Q97ZZ1 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97ZZ1 - Oxidoreductase

UniProt:	Q97ZZ1	Sequences: MLFVYLNSHNYHLYFYYLKCNDNNGRYYMLYRRIGDTNITVSEIGIGVWSLVTDWWGADTNKAEDIIRRAYEVGINFYDTADTYGEGKGEEIIAKVLETKRDNIVILTKIGYDFYHKEGGKIRQRFDIPYLEFALKRSLERLRTDYIDILMIHNPKMNAIKNLEILSFLRSLKKDGIIRMYGVALGPTLGWEEEGIEAINMGYESLEYIYNIIEQRPGNKFLKYEKVGHIIRVPHASDVLNEDKWPLISDPKLHRSLKDIKWLNEGIKRSLKLKEFASSKGMTLSDLALKFILSNKNVSTVIPNITSINELEKYVKVENLSILTEDDLKYIGEYYRKYYEDLNEDSIKETLRYK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	354 (299)
Sequences:	23870 (15438)
Seq/√Len:	892.8

ECOLI - YDJG YAJO GPR TAS YDHF YEAE YDBC DKGA DKGB
BACSU - GS69 IOLS YRPG YQKF YCCK YCSN YTBE GR
HALSA - Q9HNN3 Q9HPH9 Q9HQU7 Q9HSE6 Q9HS02 Q9HQT1
SULSO - Q97ZZ1 Q97UG6 Q97UJ7 Q97UV9 Q97V56 Q97U17

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
69_R	312_E	3.570	1.00
60_T	95_K	3.370	1.00
98_E	143_R	3.062	1.00
136_K	177_I	3.012	1.00
280_K	327_D	2.934	1.00
69_R	73_V	2.579	1.00
33_R	40_T	2.573	1.00
324_T	327_D	2.568	1.00
279_S	330_Y	2.556	1.00
132_E	175_D	2.534	1.00
135_L	172_L	2.519	1.00
170_R	174_K	2.451	1.00
132_E	171_S	2.357	1.00
274_K	278_S	2.234	1.00
32_R	43_E	2.232	1.00
88_K	91_E	2.188	1.00
146_Y	179_R	2.123	1.00
45_G	77_F	2.041	1.00
151_M	205_S	2.017	1.00
128_I	171_S	2.008	1.00
325_E	329_K	1.999	1.00
294_S	328_L	1.971	1.00
108_T	147_I	1.963	1.00
100_K	103_N	1.940	1.00
59_D	62_K	1.940	1.00
64_E	99_T	1.926	1.00
73_V	312_E	1.903	1.00
272_K	275_E	1.891	1.00
279_S	327_D	1.891	1.00
171_S	174_K	1.867	1.00
110_I	131_L	1.867	1.00
221_F	225_E	1.826	1.00
275_E	330_Y	1.815	1.00
316_K	319_N	1.800	1.00
171_S	175_D	1.799	1.00
73_V	315_V	1.777	1.00
151_M	230_I	1.762	1.00
48_V	78_Y	1.759	1.00
69_R	308_I	1.743	1.00
329_K	333_E	1.737	1.00
128_I	132_E	1.735	1.00
282_M	320_L	1.705	1.00
290_K	320_L	1.696	1.00
135_L	150_L	1.694	1.00
70_A	75_I	1.692	1.00
64_E	95_K	1.687	1.00
107_L	151_M	1.686	1.00
31_Y	40_T	1.681	1.00
64_E	96_V	1.664	1.00
110_I	150_L	1.654	1.00
133_F	137_R	1.646	1.00
91_E	141_R	1.626	1.00
30_L	43_E	1.618	1.00
283_T	313_K	1.613	1.00
168_F	171_S	1.601	1.00
222_L	229_H	1.599	1.00
60_T	64_E	1.590	1.00
106_I	144_T	1.584	1.00
64_E	68_R	1.579	1.00
67_I	96_V	1.579	1.00
135_L	147_I	1.576	1.00
137_R	141_R	1.559	1.00
308_I	312_E	1.559	1.00
108_T	138_S	1.559	1.00
178_I	181_Y	1.555	1.00
