Q97ZZ5 - SULSO - GREMLIN Contacts

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Q97ZZ5 - Uncharacterized protein

UniProt:	Q97ZZ5	Sequences: MSSELLEETISRVSKFASIFGISKSELKVYSYLLIYGRATAREVSNKLSLPYTKVYNVLSKLEGRGWVIKIDKRPAVYEAIPLRDVWNKIKITFQEKLDEFEKQFIEPISSIFSSNMAYNIVVIPRDNIMDNALRLLKDYSKMYLVAISYQEFVRSDIIDILRANSLKAETKIIVDKSVNLPDISSAQVKRAQSLFGSGIITSDSILLVIKNNDILTGLFSNHKYLIDIGTVYFNHLWSTLPG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	243 (222)
Sequences:	2208 (1829)
Seq/√Len:	122.8

BACSU - YRHO
HALSA - Q9HNY8 TRMBR
SULSO - Q97ZZ5 Q7LYK2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
26_E	61_K	3.516	1.00
140_Y	202_T	3.448	1.00
26_E	65_R	3.412	1.00
33_L	68_V	3.050	1.00
25_S	51_P	2.865	1.00
54_K	57_N	2.815	1.00
30_Y	34_L	2.795	1.00
140_Y	144_Y	2.714	1.00
157_D	161_I	2.596	1.00
143_M	204_D	2.546	1.00
25_S	54_K	2.479	1.00
67_W	86_V	2.449	1.00
172_K	235_N	2.447	1.00
158_I	161_I	2.387	1.00
23_S	61_K	2.307	1.00
59_L	68_V	2.299	1.00
36_Y	39_A	2.289	1.00
59_L	78_Y	2.253	1.00
40_T	43_E	2.241	1.00
147_A	237_L	2.231	1.00
145_L	204_D	2.149	1.00
23_S	26_E	2.139	1.00
135_R	139_D	2.061	1.00
136_L	206_I	1.995	1.00
29_V	55_V	1.983	1.00
129_I	218_G	1.889	1.00
30_Y	83_L	1.875	1.00
69_I	79_E	1.839	1.00
24_K	28_K	1.834	1.00
25_S	48_L	1.810	1.00
83_L	113_F	1.798	1.00
29_V	58_V	1.794	1.00
158_I	162_L	1.774	1.00
32_Y	47_K	1.774	1.00
29_V	44_V	1.729	1.00
95_Q	99_D	1.721	1.00
109_I	113_F	1.690	1.00
144_Y	202_T	1.685	1.00
25_S	50_L	1.673	1.00
170_E	188_Q	1.662	1.00
42_R	46_N	1.661	1.00
51_P	54_K	1.647	1.00
180_N	191_R	1.646	1.00
190_K	238_W	1.588	1.00
174_I	237_L	1.587	1.00
204_D	231_T	1.587	1.00
136_L	208_L	1.576	1.00
89_K	93_T	1.568	1.00
22_I	67_W	1.566	1.00
145_L	231_T	1.550	1.00
163_R	166_S	1.545	1.00
164_A	167_L	1.542	1.00
137_L	144_Y	1.536	1.00
224_K	228_D	1.481	1.00
231_T	235_N	1.462	1.00
132_N	220_F	1.451	1.00
63_E	70_K	1.443	1.00
38_R	77_V	1.431	1.00
29_V	50_L	1.417	1.00
27_L	31_S	1.412	1.00
160_D	164_A	1.400	1.00
146_V	200_I	1.392	1.00
94_F	97_K	1.390	1.00
44_V	55_V	1.383	1.00
159_I	162_L	1.377	1.00
147_A	174_I	1.373	1.00
35_I	47_K	1.365	1.00
157_D	164_A	1.363	1.00
52_Y	56_Y	1.350	1.00
25_S	58_V	1.333	1.00
132_N	135_R	1.329	1.00
51_P	58_V	1.318	1.00
124_I	220_F	1.311	1.00
18_S	24_K	1.283	1.00
39_A	47_K	1.280	1.00
25_S	57_N	1.278	1.00
96_E	100_E	1.251	1.00
36_Y	47_K	1.249	0.99
172_K	238_W	1.233	0.99
175_V	189_V	1.226	0.99
201_I	231_T	1.219	0.99
108_P	111_S	1.217	0.99
137_L	202_T	1.215	0.99
86_V	91_K	1.214	0.99
48_L	55_V	1.204	0.99
150_Y	176_D	1.201	0.99
147_A	195_L	1.193	0.99
67_W	90_I	1.190	0.99
146_V	173_I	1.162	0.99
55_V	68_V	1.139	0.99
122_V	132_N	1.138	0.99
147_A	196_F	1.129	0.99
32_Y	48_L	1.119	0.99
43_E	46_N	1.119	0.99
32_Y	44_V	1.115	0.99
137_L	171_T	1.111	0.99
122_V	222_N	1.094	0.99
65_R	93_T	1.092	0.99
158_I	164_A	1.087	0.99
205_S	222_N	1.083	0.99
96_E	99_D	1.080	0.99
