Q97ZX5 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97ZX5 - Uncharacterized protein

UniProt:	Q97ZX5	Sequences: MLLYVVIKTPNLLQFPEFIPKKVTVNILDIRVDGEKGKLLLEIRGDETSAKQVCEEPIKVSKYKFICTNYISSELLKILSQYTIMNGALTDDGIFWTLILNGYTELRELLNSLIDITKEVRVLKVVKAEKKDAITARQEQILRIALEAGFFDYPRRIGLKDLAKKLNISPSSLSEIIRRAEKNVITAYFEEREL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	194 (185)
Sequences:	1912 (1540)
Seq/√Len:	113.2

HALSA - Q9HPS7 Q9HR58 Q9HSR5 Q9HSM9 Q9HQD9 O54637 DMSR Q9HQU9
SULSO - Q97ZX5 Q97X87 Q97Y14 Q97YL7 Q97YT8 Q97UD7 Q97WR0 Q7LXI8 Q97UC0 Q97ZB6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
151_F	181_E	4.351	1.00
157_I	162_L	4.106	1.00
144_I	148_A	3.676	1.00
148_A	162_L	3.067	1.00
172_S	176_I	2.965	1.00
169_S	172_S	2.865	1.00
141_I	166_L	2.822	1.00
137_R	176_I	2.816	1.00
148_A	165_K	2.785	1.00
144_I	162_L	2.780	1.00
146_L	186_T	2.694	1.00
152_D	156_R	2.603	1.00
157_I	161_D	2.541	1.00
158_G	161_D	2.464	1.00
137_R	141_I	2.284	1.00
159_L	173_L	2.263	1.00
153_Y	174_S	2.240	1.00
79_L	83_T	2.206	1.00
137_R	140_Q	2.183	1.00
83_T	100_L	2.103	1.00
18_F	92_D	1.989	1.00
141_I	176_I	1.939	1.00
168_I	173_L	1.933	1.00
139_E	143_R	1.887	1.00
13_L	17_E	1.844	1.00
102_G	105_E	1.819	1.00
77_K	81_Q	1.799	1.00
159_L	174_S	1.729	1.00
170_P	174_S	1.721	1.00
185_I	188_Y	1.718	1.00
162_L	173_L	1.701	1.00
142_L	185_I	1.643	1.00
58_I	66_I	1.631	1.00
51_K	54_C	1.625	1.00
83_T	86_N	1.610	1.00
86_N	99_I	1.596	1.00
176_I	179_R	1.591	1.00
155_R	178_R	1.551	1.00
83_T	87_G	1.540	1.00
41_L	69_N	1.526	1.00
50_A	53_V	1.512	1.00
131_K	188_Y	1.436	1.00
141_I	162_L	1.409	1.00
182_K	186_T	1.384	1.00
58_I	61_S	1.347	1.00
150_F	155_R	1.312	1.00
161_D	164_K	1.296	0.99
105_E	108_E	1.292	0.99
148_A	157_I	1.291	0.99
157_I	165_K	1.274	0.99
60_V	65_F	1.258	0.99
175_E	179_R	1.252	0.99
146_L	151_F	1.252	0.99
141_I	168_I	1.251	0.99
176_I	183_N	1.232	0.99
149_G	156_R	1.232	0.99
153_Y	175_E	1.218	0.99
172_S	175_E	1.188	0.99
146_L	189_F	1.188	0.99
159_L	176_I	1.187	0.99
28_L	42_E	1.174	0.99
60_V	63_Y	1.168	0.99
13_L	18_F	1.135	0.99
6_V	93_G	1.132	0.99
6_V	121_R	1.128	0.99
137_R	175_E	1.125	0.99
9_T	12_L	1.121	0.98
142_L	151_F	1.117	0.98
164_K	167_N	1.109	0.98
151_F	177_I	1.098	0.98
134_I	180_A	1.098	0.98
159_L	170_P	1.096	0.98
153_Y	178_R	1.095	0.98
27_I	41_L	1.083	0.98
153_Y	171_S	1.082	0.98
108_E	111_N	1.081	0.98
113_L	118_K	1.080	0.98
171_S	175_E	1.080	0.98
12_L	15_F	1.067	0.98
58_I	63_Y	1.059	0.98