187_P	190_G	1.540	1.00
62_K	65_D	1.539	1.00
82_D	134_A	1.514	1.00
282_M	286_D	1.489	1.00
132_E	136_K	1.451	1.00
195_G	198_A	1.444	1.00
223_K	296_K	1.438	1.00
330_Y	333_E	1.430	1.00
39_I	105_V	1.418	1.00
147_I	178_I	1.413	1.00
71_Y	104_I	1.407	1.00
155_P	190_G	1.390	1.00
69_R	72_E	1.370	1.00
188_T	221_F	1.367	1.00
137_R	140_E	1.367	1.00
283_T	286_D	1.358	1.00
295_N	332_G	1.358	1.00
282_M	287_L	1.351	1.00
132_E	168_F	1.347	1.00
172_L	178_I	1.346	1.00
272_K	330_Y	1.333	1.00
152_I	169_L	1.331	1.00
33_R	38_N	1.321	1.00
78_Y	93_I	1.313	1.00
39_I	180_M	1.309	1.00
196_I	200_N	1.309	1.00
275_E	279_S	1.306	1.00
76_N	105_V	1.299	1.00
223_K	297_N	1.294	1.00
95_K	143_R	1.286	1.00
217_P	229_H	1.286	1.00
209_I	214_E	1.276	1.00
128_I	167_S	1.275	1.00
250_D	254_H	1.273	1.00
193_E	197_E	1.271	1.00
215_Q	218_G	1.268	1.00
68_R	99_T	1.257	1.00
312_E	316_K	1.248	1.00
271_L	274_K	1.246	1.00
228_G	300_T	1.241	1.00
68_R	72_E	1.235	1.00
66_I	311_L	1.234	1.00
309_N	312_E	1.233	1.00
91_E	95_K	1.229	1.00
94_A	143_R	1.225	1.00
101_R	144_T	1.221	1.00
290_K	294_S	1.220	1.00
274_K	284_L	1.220	1.00
105_V	149_I	1.211	1.00
245_W	274_K	1.199	1.00
193_E	196_I	1.195	1.00
275_E	278_S	1.194	1.00
65_D	308_I	1.183	1.00
136_K	140_E	1.177	1.00
212_I	331_I	1.166	1.00
82_D	130_Y	1.166	1.00
180_M	204_E	1.161	1.00
169_L	181_Y	1.158	1.00
208_Y	229_H	1.158	1.00
61_N	65_D	1.156	1.00
77_F	107_L	1.153	1.00
67_I	78_Y	1.151	1.00
48_V	93_I	1.143	1.00
149_I	205_S	1.140	1.00
43_E	293_L	1.130	1.00
90_E	138_S	1.129	1.00
292_I	301_V	1.127	1.00
113_D	125_R	1.125	1.00
181_Y	203_Y	1.120	1.00
286_D	316_K	1.111	1.00
276_F	287_L	1.103	1.00
68_R	96_V	1.100	1.00
220_K	224_Y	1.099	1.00
91_E	140_E	1.094	1.00
129_P	133_F	1.093	1.00
65_D	69_R	1.092	1.00
183_V	203_Y	1.090	1.00
101_R	146_Y	1.089	1.00
30_L	321_S	1.084	1.00
286_D	313_K	1.081	1.00
212_I	288_A	1.081	1.00
167_S	171_S	1.077	1.00
136_K	175_D	1.064	1.00
210_Y	218_G	1.055	1.00
191_W	227_V	1.050	1.00
271_L	275_E	1.049	1.00
128_I	168_F	1.048	1.00
305_I	311_L	1.046	1.00
73_V	316_K	1.042	1.00
223_K	298_V	1.041	1.00
254_H	258_K	1.040	1.00
43_E	318_E	1.034	1.00
42_S	76_N	1.032	1.00
132_E	135_L	1.031	1.00
97_L	104_I	1.028	1.00
42_S	75_I	1.023	1.00
142_L	147_I	1.020	1.00
37_T	204_E	1.020	1.00
194_E	197_E	1.018	1.00
128_I	164_E	1.015	1.00
77_F	230_I	1.009	1.00
