Q97ZY2 - SULSO - GREMLIN Contacts

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Q97ZY2 - Uncharacterized protein

UniProt:	Q97ZY2	Sequences: MGEGIATLAIEEQLQQISLKLLDETRVLYEFLSNTSNSNVNAMQIYSKVNGIKNDIEVSKYRLGEYIFKIREGLLDKDLYVEILNNLEKVSQNLDAATYRLSVILSKQMNIDNVINRLLIVICEKIITSITYFIEALRLLSVNPKNSYENARNVIKLEQEIDELYRSLELALFEKKLADFSYIMLLKDIADRLEDSEDLLKSSADNITYIAYERM	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	215 (190)
Sequences:	1401 (1016)
Seq/√Len:	73.7

BACSU - YKAA
SULSO - Q97ZY2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
153_N	156_K	3.945	1.00
161_I	197_E	3.707	1.00
53_K	57_E	3.149	1.00
63_L	84_L	3.067	1.00
20_K	56_I	3.035	1.00
56_I	91_S	2.804	1.00
20_K	55_D	2.767	1.00
49_V	98_T	2.667	1.00
51_G	54_N	2.620	1.00
57_E	88_E	2.608	1.00
158_E	198_D	2.607	1.00
105_L	174_E	2.567	1.00
53_K	88_E	2.351	1.00
23_D	55_D	2.351	1.00
24_E	91_S	2.307	1.00
125_K	160_E	2.301	1.00
158_E	162_D	2.215	1.00
160_E	163_E	2.082	1.00
16_Q	62_R	2.036	1.00
41_N	44_Q	2.028	1.00
162_D	198_D	1.948	1.00
171_A	175_K	1.926	1.00
134_I	137_L	1.807	1.00
47_S	51_G	1.805	1.00
27_V	48_K	1.766	1.00
155_I	201_K	1.761	1.00
48_K	51_G	1.759	1.00
61_Y	152_R	1.735	1.00
15_Q	138_R	1.725	1.00
154_V	204_A	1.687	1.00
33_S	120_I	1.642	1.00
61_Y	155_I	1.641	1.00
29_Y	124_E	1.557	0.99
71_R	76_D	1.553	0.99
99_Y	166_R	1.537	0.99
22_L	131_T	1.495	0.99
90_V	130_I	1.486	0.99
25_T	94_L	1.466	0.99
133_F	207_I	1.456	0.99
118_L	171_A	1.453	0.99
166_R	187_K	1.450	0.99
132_Y	153_N	1.448	0.99
10_I	80_Y	1.443	0.99
20_K	52_I	1.442	0.99
51_G	55_D	1.437	0.99
20_K	23_D	1.422	0.99
53_K	92_Q	1.369	0.98
125_K	128_T	1.366	0.98
89_K	92_Q	1.359	0.98
14_L	80_Y	1.352	0.98
149_E	153_N	1.315	0.98
132_Y	135_E	1.300	0.98
146_N	149_E	1.287	0.97
67_I	80_Y	1.250	0.97
168_L	190_A	1.246	0.97
57_E	92_Q	1.243	0.97
199_L	202_S	1.235	0.97
129_S	157_L	1.234	0.97
138_R	141_S	1.215	0.96
41_N	45_I	1.214	0.96
97_A	193_L	1.212	0.96
126_I	133_F	1.202	0.96
62_R	66_Y	1.199	0.96
50_N	95_D	1.195	0.96
118_L	121_V	1.186	0.96
19_L	23_D	1.178	0.96
27_V	49_V	1.173	0.96
10_I	73_G	1.171	0.95
123_C	127_I	1.156	0.95
119_L	126_I	1.152	0.95
16_Q	19_L	1.141	0.95
186_L	190_A	1.120	0.94
35_T	101_L	1.114	0.94
126_I	193_L	1.102	0.94
123_C	136_A	1.101	0.94
104_I	185_L	1.101	0.94
90_V	203_S	1.101	0.94
194_E	198_D	1.098	0.94
126_I	136_A	1.096	0.94
27_V	45_I	1.092	0.93
88_E	92_Q	1.090	0.93
21_L	91_S	1.085	0.93
10_I	71_R	1.081	0.93
35_T	42_A	1.068	0.93
22_L	26_R	1.067	0.93
31_F	42_A	1.066	0.93
83_I	203_S	1.063	0.92
