Q97ZW9 - SULSO - GREMLIN Contacts

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Q97ZW9 - Uncharacterized protein

UniProt:	Q97ZW9	Sequences: MSEEENIEKVKKMYEEGLSIREIANQLGLSYSKVRRMLIKAKVNFRGKVPNDKIQKIIEMGKQGYSANRISRELNINFNTVLRILKKYNLGKKRRKLDAKEIEKIREEYIKGNSIYRIAKELNISTNLVVYHLKKMGLYRPIRESSPTSA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	150 (132)
Sequences:	282 (264)
Seq/√Len:	22.9

SULSO - Q97ZW9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
85_L	133_L	3.182	1.00
38_L	85_L	3.146	1.00
37_M	84_I	3.061	1.00
27_L	122_L	2.971	1.00
37_M	132_H	2.934	0.99
43_V	90_L	2.639	0.99
18_L	26_Q	2.594	0.99
74_L	122_L	2.539	0.98
90_L	138_L	2.436	0.98
84_I	132_H	2.401	0.98
109_Y	118_I	2.327	0.97
10_V	105_I	2.324	0.97
57_I	105_I	2.145	0.96
81_V	129_V	2.133	0.95
57_I	81_V	2.133	0.95
10_V	57_I	2.037	0.94
76_I	124_I	2.035	0.94
42_K	89_N	1.959	0.93
38_L	133_L	1.920	0.92
60_M	108_E	1.879	0.91
67_A	115_I	1.842	0.90
57_I	64_G	1.762	0.88
71_S	119_A	1.692	0.86
66_S	120_K	1.691	0.86
18_L	114_S	1.687	0.86
54_I	102_I	1.628	0.84
131_Y	135_K	1.615	0.83
74_L	81_V	1.457	0.76
64_G	112_G	1.454	0.76
89_N	137_G	1.434	0.75
84_I	88_Y	1.431	0.75
130_V	134_K	1.409	0.74
49_V	124_I	1.395	0.73
54_I	84_I	1.362	0.71
20_I	67_A	1.327	0.69
56_K	60_M	1.312	0.68
9_K	12_K	1.268	0.65
113_N	117_R	1.249	0.64
49_V	97_L	1.225	0.63
23_I	85_L	1.216	0.62
115_I	133_L	1.203	0.61
108_E	121_E	1.201	0.61
9_K	13_M	1.172	0.59
106_R	129_V	1.146	0.57
67_A	85_L	1.142	0.57
70_I	74_L	1.135	0.57
70_I	118_I	1.131	0.56
20_I	115_I	1.118	0.56
47_G	129_V	1.104	0.55
60_M	73_E	1.101	0.54
65_Y	123_N	1.087	0.53
60_M	137_G	1.087	0.53
43_V	138_L	1.084	0.53
41_A	136_M	1.083	0.53
118_I	129_V	1.082	0.53
29_L	37_M	1.077	0.53
61_G	109_Y	1.074	0.53
101_E	124_I	1.051	0.51
34_V	81_V	1.044	0.50
14_Y	85_L	1.035	0.50
14_Y	61_G	1.033	0.50
19_S	25_N	1.033	0.50
13_M	108_E	1.023	0.49
29_L	32_S	1.018	0.49
43_V	89_N	1.018	0.49
27_L	34_V	1.017	0.49
17_G	83_R	1.000	0.47
16_E	63_Q	0.991	0.47
14_Y	109_Y	0.969	0.45
97_L	124_I	0.968	0.45
56_K	59_E	0.966	0.45
66_S	110_I	0.963	0.45
57_I	88_Y	0.950	0.44
65_Y	91_G	0.942	0.43
104_K	108_E	0.942	0.43
58_I	62_K	0.929	0.42
127_N	130_V	0.920	0.42
20_I	38_L	0.919	0.42
41_A	88_Y	0.919	0.42
30_S	70_I	0.913	0.41
44_N	74_L	0.904	0.41
65_Y	73_E	0.903	0.41
55_Q	87_K	0.897	0.40
71_S	114_S	0.896	0.40
14_Y	38_L	0.894	0.40
132_H	136_M	0.880	0.39
19_S	94_R	0.879	0.39
97_L	101_E	0.877	0.39
37_M	88_Y	0.865	0.38
22_E	81_V	0.855	0.38
10_V	43_V	0.855	0.38
34_V	129_V	0.851	0.37
43_V	46_R	0.849	0.37
21_R	86_K	0.844	0.37
20_I	85_L	0.835	0.36
23_I	70_I	0.826	0.36
115_I	129_V	0.821	0.35
54_I	57_I	0.820	0.35
25_N	69_R	0.819	0.35
42_K	137_G	0.819	0.35