6_V	123_L	1.057	0.98
166_L	173_L	1.054	0.98
141_I	173_L	1.048	0.98
160_K	170_P	1.040	0.98
180_A	185_I	1.025	0.97
11_N	168_I	1.009	0.97
110_L	120_V	1.009	0.97
95_F	123_L	1.005	0.97
99_I	151_F	1.001	0.97
27_I	99_I	0.999	0.97
25_V	43_I	0.997	0.97
15_F	18_F	0.996	0.97
163_A	173_L	0.994	0.97
44_R	64_K	0.990	0.97
111_N	115_D	0.988	0.97
169_S	178_R	0.986	0.97
52_Q	56_E	0.979	0.96
67_C	71_I	0.976	0.96
49_S	52_Q	0.970	0.96
9_T	15_F	0.970	0.96
151_F	180_A	0.967	0.96
143_R	147_E	0.959	0.96
12_L	18_F	0.951	0.96
172_S	179_R	0.940	0.95
153_Y	176_I	0.940	0.95
100_L	121_R	0.928	0.95
122_V	125_V	0.927	0.95
172_S	177_I	0.917	0.95
170_P	179_R	0.913	0.95
107_R	110_L	0.911	0.95
9_T	13_L	0.911	0.95
61_S	64_K	0.906	0.94
141_I	180_A	0.903	0.94
85_M	98_L	0.895	0.94
138_Q	183_N	0.894	0.94
52_Q	88_A	0.879	0.94
82_Y	86_N	0.879	0.94
82_Y	87_G	0.876	0.93
61_S	66_I	0.875	0.93
150_F	177_I	0.871	0.93
184_V	188_Y	0.870	0.93
60_V	64_K	0.858	0.93
185_I	189_F	0.845	0.92
65_F	68_T	0.842	0.92
67_C	70_Y	0.842	0.92
125_V	150_F	0.841	0.92
63_Y	69_N	0.835	0.92
51_K	85_M	0.828	0.91
172_S	180_A	0.826	0.91
18_F	93_G	0.817	0.91
108_E	156_R	0.814	0.91
153_Y	160_K	0.813	0.91
152_D	182_K	0.811	0.91
12_L	16_P	0.804	0.90
153_Y	182_K	0.804	0.90
133_A	187_A	0.800	0.90
42_E	110_L	0.797	0.90
10_P	13_L	0.795	0.90
39_L	69_N	0.795	0.90
103_Y	169_S	0.790	0.89
39_L	42_E	0.785	0.89
144_I	165_K	0.784	0.89
140_Q	144_I	0.778	0.89
77_K	82_Y	0.777	0.89
68_T	73_S	0.775	0.88
121_R	129_E	0.772	0.88
160_K	178_R	0.770	0.88
13_L	16_P	0.764	0.88
43_I	50_A	0.763	0.88
162_L	166_L	0.761	0.88
22_K	28_L	0.758	0.87
130_K	179_R	0.755	0.87
179_R	184_V	0.753	0.87
184_V	187_A	0.753	0.87
19_I	56_E	0.751	0.87
150_F	159_L	0.747	0.87
168_I	171_S	0.745	0.86
177_I	181_E	0.742	0.86
63_Y	66_I	0.736	0.86
27_I	32_V	0.727	0.85
35_E	164_K	0.725	0.85
38_K	123_L	0.712	0.84
14_Q	17_E	0.707	0.83
87_G	151_F	0.705	0.83
51_K	128_A	0.705	0.83
34_G	48_T	0.702	0.83
125_V	171_S	0.702	0.83
100_L	151_F	0.701	0.83
98_L	102_G	0.697	0.83
25_V	33_D	0.694	0.82
33_D	109_L	0.692	0.82
24_T	140_Q	0.687	0.82
28_L	151_F	0.687	0.82
159_L	172_S	0.681	0.81
51_K	66_I	0.679	0.81
118_K	126_V	0.677	0.81
10_P	15_F	0.675	0.80
98_L	109_L	0.669	0.80
19_I	147_E	0.667	0.80
9_T	18_F	0.666	0.80
150_F	158_G	0.657	0.79
7_I	15_F	0.655	0.78
78_I	158_G	0.653	0.78
65_F	99_I	0.651	0.78
179_R	182_K	0.651	0.78
48_T	168_I	0.649	0.78
88_A	95_F	0.645	0.77
144_I	166_L	0.642	0.77
59_K	63_Y	0.640	0.77
27_I	40_L	0.640	0.77
