	0.500	0.09
54_D	124_H	0.500	0.09
54_D	126_D	0.500	0.09
171_N	211_A	0.500	0.09
171_N	197_G	0.500	0.09
170_D	211_A	0.500	0.09
170_D	197_G	0.500	0.09
169_G	211_A	0.500	0.09
169_G	197_G	0.500	0.09
168_G	211_A	0.500	0.09
168_G	197_G	0.500	0.09
168_G	171_N	0.500	0.09
11_Y	124_H	0.500	0.09
23_E	27_Q	0.500	0.09
14_W	54_D	0.500	0.09
124_H	168_G	0.500	0.09
124_H	169_G	0.500	0.09
124_H	170_D	0.500	0.09
124_H	171_N	0.500	0.09
124_H	197_G	0.500	0.09
124_H	211_A	0.500	0.09
23_E	197_G	0.500	0.09
23_E	171_N	0.500	0.09
23_E	170_D	0.500	0.09
14_W	124_H	0.500	0.09
23_E	30_Q	0.500	0.09
23_E	124_H	0.500	0.09
14_W	211_A	0.500	0.09
14_W	197_G	0.500	0.09
23_E	168_G	0.500	0.09
23_E	169_G	0.500	0.09
14_W	171_N	0.500	0.09
14_W	126_D	0.500	0.09
23_E	211_A	0.500	0.09
14_W	23_E	0.500	0.09
27_Q	169_G	0.500	0.09
27_Q	170_D	0.500	0.09
11_Y	171_N	0.500	0.09
11_Y	169_G	0.500	0.09
27_Q	171_N	0.500	0.09
11_Y	168_G	0.500	0.09
27_Q	197_G	0.500	0.09

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2qv6A	4	0.9957	100	0.132	Contact Map
3mtkA	2	0.632	97.3	0.921	Contact Map
3i5cA	2	0.7316	97	0.925	Contact Map
3hvaA	1	0.6017	96.9	0.926	Contact Map
3x1lA	1	0.7446	96.9	0.927	Contact Map
4uw2A	1	0.7446	96.8	0.928	Contact Map
4w8yA	1	0.8139	96.6	0.929	Contact Map
3pjxA	1	0.6883	96.6	0.929	Contact Map
4urgA	1	0.5844	96.5	0.93	Contact Map
3hvwA	1	0.5541	96.3	0.931	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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