Q97ZZ7 - SULSO - GREMLIN Contacts

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Q97ZZ7 - Uncharacterized protein

UniProt:	Q97ZZ7	Sequences: MVKKFMLIALVHLRLKELSRKHNLEKAKKLIRQAKDKGAKLVILPSLFPSGNMFEIYDNDKKLRSFIKNLAEKIPGNNTDTLINLAMDGEVHVIVGPILEQAGPKIFLTSLIISPQGEIIGKYRKTVLSEKDIRLGISAGKEPVNVVLDRKYGIIAEDDIFSPEISRLLAMGGSEIVIGTMKALGKEQQVIKHLAIARTIENGIPYLIVGESIEDEEGEIIGYSPTFITSPDNLISKEAEEDDSLLFVESSILSSSKQTSLTYLEPIINGLCKGVKKIKGEAKKRSASTMEEE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	293 (252)
Sequences:	13749 (9433)
Seq/√Len:	594.2

ECOLI - YBEM YAFV YOBB
BACSU - MTNU YHCX
HALSA - Q9HQZ3
SULSO - Q97ZZ7 Q97WN8 Q981B6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
7_L	249_E	3.219	1.00
147_V	151_K	2.925	1.00
19_S	22_H	2.443	1.00
228_I	248_V	2.439	1.00
100_E	124_R	2.432	1.00
26_K	243_D	2.375	1.00
230_S	234_L	2.343	1.00
9_A	247_F	2.327	1.00
27_A	48_F	2.314	1.00
98_I	111_L	2.271	1.00
192_K	238_E	2.152	1.00
9_A	39_A	2.150	1.00
153_G	169_L	2.127	1.00
198_R	201_E	2.126	1.00
28_K	81_T	2.115	1.00
155_I	166_S	2.106	1.00
240_E	244_S	2.071	1.00
10_L	207_L	2.058	1.00
28_K	85_L	2.025	1.00
32_R	89_G	2.023	1.00
109_T	124_R	2.018	1.00
10_L	209_V	1.981	1.00
92_H	115_P	1.936	1.00
37_K	247_F	1.935	1.00
43_I	178_I	1.934	1.00
32_R	88_D	1.930	1.00
42_V	91_V	1.903	1.00
8_I	207_L	1.898	1.00
175_E	256_S	1.839	1.00
26_K	29_K	1.796	1.00
239_A	246_L	1.789	1.00
107_F	124_R	1.778	1.00
193_H	196_I	1.768	1.00
239_A	244_S	1.753	1.00
83_I	113_I	1.733	1.00
28_K	32_R	1.731	1.00
177_V	204_I	1.691	1.00
92_H	112_I	1.670	1.00
40_K	149_D	1.648	1.00
33_Q	37_K	1.648	1.00
110_S	154_I	1.638	1.00
205_P	231_P	1.637	1.00
151_K	175_E	1.634	1.00
86_A	93_V	1.616	1.00
229_T	235_I	1.593	1.00
114_S	120_I	1.587	1.00
94_I	112_I	1.586	1.00
84_N	88_D	1.579	1.00
39_A	247_F	1.578	1.00
115_P	149_D	1.558	1.00
105_K	138_S	1.556	1.00
100_E	109_T	1.551	1.00
16_K	22_H	1.548	1.00
237_K	246_L	1.541	1.00
112_I	154_I	1.540	1.00
152_Y	176_I	1.527	1.00
29_K	33_Q	1.524	1.00
94_I	178_I	1.524	1.00
11_V	42_V	1.523	1.00
82_L	95_V	1.521	1.00
195_A	208_I	1.513	1.00
109_T	122_K	1.504	1.00
92_H	148_L	1.494	1.00
43_I	209_V	1.491	1.00
32_R	85_L	1.483	1.00
94_I	110_S	1.479	1.00
31_I	42_V	1.476	1.00
41_L	178_I	1.475	1.00
132_D	135_L	1.470	1.00
207_L	228_I	1.457	1.00
31_I	93_V	1.422	1.00
30_L	33_Q	1.421	1.00
27_A	44_L	1.420	1.00
114_S	118_E	1.420	1.00
192_K	196_I	1.411	1.00
254_S	257_K	1.402	1.00
92_H	120_I	1.398	1.00