172_L	177_I	1.008	1.00
273_L	284_L	1.005	1.00
210_Y	295_N	0.994	1.00
185_L	232_R	0.988	1.00
305_I	310_E	0.987	1.00
170_R	173_K	0.986	1.00
326_D	329_K	0.981	1.00
264_N	268_K	0.981	1.00
295_N	328_L	0.979	1.00
132_E	172_L	0.966	1.00
130_Y	133_F	0.965	1.00
172_L	175_D	0.965	1.00
311_L	315_V	0.956	1.00
62_K	308_I	0.955	1.00
173_K	204_E	0.954	1.00
183_V	191_W	0.953	1.00
71_Y	100_K	0.952	1.00
228_G	299_S	0.949	1.00
245_W	271_L	0.948	1.00
31_Y	76_N	0.944	1.00
148_D	179_R	0.944	1.00
205_S	230_I	0.942	1.00
329_K	332_G	0.938	1.00
167_S	170_R	0.937	1.00
164_E	167_S	0.930	1.00
46_I	70_A	0.930	1.00
48_V	89_G	0.927	1.00
293_L	317_V	0.927	1.00
168_F	172_L	0.923	1.00
246_P	271_L	0.923	1.00
253_L	256_S	0.909	1.00
254_H	257_L	0.908	1.00
251_P	255_R	0.904	1.00
60_T	88_K	0.900	1.00
231_I	301_V	0.900	1.00
154_N	185_L	0.893	1.00
126_F	152_I	0.891	1.00
194_E	198_A	0.888	1.00
45_G	300_T	0.887	1.00
193_E	224_Y	0.883	1.00
313_K	316_K	0.882	1.00
134_A	137_R	0.878	1.00
131_L	172_L	0.874	1.00
272_K	334_Y	0.867	1.00
75_I	315_V	0.863	1.00
67_I	93_I	0.860	1.00
306_T	310_E	0.858	1.00
107_L	149_I	0.857	1.00
250_D	253_L	0.855	1.00
309_N	313_K	0.855	1.00
60_T	92_I	0.851	1.00
196_I	199_I	0.851	1.00
326_D	330_Y	0.838	1.00
294_S	325_E	0.838	1.00
65_D	68_R	0.836	1.00
80_T	93_I	0.835	1.00
268_K	271_L	0.833	1.00
173_K	201_M	0.833	1.00
45_G	303_P	0.828	1.00
323_L	328_L	0.825	1.00
267_I	271_L	0.822	1.00
195_G	199_I	0.822	1.00
165_I	168_F	0.820	1.00
234_P	303_P	0.818	1.00
71_Y	103_N	0.818	1.00
46_I	51_L	0.817	1.00
68_R	100_K	0.816	1.00
268_K	272_K	0.812	1.00
133_F	136_K	0.811	1.00
197_E	201_M	0.807	1.00
37_T	180_M	0.806	1.00
212_I	335_Y	0.800	1.00
183_V	186_G	0.800	1.00
125_R	130_Y	0.799	1.00
102_D	146_Y	0.795	1.00
307_S	310_E	0.791	1.00
139_L	177_I	0.789	1.00
44_I	293_L	0.787	1.00
276_F	280_K	0.786	1.00
127_D	130_Y	0.783	1.00
252_K	255_R	0.781	1.00
63_A	92_I	0.777	1.00
67_I	71_Y	0.776	1.00
220_K	223_K	0.776	1.00
51_L	63_A	0.774	1.00
193_E	225_E	0.773	1.00
252_K	256_S	0.771	1.00
36_D	226_K	0.770	1.00
61_N	64_E	0.765	1.00
285_S	313_K	0.763	1.00
100_K	104_I	0.762	1.00
278_S	281_G	0.760	1.00
41_V	77_F	0.760	1.00
51_L	66_I	0.755	1.00
166_L	181_Y	0.752	1.00
261_K	264_N	0.752	1.00
221_F	224_Y	0.748	1.00
82_D	141_R	0.748	1.00
222_L	227_V	0.747	1.00
213_I	239_V	0.747	1.00
294_S	321_S	0.746	1.00