52_D	111_K	0.806	0.34
131_Y	140_R	0.801	0.34
29_L	124_I	0.799	0.34
11_K	57_I	0.783	0.33
63_Q	86_K	0.781	0.33
106_R	109_Y	0.776	0.33
49_V	53_K	0.773	0.32
27_L	74_L	0.771	0.32
19_S	83_R	0.766	0.32
33_K	128_L	0.764	0.32
67_A	133_L	0.762	0.32
28_G	123_N	0.759	0.32
32_S	70_I	0.739	0.30
14_Y	23_I	0.737	0.30
99_A	103_E	0.732	0.30
30_S	129_V	0.731	0.30
9_K	56_K	0.730	0.30
63_Q	125_S	0.727	0.30
31_Y	125_S	0.725	0.30
58_I	105_I	0.718	0.29
29_L	61_G	0.715	0.29
49_V	88_Y	0.711	0.29
68_N	81_V	0.703	0.28
115_I	130_V	0.693	0.28
21_R	35_R	0.687	0.27
103_E	106_R	0.664	0.26
61_G	100_K	0.661	0.26
13_M	18_L	0.650	0.25
69_R	81_V	0.650	0.25
38_L	67_A	0.647	0.25
77_N	85_L	0.647	0.25
52_D	57_I	0.646	0.25
12_K	28_G	0.636	0.25
90_L	94_R	0.631	0.24
48_K	69_R	0.628	0.24
88_Y	136_M	0.628	0.24
10_V	101_E	0.626	0.24
85_L	89_N	0.626	0.24
25_N	48_K	0.624	0.24
53_K	58_I	0.622	0.24
23_I	106_R	0.621	0.24
24_A	27_L	0.619	0.24
66_S	90_L	0.618	0.24
34_V	44_N	0.615	0.24
80_T	87_K	0.613	0.24
59_E	97_L	0.610	0.23
87_K	100_K	0.607	0.23
81_V	138_L	0.604	0.23
40_K	72_R	0.603	0.23
124_I	131_Y	0.599	0.23
44_N	87_K	0.599	0.23
86_K	95_R	0.598	0.23
44_N	124_I	0.597	0.23
30_S	75_N	0.592	0.22
32_S	123_N	0.592	0.22
91_G	118_I	0.589	0.22
9_K	120_K	0.588	0.22
116_Y	127_N	0.588	0.22
35_R	127_N	0.585	0.22
61_G	70_I	0.585	0.22
109_Y	129_V	0.580	0.22
40_K	77_N	0.580	0.22
75_N	87_K	0.576	0.22
48_K	124_I	0.574	0.22
92_K	95_R	0.573	0.22
50_P	105_I	0.572	0.22
66_S	104_K	0.569	0.21
117_R	123_N	0.569	0.21
19_S	114_S	0.568	0.21
114_S	130_V	0.567	0.21
19_S	44_N	0.565	0.21
53_K	76_I	0.556	0.21
26_Q	123_N	0.555	0.21
9_K	19_S	0.554	0.21
9_K	52_D	0.554	0.21
36_R	110_I	0.554	0.21
32_S	81_V	0.552	0.21
17_G	112_G	0.551	0.21
23_I	59_E	0.547	0.20
49_V	80_T	0.540	0.20
38_L	108_E	0.540	0.20
21_R	29_L	0.539	0.20
100_K	139_Y	0.539	0.20
37_M	106_R	0.537	0.20
24_A	122_L	0.537	0.20
104_K	117_R	0.533	0.20
73_E	80_T	0.528	0.20
12_K	16_E	0.527	0.19
23_I	57_I	0.526	0.19
81_V	101_E	0.522	0.19
92_K	104_K	0.521	0.19
12_K	75_N	0.520	0.19
26_Q	59_E	0.518	0.19
19_S	134_K	0.512	0.19
69_R	90_L	0.511	0.19
11_K	15_E	0.506	0.19
47_G	104_K	0.503	0.18
65_Y	70_I	0.500	0.18

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1u78A	1	0.6267	99	0.627	Contact Map
1k78A	1	0.5867	98.9	0.645	Contact Map
1pdnC	1	0.5667	98.8	0.648	Contact Map
2k27A	1	0.8467	98.7	0.665	Contact Map
2lvsA	1	0.6333	98.6	0.674	Contact Map
4u7bA	2	0.6933	98.3	0.701	Contact Map
1h89C	1	0.7133	98.1	0.72	Contact Map
1hlvA	1	0.5933	97.7	0.745	Contact Map
4fcyA	4	0.7867	97.7	0.745	Contact Map
1h8aC	1	0.6467	97.6	0.747	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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