172_L	189_I	1.062	0.92
126_I	197_E	1.055	0.92
166_R	173_F	1.046	0.92
61_Y	208_T	1.044	0.92
162_D	194_E	1.044	0.92
127_I	133_F	1.041	0.92
125_K	157_L	1.034	0.91
179_D	182_Y	1.022	0.91
27_V	52_I	1.019	0.91
17_I	56_I	1.017	0.91
48_K	55_D	1.013	0.91
30_E	48_K	1.009	0.90
53_K	56_I	1.005	0.90
120_I	127_I	1.002	0.90
28_L	94_L	0.995	0.90
31_F	98_T	0.987	0.89
129_S	132_Y	0.982	0.89
127_I	137_L	0.979	0.89
153_N	157_L	0.976	0.89
152_R	159_Q	0.964	0.88
14_L	75_L	0.959	0.88
32_L	123_C	0.956	0.88
126_I	137_L	0.946	0.87
134_I	138_R	0.943	0.87
70_I	73_G	0.941	0.87
71_R	77_K	0.935	0.87
64_G	206_N	0.929	0.86
61_Y	201_K	0.928	0.86
121_V	160_E	0.921	0.86
173_F	187_K	0.921	0.86
182_Y	185_L	0.919	0.86
122_I	164_L	0.913	0.85
130_I	134_I	0.910	0.85
28_L	32_L	0.907	0.85
97_A	196_S	0.906	0.85
96_A	100_R	0.903	0.85
133_F	137_L	0.902	0.85
131_T	135_E	0.891	0.84
18_S	22_L	0.887	0.84
71_R	74_L	0.886	0.84
176_K	183_I	0.884	0.83
165_Y	191_D	0.882	0.83
17_I	84_L	0.876	0.83
165_Y	194_E	0.871	0.83
75_L	78_D	0.868	0.82
129_S	136_A	0.864	0.82
172_L	190_A	0.859	0.82
54_N	58_V	0.845	0.81
73_G	80_Y	0.836	0.80
30_E	33_S	0.835	0.80
44_Q	48_K	0.818	0.78
22_L	130_I	0.812	0.78
136_A	140_L	0.810	0.78
123_C	133_F	0.810	0.78
86_N	89_K	0.805	0.77
27_V	30_E	0.801	0.77
17_I	20_K	0.800	0.77
17_I	196_S	0.797	0.77
118_L	167_S	0.795	0.76
44_Q	47_S	0.790	0.76
23_D	33_S	0.788	0.76
55_D	147_S	0.785	0.76
71_R	80_Y	0.778	0.75
126_I	130_I	0.778	0.75
129_S	154_V	0.777	0.75
102_S	170_L	0.771	0.74
93_N	199_L	0.767	0.74
31_F	49_V	0.767	0.74
159_Q	163_E	0.765	0.74
11_E	201_K	0.764	0.74
73_G	76_D	0.763	0.73
168_L	200_L	0.762	0.73
10_I	13_Q	0.757	0.73
152_R	155_I	0.755	0.73
26_R	30_E	0.749	0.72
148_Y	151_A	0.748	0.72
52_I	55_D	0.747	0.72
164_L	168_L	0.742	0.71
34_N	41_N	0.738	0.71
123_C	130_I	0.736	0.71
120_I	126_I	0.735	0.71
152_R	201_K	0.731	0.70
103_V	195_D	0.730	0.70
93_N	195_D	0.727	0.70
123_C	126_I	0.723	0.69
71_R	75_L	0.722	0.69
23_D	30_E	0.722	0.69
127_I	136_A	0.721	0.69
124_E	127_I	0.720	0.69
132_Y	150_N	0.720	0.69
74_L	77_K	0.716	0.69
155_I	205_D	0.710	0.68
90_V	200_L	0.710	0.68
197_E	209_Y	0.706	0.68
120_I	124_E	0.704	0.67
175_K	178_A	0.692	0.66
107_K	128_T	0.691	0.66
130_I	136_A	0.691	0.66
202_S	205_D	0.687	0.65
29_Y	33_S	0.686	0.65
125_K	136_A	0.682	0.65
26_R	131_T	0.677	0.64
70_I	75_L	0.676	0.64
71_R	194_E	0.673	0.64
66_Y	69_K	0.670	0.63
24_E	52_I	0.669	0.63
57_E	201_K	0.668	0.63
186_L	210_I	0.664	0.63
187_K	191_D	0.664	0.63
157_L	161_I	0.663	0.63