206_L	222_L	0.745	1.00
251_P	256_S	0.744	1.00
276_F	327_D	0.744	1.00
198_A	202_G	0.744	1.00
280_K	324_T	0.744	1.00
173_K	178_I	0.742	1.00
170_R	201_M	0.740	1.00
251_P	254_H	0.733	1.00
197_E	200_N	0.733	1.00
166_L	203_Y	0.733	1.00
162_N	165_I	0.728	1.00
239_V	270_S	0.725	1.00
66_I	308_I	0.723	1.00
287_L	331_I	0.721	1.00
95_K	99_T	0.720	1.00
277_A	287_L	0.713	1.00
230_I	300_T	0.709	1.00
276_F	334_Y	0.708	1.00
169_L	173_K	0.708	1.00
183_V	206_L	0.708	1.00
231_I	234_P	0.708	1.00
82_D	137_R	0.706	1.00
289_L	317_V	0.704	1.00
210_Y	292_I	0.704	1.00
118_E	123_R	0.703	1.00
287_L	320_L	0.700	1.00
79_D	207_E	0.698	1.00
270_S	274_K	0.697	1.00
151_M	182_G	0.696	1.00
250_D	255_R	0.695	1.00
80_T	89_G	0.689	1.00
70_A	78_Y	0.689	1.00
173_K	181_Y	0.686	1.00
88_K	92_I	0.683	1.00
34_I	228_G	0.682	1.00
155_P	186_G	0.681	1.00
276_F	330_Y	0.678	1.00
245_W	248_I	0.676	1.00
110_I	126_F	0.674	1.00
71_Y	78_Y	0.671	1.00
198_A	201_M	0.668	1.00
231_I	298_V	0.663	1.00
90_E	141_R	0.659	1.00
30_L	319_N	0.659	1.00
282_M	290_K	0.659	1.00
279_S	324_T	0.659	1.00
71_Y	76_N	0.658	1.00
267_I	270_S	0.658	1.00
135_L	168_F	0.657	1.00
31_Y	42_S	0.650	1.00
52_V	89_G	0.648	1.00
152_I	165_I	0.647	1.00
135_L	177_I	0.647	1.00
110_I	134_A	0.646	1.00
273_L	331_I	0.645	1.00
250_D	256_S	0.643	1.00
97_L	100_K	0.643	1.00
45_G	302_I	0.642	1.00
214_E	217_P	0.641	1.00
310_E	313_K	0.640	1.00
287_L	323_L	0.640	1.00
78_Y	97_L	0.640	1.00
273_L	288_A	0.638	1.00
290_K	317_V	0.637	1.00
87_G	141_R	0.635	1.00
196_I	225_E	0.634	1.00
234_P	292_I	0.634	1.00
107_L	230_I	0.634	1.00
193_E	221_F	0.634	1.00
49_W	233_V	0.633	1.00
282_M	316_K	0.633	1.00
138_S	150_L	0.633	1.00
126_F	165_I	0.631	1.00
280_K	287_L	0.630	1.00
293_L	301_V	0.629	1.00
323_L	327_D	0.629	1.00
113_D	124_Q	0.629	1.00
131_L	165_I	0.628	1.00
132_E	177_I	0.625	1.00
90_E	108_T	0.624	1.00
170_R	181_Y	0.623	1.00
253_L	258_K	0.623	1.00
149_I	182_G	0.621	1.00
288_A	292_I	0.621	1.00
182_G	205_S	0.619	1.00
130_Y	134_A	0.618	1.00
135_L	139_L	0.609	1.00
139_L	145_D	0.607	1.00
246_P	249_S	0.606	1.00
66_I	305_I	0.605	1.00
112_Y	154_N	0.604	1.00
42_S	77_F	0.603	1.00
150_L	178_I	0.603	1.00
253_L	257_L	0.599	1.00
58_A	63_A	0.596	1.00
327_D	330_Y	0.595	1.00
265_E	268_K	0.595	1.00
246_P	264_N	0.594	1.00
147_I	150_L	0.593	1.00
239_V	266_G	0.593	1.00