57_P	61_S	0.634	0.76
76_L	173_L	0.633	0.76
142_L	189_F	0.631	0.76
25_V	109_L	0.631	0.76
157_I	173_L	0.630	0.76
66_I	71_I	0.629	0.76
144_I	157_I	0.628	0.76
80_S	162_L	0.628	0.76
24_T	90_T	0.625	0.75
8_K	92_D	0.625	0.75
140_Q	143_R	0.624	0.75
83_T	110_L	0.623	0.75
89_L	94_I	0.619	0.74
40_L	159_L	0.617	0.74
18_F	185_I	0.615	0.74
118_K	179_R	0.614	0.74
149_G	174_S	0.612	0.74
99_I	109_L	0.609	0.73
48_T	55_E	0.608	0.73
78_I	81_Q	0.605	0.73
17_E	50_A	0.604	0.73
89_L	135_T	0.600	0.72
142_L	184_V	0.598	0.72
110_L	172_S	0.596	0.72
148_A	173_L	0.595	0.72
132_D	188_Y	0.595	0.72
9_T	14_Q	0.594	0.71
149_G	152_D	0.594	0.71
146_L	185_I	0.593	0.71
19_I	119_E	0.593	0.71
57_P	128_A	0.592	0.71
68_T	71_I	0.588	0.71
27_I	146_L	0.588	0.71
114_I	168_I	0.586	0.70
155_R	158_G	0.583	0.70
143_R	189_F	0.583	0.70
23_V	45_G	0.582	0.70
14_Q	94_I	0.579	0.70
16_P	20_P	0.577	0.69
16_P	123_L	0.575	0.69
47_E	165_K	0.575	0.69
107_R	130_K	0.574	0.69
151_F	159_L	0.569	0.68
97_T	170_P	0.564	0.68
139_E	187_A	0.559	0.67
14_Q	18_F	0.555	0.66
45_G	169_S	0.548	0.65
90_T	93_G	0.547	0.65
27_I	72_S	0.547	0.65
115_D	119_E	0.547	0.65
48_T	108_E	0.545	0.65
38_K	84_I	0.544	0.65
27_I	162_L	0.536	0.64
94_I	172_S	0.535	0.63
19_I	62_K	0.534	0.63
106_L	124_K	0.532	0.63
100_L	109_L	0.531	0.63
38_K	93_G	0.530	0.63
8_K	15_F	0.530	0.63
17_E	101_N	0.528	0.62
47_E	91_D	0.528	0.62
109_L	170_P	0.527	0.62
76_L	83_T	0.526	0.62
102_G	186_T	0.525	0.62
103_Y	125_V	0.525	0.62
112_S	116_I	0.524	0.62
28_L	31_R	0.523	0.62
107_R	111_N	0.522	0.62
63_Y	168_I	0.520	0.61
101_N	114_I	0.519	0.61
121_R	152_D	0.518	0.61
86_N	97_T	0.518	0.61
21_K	25_V	0.515	0.61
49_S	53_V	0.515	0.61
48_T	52_Q	0.514	0.60
134_I	146_L	0.514	0.60
17_E	20_P	0.514	0.60
75_L	109_L	0.514	0.60
168_I	176_I	0.511	0.60
137_R	181_E	0.510	0.60
57_P	63_Y	0.510	0.60
160_K	164_K	0.508	0.60
48_T	74_E	0.508	0.60
166_L	174_S	0.505	0.59
172_S	188_Y	0.504	0.59
53_V	56_E	0.501	0.59
15_F	185_I	0.500	0.58
29_D	59_K	0.500	0.58

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1ku3A	1	0.3144	97.8	0.826	Contact Map
4wszA	2	0.2887	97.7	0.83	Contact Map
1s7oA	3	0.366	97.5	0.836	Contact Map
1xsvA	2	0.3608	97.4	0.839	Contact Map
1je8A	2	0.2938	97.4	0.839	Contact Map
1fseA	2	0.299	97.2	0.844	Contact Map
3cloA	2	0.9175	97.1	0.846	Contact Map
2rnjA	1	0.2887	97.1	0.846	Contact Map
3t72q	1	0.3918	97.1	0.847	Contact Map
3c57A	2	0.2629	97.1	0.848	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0068 seconds.