75_L	207_I	0.661	0.62
117_R	121_V	0.660	0.62
130_I	137_L	0.651	0.61
157_L	197_E	0.651	0.61
128_T	135_E	0.649	0.61
63_L	80_Y	0.649	0.61
55_D	58_V	0.648	0.61
133_F	150_N	0.645	0.61
13_Q	59_S	0.635	0.59
121_V	124_E	0.628	0.59
65_E	208_T	0.627	0.58
137_L	140_L	0.627	0.58
84_L	87_L	0.625	0.58
90_V	150_N	0.621	0.58
43_M	169_E	0.621	0.58
41_N	48_K	0.620	0.58
120_I	133_F	0.612	0.57
125_K	130_I	0.609	0.56
12_E	16_Q	0.608	0.56
21_L	24_E	0.605	0.56
203_S	206_N	0.599	0.55
88_E	158_E	0.597	0.55
172_L	186_L	0.597	0.55
128_T	131_T	0.596	0.55
52_I	98_T	0.596	0.55
42_A	210_I	0.596	0.55
46_Y	166_R	0.592	0.54
126_I	134_I	0.591	0.54
158_E	194_E	0.589	0.54
103_V	169_E	0.587	0.53
23_D	128_T	0.584	0.53
143_N	147_S	0.581	0.53
100_R	192_R	0.579	0.52
178_A	183_I	0.578	0.52
59_S	66_Y	0.576	0.52
72_E	75_L	0.576	0.52
23_D	51_G	0.575	0.52
12_E	147_S	0.575	0.52
43_M	47_S	0.575	0.52
119_L	168_L	0.573	0.52
127_I	131_T	0.573	0.52
67_I	74_L	0.569	0.51
28_L	101_L	0.566	0.51
14_L	122_I	0.565	0.51
45_I	180_F	0.564	0.51
126_I	140_L	0.562	0.50
49_V	52_I	0.560	0.50
103_V	166_R	0.559	0.50
53_K	201_K	0.559	0.50
167_S	171_A	0.559	0.50
92_Q	158_E	0.557	0.50
18_S	87_L	0.555	0.50
97_A	192_R	0.553	0.49
18_S	21_L	0.553	0.49
133_F	136_A	0.552	0.49
60_K	63_L	0.546	0.48
95_D	159_Q	0.543	0.48
60_K	84_L	0.537	0.47
50_N	54_N	0.537	0.47
49_V	94_L	0.536	0.47
106_S	204_A	0.536	0.47
191_D	195_D	0.535	0.47
57_E	74_L	0.535	0.47
132_Y	154_V	0.534	0.47
34_N	45_I	0.531	0.47
30_E	34_N	0.531	0.47
17_I	21_L	0.530	0.46
206_N	210_I	0.529	0.46
92_Q	201_K	0.527	0.46
151_A	208_T	0.527	0.46
14_L	18_S	0.524	0.46
125_K	137_L	0.523	0.46
120_I	140_L	0.523	0.46
94_L	194_E	0.519	0.45
14_L	210_I	0.518	0.45
96_A	192_R	0.516	0.45
30_E	45_I	0.514	0.44
14_L	104_I	0.513	0.44
188_D	191_D	0.511	0.44
16_Q	121_V	0.510	0.44
155_I	159_Q	0.509	0.44
33_S	117_R	0.509	0.44
135_E	138_R	0.508	0.44
61_Y	159_Q	0.507	0.44
43_M	102_S	0.504	0.43
146_N	174_E	0.502	0.43
126_I	129_S	0.501	0.43
32_L	97_A	0.500	0.43

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l39A	3	0.9488	100	0.273	Contact Map
2oltA	5	0.9581	100	0.459	Contact Map
1t72A	5	0.9349	98.5	0.797	Contact Map
2i0mA	2	0.8837	98.4	0.802	Contact Map
1xwmA	2	0.907	98.3	0.807	Contact Map
4q25A	2	0.9256	98.2	0.81	Contact Map
1sumB	2	0.9163	98.2	0.813	Contact Map
3vkgA	2	0.9116	18.8	0.94	Contact Map
4n78F	1	0.3767	15	0.943	Contact Map
3g67A	2	0.9116	12	0.945	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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