155_I	179_G	1.388	1.00
79_T	111_L	1.380	1.00
25_E	29_K	1.362	1.00
205_P	236_S	1.345	1.00
130_E	134_R	1.337	1.00
75_P	79_T	1.327	1.00
24_L	81_T	1.325	1.00
166_S	177_V	1.307	1.00
22_H	25_E	1.295	1.00
113_I	119_I	1.287	1.00
110_S	180_T	1.282	1.00
85_L	89_G	1.271	1.00
155_I	165_I	1.270	1.00
11_V	44_L	1.265	1.00
230_S	236_S	1.257	1.00
214_E	221_I	1.254	1.00
94_I	154_I	1.246	1.00
225_P	238_E	1.238	1.00
34_A	245_L	1.238	1.00
80_D	83_I	1.238	1.00
152_Y	178_I	1.235	1.00
25_E	81_T	1.232	1.00
31_I	85_L	1.224	1.00
11_V	245_L	1.221	1.00
98_I	122_K	1.216	1.00
72_E	76_G	1.197	1.00
31_I	91_V	1.194	1.00
168_L	172_G	1.191	1.00
164_E	167_R	1.190	1.00
21_K	25_E	1.185	1.00
40_K	115_P	1.170	1.00
176_I	207_L	1.162	1.00
121_G	144_V	1.162	1.00
193_H	200_I	1.153	1.00
80_D	84_N	1.152	1.00
66_F	69_N	1.152	1.00
257_K	260_S	1.144	1.00
28_K	88_D	1.139	1.00
22_H	26_K	1.139	1.00
79_T	113_I	1.123	1.00
26_K	30_L	1.121	1.00
49_P	78_N	1.109	1.00
166_S	179_G	1.106	1.00
230_S	254_S	1.104	1.00
100_E	122_K	1.099	1.00
192_K	227_F	1.087	1.00
13_L	30_L	1.079	1.00
111_L	122_K	1.078	1.00
90_E	115_P	1.078	1.00
11_V	30_L	1.069	1.00
24_L	28_K	1.051	1.00
30_L	245_L	1.049	1.00
16_K	19_S	1.048	1.00
81_T	85_L	1.045	1.00
225_P	241_E	1.037	1.00
195_A	229_T	1.034	1.00
73_K	101_Q	1.028	1.00
7_L	247_F	1.028	1.00
199_T	206_Y	1.028	1.00
92_H	149_D	1.026	1.00
33_Q	36_D	1.021	1.00
174_S	177_V	1.019	1.00
39_A	42_V	1.018	1.00
81_T	84_N	1.017	1.00
92_H	114_S	0.999	1.00
123_Y	144_V	0.998	1.00
107_F	138_S	0.992	1.00
211_E	215_D	0.982	1.00
195_A	206_Y	0.981	1.00
82_L	93_V	0.977	1.00
84_N	87_M	0.968	1.00
13_L	27_A	0.965	1.00
28_K	84_N	0.959	1.00
112_I	146_V	0.956	1.00
164_E	267_I	0.955	1.00
12_H	226_T	0.950	1.00
158_D	162_S	0.947	1.00
158_D	266_P	0.946	1.00
95_V	113_I	0.942	1.00
21_K	77_N	0.940	1.00
188_Q	225_P	0.938	1.00
170_A	204_I	0.937	1.00
121_G	146_V	0.932	1.00
10_L	228_I	0.930	1.00
72_E	78_N	0.927	1.00
153_G	174_S	0.924	1.00
85_L	88_D	0.923	1.00
7_L	37_K	0.917	1.00
167_R	202_N	0.915	1.00
195_A	227_F	0.915	1.00
175_E	252_I	0.914	1.00
10_L	246_L	0.913	1.00
148_L	152_Y	0.911	1.00
145_N	151_K	0.911	1.00
18_L	22_H	0.907	1.00
32_R	36_D	0.907	1.00
35_K	91_V	0.906	1.00
212_S	242_D	0.902	1.00
27_A	82_L	0.901	1.00
145_N	174_S	0.895	1.00
235_I	238_E	0.888	1.00
205_P	255_S	0.886	1.00
189_Q	196_I	0.886	1.00
237_K	248_V	0.884	1.00
199_T	229_T	0.878	1.00
227_F	235_I	0.877	1.00
193_H	197_A	0.871	1.00
79_T	119_I	0.863	1.00