195_G	202_G	0.591	1.00
156_K	159_A	0.591	1.00
96_V	99_T	0.590	1.00
195_G	225_E	0.589	1.00
109_K	153_H	0.589	1.00
234_P	289_L	0.588	1.00
263_L	266_G	0.588	1.00
77_F	105_V	0.586	1.00
41_V	300_T	0.586	1.00
289_L	314_Y	0.584	1.00
83_T	112_Y	0.583	1.00
162_N	197_E	0.580	1.00
71_Y	96_V	0.579	1.00
260_I	263_L	0.578	1.00
157_M	190_G	0.577	1.00
35_G	41_V	0.575	1.00
260_I	264_N	0.575	1.00
199_I	202_G	0.574	1.00
67_I	97_L	0.574	1.00
44_I	303_P	0.571	1.00
170_R	200_N	0.570	1.00
97_L	106_I	0.568	1.00
186_G	191_W	0.567	1.00
139_L	144_T	0.566	1.00
287_L	327_D	0.565	1.00
210_Y	215_Q	0.565	1.00
286_D	320_L	0.563	1.00
252_K	258_K	0.562	1.00
195_G	201_M	0.555	1.00
291_F	332_G	0.555	1.00
85_G	88_K	0.553	1.00
289_L	303_P	0.552	1.00
174_K	200_N	0.551	1.00
64_E	92_I	0.550	1.00
308_I	311_L	0.546	1.00
91_E	143_R	0.546	1.00
73_V	311_L	0.544	1.00
78_Y	104_I	0.542	1.00
196_I	202_G	0.542	1.00
108_T	153_H	0.541	1.00
45_G	230_I	0.540	1.00
255_R	258_K	0.537	1.00
191_W	206_L	0.536	1.00
246_P	267_I	0.535	1.00
34_I	205_S	0.534	1.00
189_L	224_Y	0.533	1.00
305_I	314_Y	0.533	1.00
118_E	121_K	0.531	1.00
62_K	309_N	0.530	1.00
131_L	168_F	0.530	1.00
264_N	267_I	0.529	1.00
231_I	292_I	0.528	1.00
175_D	178_I	0.528	1.00
191_W	222_L	0.527	1.00
215_Q	332_G	0.527	1.00
70_A	311_L	0.525	1.00
113_D	123_R	0.525	1.00
41_V	105_V	0.525	1.00
303_P	314_Y	0.520	1.00
263_L	267_I	0.520	1.00
208_Y	217_P	0.519	1.00
48_V	80_T	0.519	1.00
282_M	319_N	0.519	1.00
163_L	167_S	0.518	1.00
44_I	317_V	0.518	1.00
59_D	63_A	0.517	1.00
36_D	204_E	0.516	1.00
246_P	268_K	0.516	1.00
214_E	335_Y	0.513	1.00
58_A	62_K	0.513	1.00
101_R	148_D	0.510	1.00
139_L	147_I	0.508	1.00
290_K	321_S	0.508	1.00
152_I	186_G	0.505	1.00
163_L	194_E	0.505	1.00
81_A	153_H	0.503	1.00
251_P	257_L	0.503	1.00
139_L	146_Y	0.502	1.00
233_V	237_S	0.500	1.00
53_T	88_K	0.500	1.00
46_I	66_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1pyfA	1	0.8503	100	0.233	Contact Map
4xk2A	5	0.8588	100	0.233	Contact Map
3v0sA	1	0.7599	100	0.236	Contact Map
3eauA	3	0.8616	100	0.24	Contact Map
1pz1A	1	0.8983	100	0.242	Contact Map
3n2tA	1	0.8927	100	0.242	Contact Map
1lqaA	2	0.8757	100	0.247	Contact Map
3lutA	3	0.8616	100	0.248	Contact Map
3n6qA	5	0.8559	100	0.249	Contact Map
3erpA	6	0.8418	100	0.255	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0111 seconds.