45_S	68_V	1.077	0.98
71_I	79_E	1.076	0.98
141_S	205_S	1.072	0.98
159_I	164_A	1.064	0.98
195_L	198_S	1.042	0.98
187_A	198_S	1.021	0.98
34_L	83_L	1.021	0.98
41_A	52_Y	1.021	0.98
91_K	101_F	1.013	0.98
35_I	112_I	0.995	0.97
159_I	163_R	0.983	0.97
112_I	116_N	0.982	0.97
50_L	55_V	0.982	0.97
25_S	29_V	0.975	0.97
187_A	191_R	0.973	0.97
161_I	164_A	0.972	0.97
145_L	201_I	0.969	0.97
42_R	53_T	0.966	0.97
144_Y	171_T	0.963	0.97
145_L	235_N	0.961	0.97
227_I	231_T	0.943	0.97
41_A	56_Y	0.942	0.96
26_E	58_V	0.937	0.96
84_R	110_S	0.932	0.96
87_W	90_I	0.924	0.96
105_F	110_S	0.922	0.96
60_S	64_G	0.921	0.96
129_I	217_T	0.920	0.96
95_Q	103_K	0.920	0.96
94_F	98_L	0.902	0.96
121_I	226_L	0.901	0.95
147_A	233_Y	0.897	0.95
70_K	76_A	0.894	0.95
33_L	59_L	0.894	0.95
103_K	107_E	0.893	0.95
120_N	222_N	0.889	0.95
140_Y	203_S	0.884	0.95
177_K	191_R	0.883	0.95
66_G	126_R	0.876	0.95
103_K	112_I	0.876	0.95
17_A	27_L	0.874	0.95
192_A	237_L	0.868	0.94
133_A	137_L	0.866	0.94
219_L	226_L	0.861	0.94
87_W	94_F	0.861	0.94
53_T	57_N	0.850	0.94
31_S	112_I	0.846	0.94
18_S	27_L	0.835	0.93
51_P	55_V	0.827	0.93
70_K	75_P	0.822	0.93
197_G	229_I	0.821	0.93
151_Q	198_S	0.818	0.93
40_T	78_Y	0.812	0.92
132_N	136_L	0.811	0.92
48_L	58_V	0.810	0.92
142_K	170_E	0.808	0.92
172_K	190_K	0.806	0.92
106_I	113_F	0.803	0.92
201_I	207_L	0.803	0.92
234_F	238_W	0.803	0.92
124_I	128_N	0.801	0.92
122_V	220_F	0.800	0.92
136_L	202_T	0.798	0.92
111_S	114_S	0.792	0.91
177_K	193_Q	0.791	0.91
181_L	196_F	0.786	0.91
133_A	198_S	0.771	0.90
82_P	110_S	0.770	0.90
223_H	228_D	0.769	0.90
201_I	227_I	0.769	0.90
55_V	155_R	0.766	0.90
221_S	230_G	0.764	0.90
30_Y	81_I	0.762	0.90
31_S	35_I	0.761	0.90
91_K	94_F	0.760	0.90
206_I	222_N	0.760	0.90
63_E	68_V	0.759	0.89
32_Y	39_A	0.757	0.89
19_I	97_K	0.755	0.89
45_S	55_V	0.753	0.89
40_T	77_V	0.751	0.89
150_Y	198_S	0.750	0.89
133_A	149_S	0.746	0.89
110_S	113_F	0.745	0.89
137_L	187_A	0.744	0.88
90_I	94_F	0.744	0.88
147_A	199_G	0.743	0.88
177_K	180_N	0.740	0.88
50_L	56_Y	0.727	0.87
99_D	151_Q	0.726	0.87
61_K	64_G	0.725	0.87
114_S	118_A	0.723	0.87
135_R	202_T	0.722	0.87
229_I	233_Y	0.714	0.86
120_N	223_H	0.712	0.86
181_L	215_I	0.706	0.86
41_A	78_Y	0.705	0.86
92_I	117_M	0.698	0.85
22_I	27_L	0.696	0.85
105_F	111_S	0.691	0.85
46_N	52_Y	0.691	0.85
140_Y	164_A	0.688	0.84
65_R	136_L	0.681	0.84
219_L	223_H	0.680	0.84
55_V	233_Y	0.679	0.84
32_Y	35_I	0.676	0.83
77_V	208_L	0.674	0.83
156_S	161_I	0.673	0.83
145_L	172_K	0.672	0.83
133_A	200_I	0.666	0.82
163_R	167_L	0.665	0.82
182_P	185_S	0.662	0.82
148_I	151_Q	0.661	0.82
128_N	151_Q	0.660	0.82
40_T	56_Y	0.658	0.82
33_L	44_V	0.658	0.82
97_K	101_F	0.653	0.81
139_D	206_I	0.649	0.81
136_L	220_F	0.647	0.80
68_V	78_Y	0.643	0.80
131_D	134_L	0.641	0.80
146_V	171_T	0.640	0.80
31_S	34_L	0.639	0.80
36_Y	213_N	0.639	0.80
154_V	164_A	0.639	0.80
185_S	201_I	0.636	0.79
134_L	138_K	0.634	0.79
104_Q	108_P	0.634	0.79