251_S	254_S	0.855	1.00
189_Q	192_K	0.852	1.00
126_T	165_I	0.846	1.00
20_R	24_L	0.845	1.00
76_G	79_T	0.842	1.00
253_L	257_K	0.839	1.00
253_L	256_S	0.837	1.00
191_I	208_I	0.834	1.00
47_L	99_L	0.831	1.00
147_V	150_R	0.830	1.00
236_S	248_V	0.829	1.00
205_P	250_S	0.828	1.00
102_A	124_R	0.827	1.00
34_A	39_A	0.827	1.00
67_I	70_L	0.824	1.00
9_A	245_L	0.817	1.00
123_Y	159_D	0.812	1.00
21_K	81_T	0.812	1.00
102_A	105_K	0.809	1.00
29_K	32_R	0.809	1.00
255_S	259_T	0.801	1.00
167_R	171_M	0.798	1.00
15_L	211_E	0.793	1.00
35_K	89_G	0.790	1.00
14_R	212_S	0.785	1.00
13_L	48_F	0.783	1.00
111_L	119_I	0.778	1.00
31_I	89_G	0.777	1.00
100_E	107_F	0.777	1.00
171_M	267_I	0.769	1.00
37_K	245_L	0.767	1.00
14_R	243_D	0.767	1.00
36_D	89_G	0.760	1.00
125_K	157_E	0.759	1.00
126_T	143_P	0.758	1.00
76_G	80_D	0.758	1.00
79_T	83_I	0.757	1.00
50_S	75_P	0.755	1.00
8_I	250_S	0.753	1.00
262_T	265_E	0.752	1.00
64_R	70_L	0.748	1.00
146_V	152_Y	0.748	1.00
252_I	256_S	0.746	1.00
205_P	254_S	0.741	1.00
101_Q	106_I	0.734	1.00
27_A	95_V	0.734	1.00
24_L	82_L	0.732	1.00
9_A	34_A	0.730	1.00
31_I	44_L	0.726	1.00
25_E	28_K	0.723	1.00
155_I	169_L	0.723	1.00
68_K	101_Q	0.720	1.00
179_G	206_Y	0.720	1.00
169_L	174_S	0.716	1.00
212_S	243_D	0.713	1.00
27_A	31_I	0.711	1.00
83_I	118_E	0.710	1.00
44_L	48_F	0.710	1.00
254_S	258_Q	0.709	1.00
78_N	81_T	0.709	1.00
232_D	258_Q	0.706	1.00
64_R	71_A	0.698	1.00
160_I	179_G	0.697	1.00
114_S	149_D	0.692	1.00
234_L	254_S	0.690	1.00
34_A	42_V	0.689	1.00
10_L	226_T	0.687	1.00
177_V	206_Y	0.686	1.00
47_L	52_N	0.686	1.00
6_M	250_S	0.683	1.00
41_L	94_I	0.682	1.00
16_K	23_N	0.680	1.00
20_R	72_E	0.679	1.00
13_L	26_K	0.679	1.00
41_L	92_H	0.676	1.00
9_A	42_V	0.675	1.00
47_L	137_I	0.673	1.00
83_I	86_A	0.672	1.00
170_A	202_N	0.671	1.00
43_I	207_L	0.669	1.00
127_V	159_D	0.669	1.00
160_I	195_A	0.665	1.00
12_H	224_S	0.662	1.00
43_I	94_I	0.661	1.00
83_I	119_I	0.658	1.00
64_R	68_K	0.655	1.00
77_N	80_D	0.651	1.00
143_P	165_I	0.651	1.00
182_K	211_E	0.649	1.00
65_S	69_N	0.647	1.00
68_K	71_A	0.642	1.00
108_L	125_K	0.638	1.00
48_F	95_V	0.635	1.00
170_A	264_L	0.631	1.00
74_I	111_L	0.630	1.00
127_V	162_S	0.629	1.00
227_F	238_E	0.629	1.00
74_I	79_T	0.629	1.00
112_I	152_Y	0.628	1.00
75_P	98_I	0.624	1.00
16_K	26_K	0.621	1.00
86_A	89_G	0.617	1.00
24_L	78_N	0.615	1.00
119_I	122_K	0.614	1.00
108_L	157_E	0.606	1.00
185_G	221_I	0.604	1.00
79_T	95_V	0.604	1.00
196_I	235_I	0.600	1.00
183_A	187_E	0.596	1.00
6_M	41_L	0.591	1.00
34_A	91_V	0.588	1.00
189_Q	193_H	0.587	1.00
192_K	225_P	0.587	1.00
65_S	68_K	0.586	1.00
20_R	78_N	0.585	1.00
33_Q	245_L	0.584	1.00
102_A	107_F	0.584	1.00
108_L	156_A	0.581	1.00
34_A	38_G	0.578	1.00
112_I	148_L	0.576	1.00
192_K	229_T	0.575	1.00
198_R	202_N	0.572	1.00
188_Q	223_Y	0.569	1.00
144_V	172_G	0.568	1.00
66_F	70_L	0.564	1.00
168_L	171_M	0.564	1.00
210_G	223_Y	0.562	1.00
10_L	237_K	0.560	1.00
50_S	99_L	0.558	0.99
145_N	172_G	0.558	0.99
121_G	154_I	0.557	0.99
14_R	26_K	0.554	0.99
14_R	211_E	0.553	0.99
21_K	24_L	0.553	0.99
39_A	91_V	0.552	0.99
161_F	194_L	0.551	0.99
28_K	89_G	0.550	0.99
211_E	222_G	0.548	0.99
129_S	161_F	0.548	0.99
123_Y	140_G	0.548	0.99
129_S	158_D	0.547	0.99
24_L	85_L	0.544	0.99
143_P	169_L	0.544	0.99
150_R	175_E	0.543	0.99
153_G	177_V	0.543	0.99
75_P	80_D	0.541	0.99
196_I	229_T	0.541	0.99
40_K	90_E	0.540	0.99
165_I	169_L	0.537	0.99
114_S	121_G	0.537	0.99
100_E	111_L	0.535	0.99
92_H	152_Y	0.534	0.99
151_K	172_G	0.533	0.99
183_A	191_I	0.531	0.99
52_N	137_I	0.531	0.99
64_R	69_N	0.530	0.99
169_L	177_V	0.530	0.99
49_P	82_L	0.530	0.99
82_L	85_L	0.529	0.99
24_L	49_P	0.528	0.99
126_T	168_L	0.527	0.99
194_L	197_A	0.526	0.99
192_K	235_I	0.526	0.99
210_G	226_T	0.526	0.99
6_M	249_E	0.525	0.99
96_G	108_L	0.523	0.99
255_S	258_Q	0.523	0.99
32_R	35_K	0.518	0.99
99_L	137_I	0.518	0.99
203_G	258_Q	0.517	0.99
161_F	183_A	0.515	0.99
41_L	112_I	0.515	0.99
176_I	205_P	0.515	0.99
49_P	95_V	0.513	0.99
182_K	222_G	0.512	0.99
252_I	255_S	0.512	0.99
68_K	72_E	0.511	0.99
190_V	232_D	0.510	0.99
7_L	40_K	0.509	0.99
90_E	116_Q	0.509	0.99
52_N	157_E	0.507	0.99
44_L	93_V	0.507	0.99
175_E	255_S	0.506	0.99
160_I	194_L	0.506	0.99
23_N	27_A	0.504	0.99
197_A	200_I	0.503	0.99
6_M	40_K	0.503	0.99
158_D	161_F	0.502	0.99
94_I	180_T	0.502	0.99
214_E	219_E	0.501	0.99
30_L	243_D	0.501	0.99
142_E	145_N	0.501	0.99
64_R	72_E	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4izuA	2	0.8532	100	0.225	Contact Map
3p8kA	2	0.8908	100	0.23	Contact Map
2vhhA	5	0.9761	100	0.232	Contact Map
2w1vA	2	0.8976	100	0.238	Contact Map
1emsA	3	0.9556	100	0.244	Contact Map
3ivzA	2	0.8669	100	0.244	Contact Map
1f89A	2	0.8737	100	0.251	Contact Map
1uf5A	4	0.9215	100	0.251	Contact Map
3wuyA	2	0.8942	100	0.263	Contact Map
2dyuA	5	0.942	100	0.269	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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