86_V	123_V	0.632	0.79
43_E	98_L	0.631	0.79
147_A	223_H	0.629	0.79
100_E	152_E	0.626	0.78
165_N	171_T	0.625	0.78
156_S	160_D	0.623	0.78
186_S	190_K	0.623	0.78
93_T	97_K	0.616	0.77
74_R	131_D	0.615	0.77
168_K	203_S	0.612	0.77
131_D	135_R	0.612	0.77
149_S	189_V	0.606	0.76
175_V	187_A	0.605	0.76
49_S	73_K	0.605	0.76
107_E	206_I	0.605	0.76
38_R	138_K	0.603	0.76
224_K	227_I	0.603	0.76
188_Q	191_R	0.602	0.76
143_M	203_S	0.602	0.76
85_D	100_E	0.599	0.75
188_Q	192_A	0.598	0.75
60_S	201_I	0.597	0.75
130_M	137_L	0.595	0.75
44_V	48_L	0.594	0.75
51_P	57_N	0.593	0.74
151_Q	187_A	0.592	0.74
27_L	56_Y	0.590	0.74
33_L	78_Y	0.590	0.74
42_R	45_S	0.589	0.74
90_I	201_I	0.589	0.74
189_V	192_A	0.588	0.74
210_I	215_I	0.587	0.74
34_L	80_A	0.587	0.74
173_I	187_A	0.586	0.74
149_S	198_S	0.586	0.74
69_I	81_I	0.585	0.73
41_A	59_L	0.580	0.73
29_V	83_L	0.580	0.73
45_S	52_Y	0.578	0.73
107_E	170_E	0.578	0.73
166_S	205_S	0.574	0.72
145_L	223_H	0.574	0.72
105_F	113_F	0.573	0.72
40_T	52_Y	0.572	0.72
33_L	41_A	0.571	0.72
135_R	138_K	0.569	0.71
80_A	174_I	0.568	0.71
94_F	101_F	0.568	0.71
60_S	76_A	0.565	0.71
165_N	175_V	0.564	0.71
119_Y	223_H	0.563	0.71
57_N	60_S	0.561	0.70
124_I	132_N	0.557	0.70
20_F	94_F	0.557	0.70
124_I	218_G	0.555	0.70
49_S	85_D	0.555	0.70
81_I	85_D	0.554	0.69
208_L	220_F	0.554	0.69
154_V	181_L	0.552	0.69
29_V	68_V	0.552	0.69
85_D	114_S	0.549	0.69
148_I	198_S	0.547	0.68
107_E	110_S	0.545	0.68
44_V	94_F	0.544	0.68
54_K	58_V	0.543	0.68
206_I	220_F	0.543	0.68
171_T	187_A	0.543	0.68
45_S	53_T	0.541	0.68
112_I	118_A	0.540	0.67
69_I	223_H	0.540	0.67
25_S	28_K	0.540	0.67
22_I	144_Y	0.538	0.67
158_I	183_D	0.537	0.67
36_Y	92_I	0.533	0.66
60_S	63_E	0.532	0.66
78_Y	144_Y	0.531	0.66
232_V	236_H	0.530	0.66
147_A	229_I	0.527	0.66
138_K	142_K	0.526	0.65
132_N	218_G	0.525	0.65
83_L	87_W	0.524	0.65
43_E	47_K	0.524	0.65
191_R	194_S	0.524	0.65
110_S	239_S	0.524	0.65
111_S	115_S	0.524	0.65
52_Y	217_T	0.523	0.65
92_I	96_E	0.521	0.65
105_F	109_I	0.521	0.65
85_D	210_I	0.519	0.64
107_E	212_N	0.519	0.64
39_A	46_N	0.518	0.64
50_L	54_K	0.517	0.64
133_A	208_L	0.516	0.64
181_L	186_S	0.516	0.64
51_P	121_I	0.515	0.64
230_G	233_Y	0.515	0.64
31_S	108_P	0.514	0.64
169_A	203_S	0.512	0.63
221_S	227_I	0.510	0.63
80_A	220_F	0.503	0.62
25_S	41_A	0.503	0.62
48_L	56_Y	0.503	0.62
91_K	95_Q	0.500	0.62
117_M	151_Q	0.500	0.62

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qphA	2	0.9095	100	0.394	Contact Map
1byrA	2	0.5226	99	0.773	Contact Map
2f5tX	2	0.4897	98.9	0.781	Contact Map
4ggjA	2	0.6091	98.8	0.791	Contact Map
1sfxA	3	0.428	98.6	0.804	Contact Map
3r0aA	2	0.4609	98.5	0.811	Contact Map
4nb5A	4	0.5802	98.4	0.814	Contact Map
1qgpA	1	0.2963	98.4	0.816	Contact Map
3pqkA	2	0.4156	98.4	0.816	Contact Map
1q1hA	1	0.3333	98.4	0.818	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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